Wall clock time and date at job start Tue Mar 31 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38107 * 120.40192 * 2 1 4 4 C 1.39621 * 118.33608 * 179.97438 * 3 2 1 5 5 N 1.38545 * 120.53619 * 179.97438 * 4 3 2 6 6 S 1.65599 * 120.00228 * 179.97438 * 5 4 3 7 7 O 1.42100 * 106.39947 * 311.46345 * 6 5 4 8 8 O 1.42100 * 106.40171 * 178.54389 * 6 5 4 9 9 C 1.76197 * 107.21688 * 65.00292 * 6 5 4 10 10 C 1.38326 * 119.91545 * 89.99890 * 9 6 5 11 11 C 1.38060 * 120.08474 * 179.74156 * 10 9 6 12 12 C 1.39033 * 119.91533 * 0.26076 * 11 10 9 13 13 N 1.39522 * 120.08253 * 180.02562 * 12 11 10 14 14 C 1.34779 * 120.00365 * 33.38931 * 13 12 11 15 15 O 1.21744 * 119.99717 * 5.27378 * 14 13 12 16 16 C 1.46169 * 120.00345 * 185.27573 * 14 13 12 17 17 H 1.08000 * 119.99780 * 359.97438 * 16 14 13 18 18 C 1.40118 * 120.00064 * 179.97438 * 16 14 13 19 19 N 1.30635 * 120.00009 * 0.02562 * 18 16 14 20 20 Si 1.86808 * 119.99963 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46957 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46853 * 119.99949 * 20 18 16 23 23 H 1.48496 * 109.47095 * 240.00271 * 20 18 16 24 24 C 1.39026 * 119.83339 * 359.97438 * 12 11 10 25 25 C 1.38065 * 119.91567 * 359.97438 * 24 12 11 26 26 N 1.32995 * 118.93594 * 0.25079 * 4 3 2 27 27 C 1.31746 * 120.68445 * 359.48721 * 26 4 3 28 28 C 1.50700 * 119.08623 * 180.26321 * 27 26 4 29 29 N 1.31788 * 121.83367 * 0.52773 * 27 26 4 30 30 H 1.09006 * 109.47248 * 90.00567 * 1 2 3 31 31 H 1.09004 * 109.47581 * 209.99926 * 1 2 3 32 32 H 1.08990 * 109.47329 * 330.00648 * 1 2 3 33 33 H 1.08005 * 120.83262 * 359.94968 * 3 2 1 34 34 H 0.96998 * 119.99464 * 0.02562 * 5 4 3 35 35 H 1.08001 * 119.95952 * 0.02562 * 10 9 6 36 36 H 1.08003 * 120.04396 * 180.27813 * 11 10 9 37 37 H 0.97005 * 120.00067 * 213.38415 * 13 12 11 38 38 H 0.97006 * 120.00128 * 180.02562 * 19 18 16 39 39 H 1.07992 * 120.04633 * 180.02562 * 24 12 11 40 40 H 1.07997 * 119.95780 * 180.02562 * 25 24 12 41 41 H 1.08997 * 109.47616 * 270.25821 * 28 27 26 42 42 H 1.09005 * 109.46824 * 30.25662 * 28 27 26 43 43 H 1.09001 * 109.47508 * 150.25182 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6012 1.1408 0.0005 5 7 4.3477 2.3080 0.0000 6 16 6.0020 2.2329 0.0013 7 8 6.3611 1.3139 1.0240 8 8 6.4647 3.5760 -0.0342 9 6 6.4919 1.4974 -1.5230 10 6 6.7333 2.2945 -2.6274 11 6 7.1225 1.7223 -3.8221 12 6 7.2664 0.3426 -3.9157 13 7 7.6600 -0.2393 -5.1212 14 6 8.5085 0.4141 -5.9396 15 8 9.0064 1.4670 -5.5851 16 6 8.8307 -0.1413 -7.2527 17 1 8.3893 -1.0756 -7.5669 18 6 9.7124 0.5382 -8.1037 19 7 10.2467 1.6680 -7.7233 20 14 10.1247 -0.1720 -9.7815 21 1 9.3947 -1.4513 -9.9705 22 1 9.7202 0.7891 -10.8388 23 1 11.5865 -0.4181 -9.8692 24 6 7.0181 -0.4557 -2.8049 25 6 6.6303 0.1239 -1.6133 26 7 4.2023 -0.0455 -0.0040 27 6 3.4955 -1.1573 0.0011 28 6 4.2139 -2.4821 0.0017 29 7 2.1777 -1.1433 0.0006 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5137 33 1 1.6862 2.1379 -0.0008 34 1 3.9013 3.1691 -0.0003 35 1 6.6217 3.3662 -2.5539 36 1 7.3152 2.3456 -4.6828 37 1 7.3231 -1.1142 -5.3703 38 1 10.8568 2.1387 -8.3126 39 1 7.1292 -1.5276 -2.8737 40 1 6.4376 -0.4955 -0.7498 41 1 4.3876 -2.8018 -1.0258 42 1 5.1693 -2.3771 0.5159 43 1 3.6047 -3.2257 0.5155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002736520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:55 Heat of formation + Delta-G solvation = -35.514776 kcal Electronic energy + Delta-G solvation = -31547.899019 eV Core-core repulsion = 27106.264641 eV Total energy + Delta-G solvation = -4441.634378 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.104 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.41560 -39.37563 -37.25533 -37.11489 -36.55403 -35.81659 -34.66051 -33.71725 -32.62863 -31.78314 -30.55990 -29.46173 -29.38721 -28.28672 -26.47047 -23.45147 -22.84768 -22.64625 -22.34194 -20.22987 -19.82872 -18.36228 -18.16487 -17.79476 -17.33882 -16.66764 -16.31584 -15.79806 -15.74319 -15.71493 -15.30374 -14.60320 -14.46136 -14.10394 -14.08030 -13.72852 -13.39100 -13.34178 -13.23075 -13.05483 -12.89707 -12.77066 -12.51939 -12.50339 -12.32929 -12.19992 -12.05210 -11.93532 -11.85143 -11.42340 -11.23418 -11.11675 -10.90239 -10.78602 -10.60008 -10.41789 -10.14852 -9.74215 -9.53402 -9.20850 -9.07088 -8.61999 -7.95255 -7.50514 -6.49150 -4.97808 0.30035 0.68258 0.88758 1.30979 1.84384 2.59316 2.97867 3.06549 3.10994 3.41734 3.56529 3.69896 3.72538 3.86558 4.03244 4.16803 4.35061 4.39544 4.50901 4.65869 4.75951 5.02857 5.13499 5.15779 5.21277 5.27005 5.35320 5.41677 5.47148 5.48162 5.69398 5.70977 5.76668 5.89539 6.00891 6.07224 6.35307 6.39706 6.45907 6.63721 6.83112 6.85587 7.13702 7.19276 7.52454 7.80848 7.89048 7.97257 8.70298 8.98227 10.19130 10.40673 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.002392 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.577730 B =11702.697982 C =12800.975451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.203 3.797 3 C -0.269 4.269 4 C 0.438 3.562 5 N -1.030 6.030 6 S 2.691 3.309 7 O -0.935 6.935 8 O -0.956 6.956 9 C -0.719 4.719 10 C -0.003 4.003 11 C -0.156 4.156 12 C 0.256 3.744 13 N -0.695 5.695 14 C 0.537 3.463 15 O -0.554 6.554 16 C -0.534 4.534 17 H 0.074 0.926 18 C 0.085 3.915 19 N -0.755 5.755 20 Si 0.916 3.084 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.273 1.273 24 C -0.207 4.207 25 C 0.026 3.974 26 N -0.557 5.557 27 C 0.371 3.629 28 C -0.091 4.091 29 N -0.544 5.544 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.435 0.565 35 H 0.131 0.869 36 H 0.146 0.854 37 H 0.397 0.603 38 H 0.274 0.726 39 H 0.126 0.874 40 H 0.144 0.856 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.629 -3.771 13.854 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.059 3.941 3 C -0.296 4.296 4 C 0.196 3.804 5 N -0.774 5.774 6 S 2.786 3.214 7 O -0.924 6.924 8 O -0.946 6.946 9 C -0.812 4.812 10 C -0.024 4.024 11 C -0.178 4.178 12 C 0.153 3.847 13 N -0.336 5.336 14 C 0.344 3.656 15 O -0.435 6.435 16 C -0.570 4.570 17 H 0.093 0.907 18 C -0.137 4.137 19 N -0.383 5.383 20 Si 0.739 3.261 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.230 4.230 25 C 0.006 3.994 26 N -0.280 5.280 27 C 0.103 3.897 28 C -0.149 4.149 29 N -0.262 5.262 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.166 0.834 34 H 0.272 0.728 35 H 0.149 0.851 36 H 0.164 0.836 37 H 0.231 0.769 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.162 0.838 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.932 -3.474 14.616 22.636 hybrid contribution -0.547 0.349 -1.748 1.864 sum -17.479 -3.125 12.868 21.928 Atomic orbital electron populations 1.20784 0.87634 1.04067 1.03826 1.21502 0.97473 0.87461 0.87711 1.22104 0.93072 1.01325 1.13124 1.18037 0.88740 0.85823 0.87784 1.53839 1.28279 1.11359 1.83954 1.01989 0.71157 0.73422 0.74849 1.93580 1.79694 1.64533 1.54631 1.93611 1.77218 1.35977 1.87831 1.29846 1.26707 1.04599 1.20066 1.20674 0.91903 0.98784 0.91053 1.21400 1.02658 0.94475 0.99308 1.18358 0.87005 0.92770 0.86545 1.44502 1.48199 1.22478 1.18400 1.18505 0.77682 0.84707 0.84694 1.90669 1.53852 1.23802 1.75198 1.20893 1.28600 1.09040 0.98430 0.90746 1.25776 0.94149 0.94057 0.99738 1.69982 1.20910 1.11977 1.35383 0.86178 0.78890 0.79793 0.81193 1.18570 1.19883 1.19864 1.20989 1.09875 0.99798 0.92300 1.20663 0.89267 0.92261 0.97218 1.67785 1.41377 0.97363 1.21473 1.22959 0.86217 0.93335 0.87178 1.20687 1.00419 0.89388 1.04438 1.68175 1.09243 1.29935 1.18893 0.89495 0.89769 0.90117 0.83400 0.72838 0.85135 0.83618 0.76874 0.91528 0.85607 0.83844 0.89018 0.88946 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.21 36.01 0.37 -0.20 16 2 C 0.20 1.86 6.81 -82.33 -0.56 1.29 16 3 C -0.27 -2.39 9.71 -39.11 -0.38 -2.77 16 4 C 0.44 5.01 7.35 -154.77 -1.14 3.87 16 5 N -1.03 -10.82 5.84 31.24 0.18 -10.64 16 6 S 2.69 38.66 5.39 -107.50 -0.58 38.08 16 7 O -0.93 -15.42 16.19 -57.17 -0.93 -16.35 16 8 O -0.96 -15.51 17.27 -57.17 -0.99 -16.50 16 9 C -0.72 -11.75 5.79 -39.51 -0.23 -11.98 16 10 C 0.00 -0.06 9.51 -39.61 -0.38 -0.44 16 11 C -0.16 -3.25 8.65 -39.35 -0.34 -3.60 16 12 C 0.26 5.16 6.28 -83.77 -0.53 4.63 16 13 N -0.69 -14.82 5.32 -11.20 -0.06 -14.87 16 14 C 0.54 14.28 7.47 -13.08 -0.10 14.18 16 15 O -0.55 -16.74 12.70 5.15 0.07 -16.68 16 16 C -0.53 -13.99 9.54 -35.69 -0.34 -14.33 16 17 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 18 C 0.08 2.21 5.50 -17.36 -0.10 2.11 16 19 N -0.75 -21.29 11.82 55.55 0.66 -20.64 16 20 Si 0.92 18.85 29.56 -169.99 -5.02 13.83 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.21 -3.48 9.97 -39.35 -0.39 -3.87 16 25 C 0.03 0.42 8.40 -39.61 -0.33 0.09 16 26 N -0.56 -7.12 6.35 -9.97 -0.06 -7.19 16 27 C 0.37 4.28 7.64 -157.24 -1.20 3.07 16 28 C -0.09 -0.78 10.32 36.01 0.37 -0.40 16 29 N -0.54 -5.98 10.27 -7.07 -0.07 -6.06 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 33 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.43 2.95 8.84 -34.47 -0.30 2.64 16 35 H 0.13 2.06 7.61 -52.49 -0.40 1.66 16 36 H 0.15 3.41 6.42 -52.48 -0.34 3.07 16 37 H 0.40 7.08 8.80 -40.82 -0.36 6.72 16 38 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 39 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.14 2.06 6.55 -52.49 -0.34 1.72 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -37.48 384.46 -10.96 -48.43 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.67 Total: 11.11 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -5.27 Total: -8.33 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.64 Total: -59.40 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -1.85 Total: -49.52 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Atomic # 16 Polarization: 38.66 SS G_CDS: -0.58 Total: 38.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.48 -10.96 -48.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002736520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.919 kcal (2) G-P(sol) polarization free energy of solvation -37.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds