Wall clock time and date at job start Tue Mar 31 2020 06:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 119.99822 * 2 1 4 4 C 1.50699 * 109.47422 * 274.99961 * 3 2 1 5 5 H 1.08000 * 119.99456 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00219 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99975 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99880 * 180.02562 * 6 4 3 9 9 H 1.48491 * 109.47449 * 59.99673 * 8 6 4 10 10 H 1.48498 * 109.47128 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46809 * 299.99839 * 8 6 4 12 12 S 1.65599 * 120.00101 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40186 * 336.46109 * 12 2 1 14 14 O 1.42099 * 106.40387 * 203.53802 * 12 2 1 15 15 C 1.76204 * 107.21710 * 89.99575 * 12 2 1 16 16 C 1.38326 * 119.87556 * 90.00304 * 15 12 2 17 17 C 1.38011 * 120.11849 * 180.02562 * 16 15 12 18 18 C 1.39343 * 119.88074 * 359.97438 * 17 16 15 19 19 C 1.48397 * 120.11894 * 180.02562 * 18 17 16 20 20 C 1.39336 * 120.12109 * 0.24187 * 19 18 17 21 21 C 1.38016 * 119.87476 * 180.23935 * 20 19 18 22 22 C 1.38322 * 120.11965 * 359.51273 * 21 20 19 23 23 N 1.48025 * 119.87789 * 180.23396 * 22 21 20 24 24 O 1.21798 * 119.99741 * 0.02562 * 23 22 21 25 25 O 1.21803 * 119.99887 * 180.02562 * 23 22 21 26 26 C 1.38326 * 120.24507 * 0.26028 * 22 21 20 27 27 C 1.38011 * 120.11849 * 359.97438 * 26 22 21 28 28 C 1.39336 * 119.75518 * 0.27039 * 18 17 16 29 29 C 1.38016 * 119.87868 * 359.45302 * 28 18 17 30 30 H 1.09002 * 109.46749 * 269.99564 * 1 2 3 31 31 H 1.08992 * 109.47358 * 29.99820 * 1 2 3 32 32 H 1.08994 * 109.47137 * 150.00232 * 1 2 3 33 33 H 1.09004 * 109.47467 * 35.00449 * 3 2 1 34 34 H 1.09011 * 109.47087 * 155.00337 * 3 2 1 35 35 H 0.97002 * 119.99805 * 179.97438 * 7 6 4 36 36 H 1.08001 * 119.93644 * 359.97438 * 16 15 12 37 37 H 1.08004 * 120.05972 * 179.97438 * 17 16 15 38 38 H 1.07998 * 120.06199 * 0.02971 * 20 19 18 39 39 H 1.08002 * 119.94256 * 179.79765 * 21 20 19 40 40 H 1.08001 * 119.93644 * 180.02562 * 26 22 21 41 41 H 1.08004 * 120.06006 * 180.02562 * 27 26 22 42 42 H 1.07998 * 120.05798 * 179.70493 * 28 18 17 43 43 H 1.08001 * 119.94229 * 180.27497 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9282 1.1938 -2.2331 6 6 3.0006 2.9504 -1.6664 7 7 3.5042 3.6464 -0.6707 8 14 3.1783 3.5667 -3.4208 9 1 1.8319 3.7732 -4.0118 10 1 3.9220 4.8521 -3.4209 11 1 3.9232 2.5644 -4.2244 12 16 2.2930 -1.4341 -0.0006 13 8 1.4113 -2.4068 0.5434 14 8 3.5760 -1.1570 0.5439 15 6 2.5537 -1.8851 -1.6839 16 6 3.6944 -1.4618 -2.3420 17 6 3.9034 -1.8116 -3.6605 18 6 2.9631 -2.5932 -4.3288 19 6 3.1827 -2.9729 -5.7464 20 6 4.3324 -2.5535 -6.4126 21 6 4.5291 -2.9055 -7.7326 22 6 3.5924 -3.6816 -8.3910 23 7 3.8114 -4.0603 -9.8051 24 8 4.8151 -3.6889 -10.3866 25 8 2.9878 -4.7432 -10.3872 26 6 2.4516 -4.1047 -7.7331 27 6 2.2424 -3.7545 -6.4146 28 6 1.8134 -3.0125 -3.6626 29 6 1.6173 -2.6616 -2.3422 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6501 2.0043 0.5895 34 1 3.1858 1.1177 0.4343 35 1 3.9683 4.4797 -0.8473 36 1 4.4224 -0.8557 -1.8231 37 1 4.7942 -1.4802 -4.1735 38 1 5.0665 -1.9513 -5.8981 39 1 5.4183 -2.5782 -8.2509 40 1 1.7237 -4.7108 -8.2519 41 1 1.3515 -4.0857 -5.9017 42 1 1.0791 -3.6144 -4.1772 43 1 0.7286 -2.9898 -1.8235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002024104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:16 Heat of formation + Delta-G solvation = -18.730010 kcal Electronic energy + Delta-G solvation = -31148.756114 eV Core-core repulsion = 26675.556827 eV Total energy + Delta-G solvation = -4473.199287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.45770 -40.40697 -38.68314 -36.84334 -36.83747 -35.65682 -35.39225 -33.67014 -32.61708 -32.21712 -30.99667 -30.23204 -27.92407 -26.72545 -25.22182 -24.25220 -23.73327 -22.42587 -22.11490 -21.64758 -19.79991 -18.90130 -18.78620 -17.85650 -17.80542 -17.11824 -16.85659 -16.42551 -16.16867 -15.54755 -15.47981 -14.81988 -14.76300 -14.49670 -14.41458 -14.05122 -13.83676 -13.58176 -13.42948 -13.31194 -12.98764 -12.46605 -12.28970 -12.27492 -12.18836 -11.85964 -11.83948 -11.64078 -11.46648 -11.41650 -11.29412 -11.24884 -11.14951 -10.93935 -10.73735 -10.59797 -10.56915 -10.17782 -9.92536 -9.89208 -9.12450 -8.86971 -8.61703 -8.18269 -6.23365 -4.30896 -0.73128 0.46544 0.50290 0.90665 1.09146 1.23434 1.32078 2.79389 3.14472 3.22039 3.22482 3.38036 3.64849 3.87188 3.88091 4.02118 4.20065 4.24823 4.35398 4.42424 4.52290 4.61225 4.85318 4.89209 5.10743 5.15799 5.21643 5.23979 5.25263 5.34254 5.44448 5.52988 5.64743 5.77962 5.83026 5.95196 5.99510 6.10029 6.12727 6.15029 6.21094 6.42868 6.69503 7.18089 7.27228 7.34675 7.46387 7.72685 8.00783 8.73857 9.35864 10.84472 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.002645 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.039669 B =10582.548092 C =12450.011864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.984 5.984 3 C 0.242 3.758 4 C -0.545 4.545 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.891 3.109 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 S 2.689 3.311 13 O -0.975 6.975 14 O -0.953 6.953 15 C -0.649 4.649 16 C 0.004 3.996 17 C -0.120 4.120 18 C -0.028 4.028 19 C 0.015 3.985 20 C -0.110 4.110 21 C -0.049 4.049 22 C -0.051 4.051 23 N 0.030 4.970 24 O -0.162 6.162 25 O -0.163 6.163 26 C -0.050 4.050 27 C -0.111 4.111 28 C -0.126 4.126 29 C -0.024 4.024 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.266 0.734 36 H 0.152 0.848 37 H 0.135 0.865 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.133 0.867 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 -13.362 -8.845 16.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.824 5.824 3 C 0.120 3.880 4 C -0.584 4.584 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.718 3.282 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.202 1.202 12 S 2.777 3.223 13 O -0.966 6.966 14 O -0.944 6.944 15 C -0.734 4.734 16 C -0.015 4.015 17 C -0.139 4.139 18 C -0.028 4.028 19 C 0.015 3.985 20 C -0.128 4.128 21 C -0.068 4.068 22 C -0.134 4.134 23 N 0.549 4.451 24 O -0.378 6.378 25 O -0.379 6.379 26 C -0.069 4.069 27 C -0.130 4.130 28 C -0.144 4.144 29 C -0.043 4.043 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.169 0.831 37 H 0.152 0.848 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.150 0.850 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.365 -13.451 -7.406 15.536 hybrid contribution 0.091 0.608 -2.337 2.416 sum -2.274 -12.843 -9.743 16.280 Atomic orbital electron populations 1.21301 0.79599 1.02360 1.01068 1.57295 1.14275 1.22547 1.88301 1.19316 0.92445 0.78597 0.97644 1.21498 1.36971 1.07109 0.92870 0.92078 1.24920 0.95132 0.96434 0.97117 1.69911 1.36378 1.15213 1.30945 0.86679 0.78372 0.78337 0.84778 1.20198 1.21013 1.20172 1.02062 0.73534 0.72708 0.73987 1.93522 1.66399 1.60143 1.76500 1.93564 1.40315 1.84490 1.75993 1.31496 1.03067 1.10505 1.28327 1.20993 0.94581 0.92231 0.93650 1.21356 0.99323 0.98132 0.95046 1.18849 0.95455 0.97473 0.91055 1.19322 0.93260 0.93022 0.92934 1.21388 0.97964 1.00344 0.93122 1.21015 0.98184 0.93168 0.94404 1.21199 1.01030 1.08794 0.82387 1.43631 0.99821 0.98562 1.03118 1.94546 1.18177 1.57273 1.67765 1.94537 1.40224 1.35355 1.67735 1.20987 0.94804 0.96684 0.94435 1.21317 1.00244 0.98278 0.93116 1.21225 0.96991 1.01290 0.94940 1.20842 0.97061 0.92557 0.93889 0.93226 0.90542 0.92704 0.93884 0.92733 0.92367 0.83073 0.84757 0.82864 0.82589 0.82654 0.83024 0.84956 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 10.31 59.85 0.62 2.21 16 2 N -0.98 -18.63 3.17 -123.06 -0.39 -19.02 16 3 C 0.24 5.57 5.41 -5.20 -0.03 5.54 16 4 C -0.55 -13.35 9.38 -34.44 -0.32 -13.67 16 5 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 6 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -24.06 13.29 55.43 0.74 -23.32 16 8 Si 0.89 19.71 29.54 -169.99 -5.02 14.69 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 S 2.69 48.59 5.65 -107.50 -0.61 47.98 16 13 O -0.98 -17.81 16.34 -57.17 -0.93 -18.74 16 14 O -0.95 -19.97 15.82 -57.17 -0.90 -20.88 16 15 C -0.65 -10.21 5.98 -39.52 -0.24 -10.44 16 16 C 0.00 0.07 9.51 -39.63 -0.38 -0.31 16 17 C -0.12 -1.53 9.43 -39.25 -0.37 -1.90 16 18 C -0.03 -0.32 5.88 -104.89 -0.62 -0.93 16 19 C 0.01 0.14 5.88 -104.90 -0.62 -0.48 16 20 C -0.11 -0.94 9.43 -39.25 -0.37 -1.31 16 21 C -0.05 -0.42 9.54 -39.63 -0.38 -0.80 16 22 C -0.05 -0.51 6.85 -79.88 -0.55 -1.05 16 23 N 0.03 0.36 4.45 34.00 0.15 0.51 16 24 O -0.16 -2.06 18.44 -29.46 -0.54 -2.60 16 25 O -0.16 -2.04 18.44 -29.46 -0.54 -2.58 16 26 C -0.05 -0.41 9.54 -39.63 -0.38 -0.79 16 27 C -0.11 -0.86 9.43 -39.26 -0.37 -1.23 16 28 C -0.13 -1.37 9.43 -39.25 -0.37 -1.74 16 29 C -0.02 -0.32 9.51 -39.63 -0.38 -0.69 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 32 H 0.05 0.71 7.79 -51.93 -0.40 0.30 16 33 H 0.04 1.04 8.11 -51.93 -0.42 0.61 16 34 H 0.05 1.37 6.92 -51.92 -0.36 1.01 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.15 2.45 7.61 -52.49 -0.40 2.05 16 37 H 0.13 1.35 6.21 -52.48 -0.33 1.03 16 38 H 0.15 1.07 6.21 -52.49 -0.33 0.74 16 39 H 0.16 1.14 7.60 -52.49 -0.40 0.74 16 40 H 0.16 1.01 7.60 -52.49 -0.40 0.61 16 41 H 0.15 0.81 6.21 -52.48 -0.33 0.48 16 42 H 0.13 0.97 6.21 -52.49 -0.33 0.65 16 43 H 0.14 1.58 7.60 -52.49 -0.40 1.18 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -31.67 387.80 -11.52 -43.19 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.47 Total: 0.89 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -4.84 Total: -25.96 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.50 Total: -41.83 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -2.93 Total: -44.80 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: 48.59 SS G_CDS: -0.61 Total: 47.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.67 -11.52 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002024104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.464 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds