Wall clock time and date at job start Tue Mar 31 2020 06:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.36830 * 125.03646 * 2 1 4 4 H 0.96999 * 125.06511 * 0.05088 * 3 2 1 5 5 C 1.37684 * 109.87309 * 180.30457 * 3 2 1 6 6 C 1.39133 * 133.50825 * 179.72046 * 5 3 2 7 7 C 1.37744 * 119.77782 * 180.02562 * 6 5 3 8 8 C 1.38835 * 120.66998 * 359.97438 * 7 6 5 9 9 C 1.36623 * 120.52539 * 0.02562 * 8 7 6 10 10 C 1.39633 * 119.76271 * 359.97438 * 9 8 7 11 11 C 1.34239 * 125.03438 * 179.84707 * 2 1 3 12 12 C 1.50697 * 126.49986 * 359.96887 * 11 2 1 13 13 O 1.42903 * 110.45663 * 208.99568 * 12 11 2 14 14 C 1.51140 * 110.62926 * 331.67097 * 12 11 2 15 15 C 1.37679 * 132.85499 * 298.70910 * 14 12 11 16 16 C 1.38389 * 119.91238 * 179.97438 * 15 14 12 17 17 C 1.38300 * 119.83006 * 0.02562 * 16 15 14 18 18 C 1.37931 * 120.37470 * 0.02834 * 17 16 15 19 19 C 1.38905 * 106.33806 * 118.70248 * 14 12 11 20 20 N 1.39529 * 110.22774 * 0.02562 * 19 14 12 21 21 C 1.46508 * 123.87311 * 180.02562 * 20 19 14 22 22 C 1.53001 * 109.46713 * 269.99948 * 21 20 19 23 23 C 1.50698 * 109.47119 * 180.02562 * 22 21 20 24 24 H 1.08010 * 119.99650 * 359.97438 * 23 22 21 25 25 C 1.37871 * 120.00566 * 179.97438 * 23 22 21 26 26 N 1.31515 * 119.99690 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00464 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47121 * 90.00351 * 27 25 23 29 29 H 1.48503 * 109.47284 * 210.00491 * 27 25 23 30 30 H 1.48505 * 109.47059 * 330.00380 * 27 25 23 31 31 C 1.34366 * 112.25091 * 359.97438 * 20 19 14 32 32 O 1.21281 * 126.44307 * 180.02562 * 31 20 19 33 33 H 1.09000 * 109.46232 * 270.16125 * 1 2 3 34 34 H 1.08993 * 109.47154 * 30.15805 * 1 2 3 35 35 H 1.09000 * 109.47262 * 150.16046 * 1 2 3 36 36 H 1.07996 * 120.10899 * 0.02562 * 6 5 3 37 37 H 1.08003 * 119.66718 * 180.02562 * 7 6 5 38 38 H 1.07994 * 119.73555 * 180.02562 * 8 7 6 39 39 H 1.08003 * 120.11843 * 179.97438 * 9 8 7 40 40 H 0.96700 * 114.00311 * 178.09984 * 13 12 11 41 41 H 1.08001 * 120.04187 * 359.97438 * 15 14 12 42 42 H 1.08005 * 120.08470 * 179.97438 * 16 15 14 43 43 H 1.08007 * 119.81517 * 180.02562 * 17 16 15 44 44 H 1.08002 * 119.93578 * 179.97438 * 18 17 16 45 45 H 1.09003 * 109.46952 * 29.99525 * 21 20 19 46 46 H 1.08997 * 109.47044 * 150.00199 * 21 20 19 47 47 H 1.09003 * 109.47066 * 299.99507 * 22 21 20 48 48 H 1.08997 * 109.47285 * 59.99782 * 22 21 20 49 49 H 0.97004 * 120.00051 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.1203 0.0000 4 1 1.9624 2.0324 0.0007 5 6 3.6215 0.7602 -0.0069 6 6 4.8099 1.4836 -0.0148 7 6 6.0159 0.8181 -0.0210 8 6 6.0589 -0.5696 -0.0189 9 6 4.9042 -1.2997 -0.0112 10 6 3.6705 -0.6455 -0.0048 11 6 2.2777 -1.0992 0.0029 12 6 1.8004 -2.5285 0.0074 13 8 2.7532 -3.3712 0.6585 14 6 0.4510 -2.6372 0.6796 15 6 0.0149 -2.3571 1.9551 16 6 -1.3121 -2.5603 2.2909 17 6 -2.1952 -3.0449 1.3432 18 6 -1.7606 -3.3274 0.0650 19 6 -0.4260 -3.1242 -0.2813 20 7 0.2452 -3.3302 -1.4870 21 6 -0.3963 -3.8385 -2.7022 22 6 -0.3114 -5.3660 -2.7228 23 6 -0.9706 -5.8890 -3.9729 24 1 -1.4069 -5.2006 -4.6817 25 6 -1.0169 -7.2460 -4.2120 26 7 -0.4861 -8.0842 -3.3487 27 14 -1.8346 -7.8942 -5.7614 28 1 -0.8287 -7.9883 -6.8498 29 1 -2.4032 -9.2400 -5.4951 30 1 -2.9222 -6.9696 -6.1710 31 6 1.5471 -3.0079 -1.4061 32 8 2.3654 -3.0861 -2.2978 33 1 -0.3632 0.0029 1.0277 34 1 -0.3633 0.8885 -0.5163 35 1 -0.3634 -0.8914 -0.5113 36 1 4.7869 2.5633 -0.0160 37 1 6.9373 1.3814 -0.0267 38 1 7.0128 -1.0759 -0.0235 39 1 4.9453 -2.3789 -0.0101 40 1 2.4840 -4.2982 0.7161 41 1 0.7076 -1.9792 2.6925 42 1 -1.6571 -2.3419 3.2908 43 1 -3.2309 -3.2030 1.6055 44 1 -2.4562 -3.7059 -0.6694 45 1 -1.4424 -3.5325 -2.7160 46 1 0.1122 -3.4346 -3.5776 47 1 0.7347 -5.6720 -2.7089 48 1 -0.8197 -5.7700 -1.8473 49 1 -0.5189 -9.0390 -3.5167 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002212093.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:53 Heat of formation + Delta-G solvation = 24.069378 kcal Electronic energy + Delta-G solvation = -34997.046984 eV Core-core repulsion = 30661.925856 eV Total energy + Delta-G solvation = -4335.121128 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.14209 -40.94045 -38.27897 -37.11618 -36.57409 -35.76690 -33.58313 -32.75761 -31.47304 -30.96259 -30.51325 -29.48077 -28.68730 -27.64990 -26.21817 -24.77222 -22.46654 -22.41459 -21.96071 -21.62605 -21.32591 -19.94903 -19.29523 -17.85241 -17.69495 -16.92493 -16.65819 -16.23984 -15.78531 -15.52367 -15.41520 -15.04336 -14.82618 -14.53467 -14.17328 -14.10492 -13.97884 -13.86430 -13.77849 -13.42160 -13.31283 -13.04701 -12.86615 -12.59024 -12.45725 -12.40359 -12.12054 -11.85879 -11.62989 -11.50946 -11.47629 -11.40350 -11.02299 -11.00463 -10.87148 -10.44538 -10.36803 -10.14502 -9.86464 -9.54174 -9.38883 -9.12999 -8.89818 -8.45319 -8.16062 -7.70667 -7.59534 -6.09794 -4.14427 1.10628 1.16770 1.36654 1.64608 2.39501 2.73837 2.90688 3.11613 3.27551 3.34068 3.36391 3.82898 3.94639 4.04300 4.21249 4.38805 4.57578 4.64260 4.74535 4.86661 5.01551 5.03645 5.08020 5.18556 5.26557 5.28618 5.30630 5.38638 5.42860 5.54029 5.57927 5.61028 5.73642 5.81912 5.86179 5.92103 5.93690 6.12171 6.15334 6.23665 6.40919 6.46542 6.51550 6.58580 6.64718 6.70794 6.72950 6.79121 6.89259 7.15618 7.27732 7.41421 7.51090 7.52801 7.65555 7.86358 8.16622 8.28031 8.91036 9.50396 11.01451 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.002986 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.863519 B = 9376.100723 C =10841.403029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.108 3.892 3 N -0.590 5.590 4 H 0.415 0.585 5 C 0.092 3.908 6 C -0.136 4.136 7 C -0.100 4.100 8 C -0.153 4.153 9 C -0.050 4.050 10 C -0.073 4.073 11 C -0.151 4.151 12 C 0.237 3.763 13 O -0.520 6.520 14 C -0.185 4.185 15 C -0.044 4.044 16 C -0.159 4.159 17 C -0.073 4.073 18 C -0.142 4.142 19 C 0.172 3.828 20 N -0.546 5.546 21 C 0.109 3.891 22 C 0.014 3.986 23 C -0.526 4.526 24 H 0.058 0.942 25 C 0.061 3.939 26 N -0.890 5.890 27 Si 0.896 3.104 28 H -0.279 1.279 29 H -0.285 1.285 30 H -0.273 1.273 31 C 0.503 3.497 32 O -0.471 6.471 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.386 0.614 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.022 0.978 48 H 0.021 0.979 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 19.337 14.034 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.001 4.001 3 N -0.194 5.194 4 H 0.252 0.748 5 C -0.014 4.014 6 C -0.157 4.157 7 C -0.119 4.119 8 C -0.172 4.172 9 C -0.068 4.068 10 C -0.078 4.078 11 C -0.159 4.159 12 C 0.192 3.808 13 O -0.325 6.325 14 C -0.188 4.188 15 C -0.062 4.062 16 C -0.178 4.178 17 C -0.092 4.092 18 C -0.163 4.163 19 C 0.075 3.925 20 N -0.267 5.267 21 C -0.010 4.010 22 C -0.024 4.024 23 C -0.564 4.564 24 H 0.076 0.924 25 C -0.141 4.141 26 N -0.528 5.528 27 Si 0.723 3.277 28 H -0.205 1.205 29 H -0.211 1.211 30 H -0.198 1.198 31 C 0.288 3.712 32 O -0.342 6.342 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.234 0.766 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.040 0.960 48 H 0.040 0.960 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.142 19.725 13.423 24.065 hybrid contribution -0.959 -0.709 -1.038 1.581 sum 2.183 19.016 12.385 22.798 Atomic orbital electron populations 1.20840 0.87475 1.04012 1.03650 1.19852 0.93170 0.85066 1.01995 1.41578 1.04020 1.07794 1.65979 0.74829 1.18212 0.84440 0.94058 1.04695 1.19920 0.89638 0.98653 1.07458 1.20770 0.96492 0.94479 1.00174 1.20657 0.98082 0.93857 1.04597 1.20468 0.90118 1.00454 0.95802 1.18814 0.92691 0.91293 1.04974 1.18835 0.91612 0.90240 1.15201 1.18245 0.85542 0.88633 0.88362 1.86561 1.44061 1.22998 1.78907 1.20306 0.95162 1.08021 0.95317 1.20185 0.95463 0.96728 0.93844 1.20984 0.93086 1.03966 0.99746 1.20902 0.99760 0.96510 0.92032 1.20521 0.93095 1.04768 0.97893 1.18310 0.93405 0.95269 0.85558 1.46365 1.09420 1.59742 1.11209 1.22184 0.96643 0.99099 0.83100 1.19400 0.98180 0.86977 0.97861 1.21009 1.37688 0.91966 1.05760 0.92376 1.24989 0.95374 0.96980 0.96761 1.69967 1.44596 1.02742 1.35525 0.86536 0.79644 0.78259 0.83233 1.20510 1.21115 1.19772 1.21203 0.81788 0.77370 0.90793 1.90749 1.48390 1.50980 1.44121 0.89715 0.91487 0.89249 0.86514 0.85999 0.86118 0.85218 0.76558 0.85771 0.85671 0.85377 0.85029 0.90716 0.90290 0.96006 0.96034 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 8.64 36.01 0.31 -0.76 16 2 C 0.11 1.38 7.00 -81.77 -0.57 0.81 16 3 N -0.59 -6.57 6.07 -6.95 -0.04 -6.61 16 4 H 0.41 3.11 8.96 -40.82 -0.37 2.75 16 5 C 0.09 1.22 7.28 -83.99 -0.61 0.61 16 6 C -0.14 -1.53 10.08 -39.43 -0.40 -1.92 16 7 C -0.10 -1.10 10.01 -39.54 -0.40 -1.49 16 8 C -0.15 -1.90 9.97 -39.94 -0.40 -2.30 16 9 C -0.05 -0.75 9.69 -39.64 -0.38 -1.14 16 10 C -0.07 -1.15 6.18 -105.14 -0.65 -1.80 16 11 C -0.15 -2.35 5.21 -102.71 -0.53 -2.89 16 12 C 0.24 3.81 1.33 -93.52 -0.12 3.68 16 13 O -0.52 -8.06 11.77 -35.23 -0.41 -8.47 16 14 C -0.18 -2.54 3.10 -104.36 -0.32 -2.87 16 15 C -0.04 -0.49 8.54 -39.73 -0.34 -0.83 16 16 C -0.16 -1.53 10.07 -39.50 -0.40 -1.92 16 17 C -0.07 -0.77 10.01 -39.67 -0.40 -1.16 16 18 C -0.14 -1.89 9.74 -39.27 -0.38 -2.27 16 19 C 0.17 2.64 4.90 -83.69 -0.41 2.22 16 20 N -0.55 -10.07 2.73 -113.25 -0.31 -10.38 16 21 C 0.11 2.25 5.67 -4.04 -0.02 2.23 16 22 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 23 C -0.53 -14.51 9.11 -34.44 -0.31 -14.82 16 24 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 25 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 26 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 27 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 31 C 0.50 9.86 7.20 -10.83 -0.08 9.78 16 32 O -0.47 -10.97 17.67 5.56 0.10 -10.88 16 33 H 0.08 0.76 7.09 -51.93 -0.37 0.39 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.11 4.96 -51.93 -0.26 0.85 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.13 2.02 7.27 -52.48 -0.38 1.64 16 40 H 0.39 5.06 9.02 45.56 0.41 5.47 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 44 H 0.13 1.78 7.70 -52.49 -0.40 1.38 16 45 H 0.07 1.38 7.62 -51.93 -0.40 0.98 16 46 H 0.08 1.70 7.95 -51.93 -0.41 1.29 16 47 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -34.82 406.25 -11.02 -45.84 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.52 Total: 8.77 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -6.67 Total: -15.01 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.38 Total: -42.69 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.32 Total: -19.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.82 -11.02 -45.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002212093.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.912 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds