Wall clock time and date at job start Tue Mar 31 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31530 * 1 3 3 Si 1.86799 * 119.99880 * 2 1 4 4 H 1.48500 * 109.47055 * 270.00062 * 3 2 1 5 5 H 1.48494 * 109.47125 * 30.00463 * 3 2 1 6 6 H 1.48503 * 109.46484 * 150.00250 * 3 2 1 7 7 C 1.38698 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99680 * 179.97438 * 7 2 1 9 9 O 1.34814 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.35609 * 116.99705 * 185.05840 * 9 7 2 11 11 C 1.39461 * 119.71013 * 174.42707 * 10 9 7 12 12 C 1.36527 * 120.30442 * 180.02562 * 11 10 9 13 13 C 1.39595 * 119.76335 * 359.97438 * 12 11 10 14 14 C 1.40587 * 120.41405 * 359.97438 * 13 12 11 15 15 C 1.38582 * 119.71028 * 354.44348 * 10 9 7 16 16 O 1.34783 * 120.31449 * 179.97438 * 14 13 12 17 17 C 1.33523 * 123.29782 * 359.97438 * 16 14 13 18 18 C 1.50699 * 118.72368 * 180.28207 * 17 16 14 19 19 F 1.39897 * 109.47265 * 269.73581 * 18 17 16 20 20 F 1.39897 * 109.46882 * 29.73336 * 18 17 16 21 21 F 1.39904 * 109.47220 * 149.73607 * 18 17 16 22 22 C 1.35835 * 122.55344 * 0.02562 * 17 16 14 23 23 C 1.48317 * 120.64111 * 180.02562 * 22 17 16 24 24 C 1.39372 * 120.12320 * 294.72772 * 23 22 17 25 25 C 1.38013 * 119.87142 * 179.72105 * 24 23 22 26 26 C 1.38330 * 120.12016 * 0.55385 * 25 24 23 27 27 C 1.38327 * 120.25675 * 359.72157 * 26 25 24 28 28 C 1.38013 * 120.12296 * 359.97438 * 27 26 25 29 29 C 1.47283 * 118.71758 * 359.97438 * 22 17 16 30 30 O 1.21893 * 121.61981 * 179.97438 * 29 22 17 31 31 H 0.97000 * 119.99894 * 359.97438 * 1 2 3 32 32 H 1.08005 * 119.84857 * 359.97438 * 11 10 9 33 33 H 1.07998 * 120.11761 * 179.97438 * 12 11 10 34 34 H 1.07998 * 120.09373 * 359.97438 * 15 10 9 35 35 H 1.07997 * 120.06801 * 359.97438 * 24 23 22 36 36 H 1.07997 * 119.93833 * 180.24988 * 25 24 23 37 37 H 1.08004 * 119.87132 * 179.74431 * 26 25 24 38 38 H 1.07999 * 119.93858 * 180.02562 * 27 26 25 39 39 H 1.07997 * 120.06100 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0087 -1.2012 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3346 -2.3687 -0.0016 10 6 2.0690 -3.5037 0.1045 11 6 1.4252 -4.7347 0.2266 12 6 2.1526 -5.8850 0.3347 13 6 3.5473 -5.8266 0.3222 14 6 4.2069 -4.5912 0.1985 15 6 3.4528 -3.4302 0.0909 16 8 5.5536 -4.5371 0.1871 17 6 6.3315 -5.6175 0.2897 18 6 7.8275 -5.4371 0.2718 19 9 8.2906 -5.5124 -1.0461 20 9 8.1529 -4.1873 0.8097 21 9 8.4279 -6.4440 1.0353 22 6 5.8267 -6.8724 0.4147 23 6 6.7306 -8.0430 0.5262 24 6 7.5526 -8.3963 -0.5424 25 6 8.3958 -9.4832 -0.4309 26 6 8.4177 -10.2281 0.7344 27 6 7.5999 -9.8855 1.7961 28 6 6.7572 -8.7970 1.6981 29 6 4.3646 -7.0480 0.4385 30 8 3.8550 -8.1498 0.5481 31 1 -0.4850 0.8401 0.0004 32 1 0.3460 -4.7783 0.2366 33 1 1.6509 -6.8366 0.4296 34 1 3.9433 -2.4727 -0.0042 35 1 7.5328 -7.8183 -1.4545 36 1 9.0362 -9.7555 -1.2568 37 1 9.0762 -11.0804 0.8158 38 1 7.6214 -10.4705 2.7037 39 1 6.1194 -8.5301 2.5278 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002400141.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:38 Heat of formation + Delta-G solvation = -155.051511 kcal Electronic energy + Delta-G solvation = -33995.210825 eV Core-core repulsion = 28806.506752 eV Total energy + Delta-G solvation = -5188.704073 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.075 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.51037 -48.00977 -47.95093 -41.63076 -39.35636 -39.08420 -38.21554 -36.31380 -34.01894 -32.74220 -31.07713 -30.93880 -30.14763 -29.45486 -27.07837 -25.74078 -24.13760 -23.14012 -22.65547 -22.30616 -21.49292 -19.65893 -19.16762 -18.87922 -18.52566 -18.20532 -17.79492 -16.69766 -16.51783 -16.22487 -15.84331 -15.25384 -15.22370 -14.97536 -14.80595 -14.71945 -14.61397 -14.36679 -14.17745 -14.05991 -14.04959 -13.99206 -13.78631 -13.55218 -13.51953 -13.49737 -12.99070 -12.82018 -12.42388 -12.09313 -11.98120 -11.58623 -11.47289 -11.29611 -11.09134 -11.07106 -10.67573 -9.91949 -9.80130 -9.59727 -9.21087 -9.04678 -8.77876 -8.15718 -7.79116 -6.88184 -4.43977 0.32471 1.09010 1.28495 1.31613 1.54740 1.90703 2.67523 2.89295 2.94461 3.00162 3.07992 3.28188 3.59746 3.65697 3.88303 3.93908 4.06709 4.18153 4.53379 4.69086 4.78501 4.80557 4.83139 4.92633 5.00406 5.11498 5.34272 5.35747 5.45004 5.67237 5.75331 5.82573 5.90298 5.97151 6.23088 6.29667 6.34812 6.36097 6.38585 6.64818 6.78499 6.83194 6.96571 7.02282 7.41861 7.55873 7.76910 8.54976 9.14467 10.26546 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.002734 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.800362 B =10238.407456 C =11714.114113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.046 3.954 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.395 4.395 8 H 0.104 0.896 9 O -0.140 6.140 10 C 0.195 3.805 11 C -0.195 4.195 12 C 0.006 3.994 13 C -0.313 4.313 14 C 0.198 3.802 15 C -0.263 4.263 16 O -0.207 6.207 17 C 0.056 3.944 18 C 0.529 3.471 19 F -0.161 7.161 20 F -0.161 7.161 21 F -0.147 7.147 22 C -0.171 4.171 23 C -0.031 4.031 24 C -0.110 4.110 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.117 4.117 28 C -0.084 4.084 29 C 0.438 3.562 30 O -0.468 6.468 31 H 0.279 0.721 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.990 -11.840 1.023 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.121 0.879 9 O -0.039 6.039 10 C 0.136 3.864 11 C -0.214 4.214 12 C -0.013 4.013 13 C -0.316 4.316 14 C 0.154 3.846 15 C -0.283 4.283 16 O -0.112 6.112 17 C 0.007 3.993 18 C 0.475 3.525 19 F -0.143 7.143 20 F -0.142 7.142 21 F -0.128 7.128 22 C -0.175 4.175 23 C -0.031 4.031 24 C -0.128 4.128 25 C -0.133 4.133 26 C -0.134 4.134 27 C -0.135 4.135 28 C -0.102 4.102 29 C 0.323 3.677 30 O -0.349 6.349 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.167 0.833 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.372 -11.904 1.035 18.691 hybrid contribution 0.651 0.854 -0.073 1.076 sum 15.024 -11.051 0.962 18.675 Atomic orbital electron populations 1.70014 1.06286 1.28958 1.41686 1.25496 0.95977 0.99451 0.95341 0.85585 0.79160 0.78896 0.79262 1.19317 1.19787 1.18583 1.21635 0.92456 0.80204 1.52631 0.87909 1.83957 1.34748 1.11901 1.73296 1.19089 0.88686 0.88090 0.90527 1.20098 1.00615 0.89640 1.11025 1.20247 0.90807 0.98028 0.92181 1.19835 0.95634 0.92064 1.24080 1.18894 0.76379 0.94361 0.95006 1.20225 0.92717 0.96847 1.18484 1.82636 1.18641 1.31868 1.78034 1.21719 0.89352 0.86654 1.01621 1.17565 0.85166 0.74871 0.74943 1.93271 1.89713 1.95912 1.35363 1.93281 1.93617 1.41442 1.85868 1.93328 1.84094 1.59848 1.75551 1.21484 0.97386 0.91438 1.07148 1.18193 0.95340 0.94390 0.95175 1.21282 0.95865 0.97968 0.97669 1.20996 0.98915 0.95337 0.98065 1.21200 0.99082 0.99582 0.93535 1.21057 0.96441 0.96974 0.99010 1.21090 0.97902 0.94515 0.96678 1.19426 0.85582 0.88662 0.74051 1.90666 1.75268 1.27496 1.41506 0.91085 0.84879 0.84665 0.83332 0.85897 0.85735 0.85986 0.85722 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.98 13.67 55.48 0.76 -21.23 16 2 C 0.05 1.12 5.49 -17.51 -0.10 1.03 16 3 Si 0.95 18.32 29.55 -169.99 -5.02 13.30 16 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.39 -9.75 9.48 30.90 0.29 -9.46 16 8 H 0.10 2.33 5.17 -52.49 -0.27 2.06 16 9 O -0.14 -3.52 9.74 0.53 0.01 -3.52 16 10 C 0.20 4.19 6.65 -39.00 -0.26 3.93 16 11 C -0.19 -3.66 9.92 -39.74 -0.39 -4.06 16 12 C 0.01 0.11 9.61 -39.69 -0.38 -0.27 16 13 C -0.31 -5.75 5.89 -104.77 -0.62 -6.37 16 14 C 0.20 3.67 6.77 -38.47 -0.26 3.41 16 15 C -0.26 -5.26 9.11 -39.22 -0.36 -5.61 16 16 O -0.21 -3.51 9.30 6.41 0.06 -3.45 16 17 C 0.06 0.86 6.48 -35.17 -0.23 0.63 16 18 C 0.53 6.97 2.84 36.01 0.10 7.07 16 19 F -0.16 -2.00 16.22 2.25 0.04 -1.97 16 20 F -0.16 -2.16 17.06 2.25 0.04 -2.12 16 21 F -0.15 -1.85 13.54 2.25 0.03 -1.82 16 22 C -0.17 -2.68 5.42 -102.94 -0.56 -3.24 16 23 C -0.03 -0.43 2.88 -104.90 -0.30 -0.73 16 24 C -0.11 -1.35 7.83 -39.24 -0.31 -1.66 16 25 C -0.12 -1.18 10.03 -39.63 -0.40 -1.58 16 26 C -0.12 -1.12 10.04 -39.51 -0.40 -1.52 16 27 C -0.12 -1.23 10.03 -39.63 -0.40 -1.63 16 28 C -0.08 -1.08 9.59 -39.24 -0.38 -1.45 16 29 C 0.44 7.79 7.15 -32.17 -0.23 7.56 16 30 O -0.47 -9.01 16.99 5.02 0.09 -8.92 16 31 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.13 2.30 8.06 -52.48 -0.42 1.88 16 33 H 0.14 2.13 7.80 -52.49 -0.41 1.72 16 34 H 0.15 2.93 5.59 -52.49 -0.29 2.63 16 35 H 0.12 1.42 7.33 -52.49 -0.38 1.04 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -27.52 357.10 -6.40 -33.92 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -2.61 Total: 4.39 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -5.16 Total: -13.96 kcal Atomic # 7 Polarization: -21.98 SS G_CDS: 0.76 Total: -21.23 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.15 Total: -15.89 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.11 Total: -5.91 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.30 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.52 -6.40 -33.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002400141.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.135 kcal (2) G-P(sol) polarization free energy of solvation -27.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds