Wall clock time and date at job start Tue Mar 31 2020 06:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36838 * 125.02961 * 2 1 4 4 H 0.96991 * 125.06613 * 0.02562 * 3 2 1 5 5 C 1.37683 * 109.86665 * 179.97438 * 3 2 1 6 6 C 1.39127 * 133.49943 * 179.97438 * 5 3 2 7 7 C 1.37744 * 119.78012 * 180.02562 * 6 5 3 8 8 C 1.38831 * 120.66629 * 0.28277 * 7 6 5 9 9 C 1.36631 * 120.52682 * 359.45066 * 8 7 6 10 10 C 1.39628 * 119.76254 * 0.52406 * 9 8 7 11 11 C 1.34236 * 125.03805 * 179.97438 * 2 1 3 12 12 C 1.50699 * 126.49836 * 0.05302 * 11 2 1 13 13 O 1.42905 * 110.45136 * 156.10859 * 12 11 2 14 14 C 1.51134 * 110.51284 * 33.36133 * 12 11 2 15 15 C 1.37680 * 132.85293 * 61.34719 * 14 12 11 16 16 C 1.38392 * 119.91517 * 180.02562 * 15 14 12 17 17 C 1.38300 * 119.82963 * 359.97438 * 16 15 14 18 18 C 1.37940 * 120.36937 * 0.02562 * 17 16 15 19 19 C 1.38895 * 106.34202 * 241.35088 * 14 12 11 20 20 N 1.39533 * 110.23089 * 359.97438 * 19 14 12 21 21 C 1.46496 * 123.88053 * 179.97438 * 20 19 14 22 22 C 1.52998 * 109.47130 * 269.99854 * 21 20 19 23 23 C 1.50690 * 109.47520 * 179.97438 * 22 21 20 24 24 H 1.08006 * 119.99732 * 359.97438 * 23 22 21 25 25 C 1.37874 * 120.00545 * 179.97438 * 23 22 21 26 26 N 1.31518 * 119.99646 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00558 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46645 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47170 * 119.99846 * 27 25 23 30 30 H 1.48498 * 109.47508 * 240.00068 * 27 25 23 31 31 C 1.34373 * 112.24475 * 359.97438 * 20 19 14 32 32 O 1.21283 * 126.43976 * 180.02562 * 31 20 19 33 33 H 1.08998 * 109.47187 * 263.46929 * 1 2 3 34 34 H 1.09000 * 109.47393 * 23.47473 * 1 2 3 35 35 H 1.09002 * 109.46641 * 143.47519 * 1 2 3 36 36 H 1.08007 * 120.11073 * 0.03195 * 6 5 3 37 37 H 1.08006 * 119.67297 * 180.02562 * 7 6 5 38 38 H 1.08001 * 119.74197 * 179.72152 * 8 7 6 39 39 H 1.08000 * 120.12000 * 180.30149 * 9 8 7 40 40 H 0.96703 * 113.99560 * 180.02562 * 13 12 11 41 41 H 1.08004 * 120.04478 * 0.02562 * 15 14 12 42 42 H 1.08004 * 120.08727 * 180.02562 * 16 15 14 43 43 H 1.07995 * 119.81413 * 179.97438 * 17 16 15 44 44 H 1.08000 * 119.93287 * 180.02562 * 18 17 16 45 45 H 1.09009 * 109.46749 * 29.99193 * 21 20 19 46 46 H 1.08992 * 109.47444 * 149.99321 * 21 20 19 47 47 H 1.09000 * 109.47150 * 300.00050 * 22 21 20 48 48 H 1.09005 * 109.47444 * 59.99113 * 22 21 20 49 49 H 0.97007 * 119.99830 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2925 1.1205 0.0000 4 1 1.9623 2.0325 0.0004 5 6 3.6214 0.7604 0.0006 6 6 4.8097 1.4839 0.0004 7 6 6.0158 0.8186 0.0006 8 6 6.0590 -0.5690 -0.0049 9 6 4.9043 -1.2993 0.0007 10 6 3.6706 -0.6455 0.0009 11 6 2.2777 -1.0991 0.0005 12 6 1.8005 -2.5285 0.0000 13 8 2.8040 -3.3898 -0.5416 14 6 0.5119 -2.6564 -0.7794 15 6 0.1854 -2.4149 -2.0949 16 6 -1.1095 -2.6270 -2.5348 17 6 -2.0707 -3.0813 -1.6503 18 6 -1.7462 -3.3240 -0.3318 19 6 -0.4444 -3.1127 0.1186 20 7 0.1225 -3.2825 1.3823 21 6 -0.6204 -3.7527 2.5541 22 6 -1.2149 -2.5539 3.2958 23 6 -1.9795 -3.0375 4.5009 24 1 -2.0362 -4.0944 4.7160 25 6 -2.6068 -2.1310 5.3289 26 7 -2.5382 -0.8440 5.0667 27 14 -3.5553 -2.7305 6.8223 28 1 -3.4811 -4.2120 6.8937 29 1 -2.9632 -2.1458 8.0523 30 1 -4.9751 -2.3105 6.7085 31 6 1.4281 -2.9652 1.4009 32 8 2.1687 -3.0181 2.3599 33 1 -0.3633 -0.1169 1.0210 34 1 -0.3634 0.9426 -0.4094 35 1 -0.3633 -0.8259 -0.6117 36 1 4.7866 2.5638 0.0001 37 1 6.9373 1.3821 0.0009 38 1 7.0130 -1.0753 -0.0092 39 1 4.9456 -2.3786 0.0013 40 1 2.5500 -4.3226 -0.5664 41 1 0.9389 -2.0605 -2.7828 42 1 -1.3686 -2.4389 -3.5663 43 1 -3.0813 -3.2463 -1.9937 44 1 -2.5023 -3.6791 0.3527 45 1 -1.4236 -4.4160 2.2329 46 1 0.0535 -4.2934 3.2186 47 1 -0.4117 -1.8906 3.6169 48 1 -1.8887 -2.0131 2.6313 49 1 -2.9792 -0.2061 5.6494 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002212095.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:57 Heat of formation + Delta-G solvation = 25.132375 kcal Electronic energy + Delta-G solvation = -35278.060116 eV Core-core repulsion = 30942.985083 eV Total energy + Delta-G solvation = -4335.075033 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.10431 -40.87065 -38.31424 -37.02595 -36.61899 -35.77690 -33.57268 -32.72343 -31.43632 -30.85775 -30.48704 -29.42074 -28.68769 -27.55559 -26.15545 -24.76834 -22.44090 -22.39600 -21.85238 -21.59152 -21.27475 -20.02718 -19.22209 -17.83441 -17.59558 -16.90385 -16.72370 -16.13713 -15.79825 -15.48981 -15.39155 -14.95710 -14.72020 -14.54545 -14.18603 -14.02997 -13.98205 -13.86303 -13.75203 -13.38168 -13.31818 -12.88262 -12.77193 -12.57233 -12.44131 -12.31299 -12.03074 -11.82091 -11.63510 -11.50082 -11.36836 -11.29771 -11.04786 -10.97985 -10.86487 -10.40957 -10.38168 -10.15580 -9.82763 -9.55884 -9.37790 -9.11399 -8.86672 -8.47278 -8.05097 -7.67709 -7.53046 -6.11888 -4.16042 1.14235 1.22454 1.35291 1.72986 2.46859 2.79305 3.01922 3.13308 3.24839 3.33038 3.36602 3.82502 4.00284 4.06285 4.19385 4.37369 4.61338 4.77276 4.83925 4.90238 5.01686 5.08253 5.18428 5.24873 5.28540 5.31584 5.37368 5.42569 5.59280 5.61906 5.68010 5.72870 5.81414 5.84781 5.92893 6.02384 6.11671 6.14044 6.20979 6.22956 6.39528 6.50195 6.54773 6.57763 6.71659 6.73690 6.80345 6.87734 6.88538 7.24433 7.26400 7.45135 7.50412 7.55941 7.64311 7.84763 8.15668 8.27112 8.89625 9.48869 10.99372 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.008931 B = 0.003386 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.253753 B = 8268.431002 C = 9659.167623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.121 3.879 3 N -0.589 5.589 4 H 0.416 0.584 5 C 0.091 3.909 6 C -0.133 4.133 7 C -0.103 4.103 8 C -0.154 4.154 9 C -0.053 4.053 10 C -0.071 4.071 11 C -0.162 4.162 12 C 0.240 3.760 13 O -0.519 6.519 14 C -0.184 4.184 15 C -0.046 4.046 16 C -0.159 4.159 17 C -0.074 4.074 18 C -0.141 4.141 19 C 0.173 3.827 20 N -0.544 5.544 21 C 0.109 3.891 22 C 0.014 3.986 23 C -0.524 4.524 24 H 0.059 0.941 25 C 0.061 3.939 26 N -0.890 5.890 27 Si 0.895 3.105 28 H -0.271 1.271 29 H -0.283 1.283 30 H -0.283 1.283 31 C 0.502 3.498 32 O -0.472 6.472 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.381 0.619 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.021 0.979 48 H 0.021 0.979 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.801 0.817 -18.737 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.012 3.988 3 N -0.192 5.192 4 H 0.253 0.747 5 C -0.015 4.015 6 C -0.154 4.154 7 C -0.122 4.122 8 C -0.173 4.173 9 C -0.072 4.072 10 C -0.076 4.076 11 C -0.169 4.169 12 C 0.195 3.805 13 O -0.323 6.323 14 C -0.187 4.187 15 C -0.064 4.064 16 C -0.178 4.178 17 C -0.093 4.093 18 C -0.162 4.162 19 C 0.075 3.925 20 N -0.266 5.266 21 C -0.011 4.011 22 C -0.024 4.024 23 C -0.563 4.563 24 H 0.077 0.923 25 C -0.141 4.141 26 N -0.529 5.529 27 Si 0.723 3.277 28 H -0.196 1.196 29 H -0.209 1.209 30 H -0.209 1.209 31 C 0.288 3.712 32 O -0.343 6.343 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.228 0.772 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.039 0.961 48 H 0.039 0.961 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.457 1.583 -17.993 19.944 hybrid contribution -1.176 -0.152 1.191 1.680 sum 7.281 1.430 -16.802 18.367 Atomic orbital electron populations 1.21069 0.87263 1.04439 1.05028 1.19928 0.93337 0.85013 1.00496 1.41641 1.04021 1.07964 1.65582 0.74698 1.18228 0.84492 0.94103 1.04641 1.19936 0.89653 0.98713 1.07106 1.20742 0.96442 0.94470 1.00561 1.20626 0.97951 0.93873 1.04856 1.20419 0.90097 1.00240 0.96427 1.18794 0.92605 0.91297 1.04858 1.18722 0.91583 0.90096 1.16513 1.18224 0.85047 0.88642 0.88585 1.86596 1.40526 1.21039 1.84147 1.20254 0.95435 1.07943 0.95094 1.20210 0.96372 0.96645 0.93185 1.21001 0.92863 1.03964 0.99966 1.20916 0.99477 0.96730 0.92181 1.20530 0.93876 1.05163 0.96662 1.18331 0.93981 0.95617 0.84570 1.46342 1.10107 1.61042 1.09108 1.22185 0.94998 0.99831 0.84059 1.19400 0.96001 0.92137 0.94863 1.21053 1.32435 0.93380 1.09387 0.92298 1.24984 0.96367 0.94813 0.97926 1.69978 1.43679 1.00972 1.38265 0.86487 0.79536 0.79036 0.82671 1.19595 1.20900 1.20910 1.21204 0.81697 0.77184 0.91098 1.90752 1.54682 1.50176 1.38686 0.89413 0.91316 0.87928 0.86494 0.86072 0.86270 0.85338 0.77188 0.85637 0.85589 0.85315 0.84979 0.90664 0.90248 0.96058 0.96067 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 9.54 36.01 0.34 -1.38 16 2 C 0.12 1.87 6.99 -81.77 -0.57 1.29 16 3 N -0.59 -7.97 6.07 -6.95 -0.04 -8.01 16 4 H 0.42 4.25 8.96 -40.82 -0.37 3.88 16 5 C 0.09 1.36 7.28 -83.99 -0.61 0.74 16 6 C -0.13 -1.67 10.08 -39.43 -0.40 -2.07 16 7 C -0.10 -1.21 10.01 -39.54 -0.40 -1.61 16 8 C -0.15 -1.97 9.97 -39.94 -0.40 -2.37 16 9 C -0.05 -0.82 9.64 -39.64 -0.38 -1.20 16 10 C -0.07 -1.19 6.17 -105.14 -0.65 -1.83 16 11 C -0.16 -2.72 5.19 -102.71 -0.53 -3.26 16 12 C 0.24 3.86 1.33 -93.52 -0.12 3.73 16 13 O -0.52 -7.37 11.49 -35.23 -0.40 -7.78 16 14 C -0.18 -2.54 3.04 -104.37 -0.32 -2.86 16 15 C -0.05 -0.52 8.79 -39.73 -0.35 -0.86 16 16 C -0.16 -1.54 10.00 -39.50 -0.39 -1.94 16 17 C -0.07 -0.77 10.02 -39.67 -0.40 -1.17 16 18 C -0.14 -1.87 9.74 -39.27 -0.38 -2.25 16 19 C 0.17 2.63 5.73 -83.69 -0.48 2.15 16 20 N -0.54 -9.96 2.73 -113.26 -0.31 -10.27 16 21 C 0.11 2.22 5.67 -4.05 -0.02 2.20 16 22 C 0.01 0.35 5.30 -27.89 -0.15 0.20 16 23 C -0.52 -14.35 9.11 -34.45 -0.31 -14.67 16 24 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 25 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 26 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 27 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 28 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 31 C 0.50 9.80 7.19 -10.83 -0.08 9.73 16 32 O -0.47 -10.98 17.67 5.56 0.10 -10.88 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.42 3.44 -51.93 -0.18 1.24 16 36 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.13 1.94 7.05 -52.49 -0.37 1.57 16 40 H 0.38 4.04 9.02 45.56 0.41 4.45 16 41 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.13 1.77 7.70 -52.49 -0.40 1.37 16 45 H 0.07 1.37 7.61 -51.92 -0.40 0.98 16 46 H 0.08 1.69 7.95 -51.93 -0.41 1.27 16 47 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 407.05 15.07 6.13 6.13 Total: -1.00 -34.57 407.05 -10.99 -45.56 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.49 Total: 10.31 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -6.70 Total: -15.80 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.38 Total: -43.76 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.31 Total: -18.66 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.57 -10.99 -45.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002212095.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.696 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds