Wall clock time and date at job start Tue Mar 31 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31431 * 1 3 3 Si 1.86808 * 119.99989 * 2 1 4 4 H 1.48502 * 109.46879 * 269.99965 * 3 2 1 5 5 H 1.48499 * 109.46908 * 29.99225 * 3 2 1 6 6 H 1.48491 * 109.46975 * 149.99771 * 3 2 1 7 7 C 1.38949 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99988 * 180.02562 * 7 2 1 9 9 N 1.36962 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00447 * 179.97438 * 9 7 2 11 11 O 1.21754 * 119.99620 * 359.97438 * 10 9 7 12 12 C 1.46449 * 120.00345 * 180.02562 * 10 9 7 13 13 C 1.40691 * 126.55709 * 0.02607 * 12 10 9 14 14 N 1.30674 * 108.75425 * 179.97438 * 13 12 10 15 15 N 1.39942 * 109.57573 * 359.97438 * 14 13 12 16 16 C 1.36694 * 108.08980 * 0.02562 * 15 14 13 17 17 N 1.33136 * 120.92812 * 180.02562 * 16 15 14 18 18 C 1.32398 * 120.77467 * 359.97438 * 17 16 15 19 19 C 1.48117 * 120.06127 * 180.02562 * 18 17 16 20 20 C 1.39485 * 120.13389 * 179.71776 * 19 18 17 21 21 C 1.37982 * 119.86138 * 179.74251 * 20 19 18 22 22 C 1.38343 * 120.13572 * 0.54087 * 21 20 19 23 23 C 1.38346 * 120.27285 * 359.73538 * 22 21 20 24 24 C 1.37976 * 120.13630 * 359.97438 * 23 22 21 25 25 C 1.41050 * 119.87329 * 359.97438 * 18 17 16 26 26 C 1.35434 * 119.25341 * 359.96923 * 25 18 17 27 27 C 1.50697 * 120.35811 * 180.02562 * 26 25 18 28 28 F 1.39906 * 109.47057 * 270.04284 * 27 26 25 29 29 F 1.39892 * 109.47666 * 30.04478 * 27 26 25 30 30 F 1.39905 * 109.47309 * 150.05097 * 27 26 25 31 31 H 0.97003 * 120.00096 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99841 * 0.02562 * 9 7 2 33 33 H 1.08008 * 125.62282 * 0.22873 * 13 12 10 34 34 H 1.07998 * 120.06781 * 0.02562 * 20 19 18 35 35 H 1.08004 * 119.92812 * 180.27858 * 21 20 19 36 36 H 1.07997 * 119.86621 * 179.72028 * 22 21 20 37 37 H 1.08001 * 119.93380 * 180.02562 * 23 22 21 38 38 H 1.08005 * 120.06978 * 180.02562 * 24 23 22 39 39 H 1.08005 * 120.37115 * 179.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5458 1.4402 0.7001 7 6 2.0091 -1.2033 0.0005 8 1 3.0891 -1.2033 0.0010 9 7 1.3243 -2.3895 0.0005 10 6 1.9981 -3.5567 0.0005 11 8 3.2156 -3.5567 0.0001 12 6 1.2659 -4.8250 0.0000 13 6 -0.1318 -4.9857 -0.0011 14 7 -0.4079 -6.2629 -0.0019 15 7 0.7818 -6.9998 -0.0019 16 6 1.8268 -6.1186 -0.0006 17 7 3.0862 -6.5506 -0.0008 18 6 3.3579 -7.8464 -0.0019 19 6 4.7648 -8.3095 -0.0015 20 6 5.0527 -9.6743 0.0033 21 6 6.3654 -10.0995 -0.0018 22 6 7.3948 -9.1753 -0.0004 23 6 7.1157 -7.8203 0.0006 24 6 5.8072 -7.3827 -0.0003 25 6 2.3050 -8.7849 -0.0022 26 6 1.0247 -8.3433 -0.0008 27 6 -0.1194 -9.3242 -0.0005 28 9 -0.4739 -9.6275 -1.3195 29 9 0.2702 -10.4950 0.6586 30 9 -1.2168 -8.7606 0.6593 31 1 -0.4850 0.8401 -0.0004 32 1 0.3543 -2.3895 -0.0002 33 1 -0.8571 -4.1853 -0.0052 34 1 4.2499 -10.3967 0.0064 35 1 6.5895 -11.1560 -0.0026 36 1 8.4207 -9.5130 0.0001 37 1 7.9236 -7.1036 0.0013 38 1 5.5904 -6.3246 0.0000 39 1 2.5174 -9.8439 -0.0035 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002739019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:30 Heat of formation + Delta-G solvation = -28.135846 kcal Electronic energy + Delta-G solvation = -33265.477889 eV Core-core repulsion = 28146.862794 eV Total energy + Delta-G solvation = -5118.615095 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.089 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.59275 -48.14249 -47.98470 -42.43723 -39.63556 -38.27118 -37.50552 -34.74696 -33.97405 -32.59707 -31.38031 -31.17412 -30.30566 -29.15248 -27.47536 -25.50496 -24.45267 -23.66738 -22.43471 -22.10005 -21.68226 -19.88359 -19.10932 -18.96255 -18.42540 -17.89165 -17.85966 -17.27335 -16.99521 -16.19996 -15.78851 -15.49135 -14.94196 -14.86274 -14.76166 -14.75402 -14.58142 -14.45345 -14.15410 -14.12898 -13.97526 -13.76804 -13.62280 -13.51564 -13.26731 -13.13054 -12.95533 -12.71512 -12.37195 -11.68003 -11.62847 -11.48555 -11.40202 -11.18762 -11.12152 -10.45193 -10.32195 -9.96644 -9.93439 -9.60659 -9.15660 -8.92081 -8.47348 -8.07737 -7.80474 -6.56119 -3.84901 -0.24037 0.36184 1.20772 1.33181 1.56031 2.01408 2.36092 3.00340 3.01665 3.19106 3.22273 3.28203 3.41281 3.58165 3.70078 3.87104 4.01717 4.12427 4.32977 4.35483 4.52875 4.61888 4.76585 4.79087 4.92130 5.00962 5.19885 5.22228 5.28652 5.29833 5.38772 5.49843 5.70219 5.86291 6.11029 6.20035 6.23502 6.33979 6.35791 6.51287 6.73206 7.28859 7.43072 7.53650 7.96563 8.51877 9.06997 9.42846 10.00737 10.60973 Molecular weight = 376.09amu Principal moments of inertia in cm(-1) A = 0.008016 B = 0.003099 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.376671 B = 9033.485661 C =12351.371391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.021 3.979 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.283 4.283 8 H 0.109 0.891 9 N -0.547 5.547 10 C 0.506 3.494 11 O -0.581 6.581 12 C -0.207 4.207 13 C 0.109 3.891 14 N -0.292 5.292 15 N -0.307 5.307 16 C 0.288 3.712 17 N -0.386 5.386 18 C 0.215 3.785 19 C -0.056 4.056 20 C -0.093 4.093 21 C -0.127 4.127 22 C -0.101 4.101 23 C -0.125 4.125 24 C -0.063 4.063 25 C -0.143 4.143 26 C 0.087 3.913 27 C 0.524 3.476 28 F -0.162 7.162 29 F -0.163 7.163 30 F -0.150 7.150 31 H 0.275 0.725 32 H 0.392 0.608 33 H 0.211 0.789 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.147 0.853 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.798 -22.202 0.040 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.413 4.413 8 H 0.127 0.873 9 N -0.181 5.181 10 C 0.293 3.707 11 O -0.466 6.466 12 C -0.223 4.223 13 C -0.071 4.071 14 N -0.115 5.115 15 N -0.080 5.080 16 C 0.058 3.942 17 N -0.095 5.095 18 C 0.052 3.948 19 C -0.057 4.057 20 C -0.113 4.113 21 C -0.145 4.145 22 C -0.120 4.120 23 C -0.142 4.142 24 C -0.083 4.083 25 C -0.168 4.168 26 C -0.030 4.030 27 C 0.468 3.532 28 F -0.143 7.143 29 F -0.144 7.144 30 F -0.131 7.131 31 H 0.085 0.915 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.164 0.836 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.894 -21.943 0.046 22.482 hybrid contribution -0.589 0.654 -0.016 0.881 sum 4.304 -21.288 0.030 21.719 Atomic orbital electron populations 1.69611 1.06065 1.28702 1.48594 1.25356 0.95724 1.00020 0.97128 0.85779 0.79299 0.80271 0.78569 1.20204 1.20771 1.19169 1.19843 0.93752 0.81955 1.45763 0.87340 1.41738 1.09217 1.04396 1.62743 1.16329 0.87033 0.81644 0.85660 1.90683 1.12573 1.86567 1.56766 1.20213 0.92096 0.92167 1.17854 1.24365 0.95489 0.93757 0.93486 1.77633 0.99413 1.04773 1.29681 1.46560 1.08914 1.03583 1.48961 1.20120 0.82084 0.90438 1.01557 1.68107 1.16607 1.14829 1.09975 1.20139 0.93394 0.87392 0.93852 1.18236 0.88998 0.93531 1.04914 1.21195 0.97307 0.93897 0.98901 1.21024 0.92216 0.99847 1.01457 1.21360 0.99403 0.93322 0.97950 1.21231 0.96669 0.95928 1.00420 1.21605 0.91543 1.01170 0.93965 1.21612 0.89294 1.03495 1.02439 1.20143 0.94664 0.82264 1.05964 1.17606 0.81510 0.79116 0.74951 1.93289 1.92431 1.93400 1.35197 1.93242 1.90858 1.49327 1.80972 1.93332 1.54876 1.84454 1.80485 0.91466 0.77436 0.77246 0.85470 0.85465 0.85748 0.85259 0.83566 0.80631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.19 13.05 55.50 0.72 -22.46 16 2 C 0.02 0.54 5.50 -17.46 -0.10 0.44 16 3 Si 0.93 20.32 29.55 -169.99 -5.02 15.30 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.28 -7.69 9.68 -15.00 -0.15 -7.83 16 8 H 0.11 3.07 7.15 -52.49 -0.38 2.70 16 9 N -0.55 -13.76 5.27 -12.23 -0.06 -13.82 16 10 C 0.51 12.61 7.73 -12.96 -0.10 12.51 16 11 O -0.58 -16.31 16.31 5.14 0.08 -16.22 16 12 C -0.21 -4.35 6.17 -104.62 -0.65 -5.00 16 13 C 0.11 1.92 11.44 -17.12 -0.20 1.73 16 14 N -0.29 -5.09 11.35 30.77 0.35 -4.74 16 15 N -0.31 -5.27 3.82 -8.27 -0.03 -5.30 16 16 C 0.29 5.65 7.74 -155.88 -1.21 4.44 16 17 N -0.39 -7.18 9.36 -8.56 -0.08 -7.26 16 18 C 0.21 3.04 6.77 -82.50 -0.56 2.48 16 19 C -0.06 -0.67 5.88 -104.91 -0.62 -1.29 16 20 C -0.09 -0.81 9.43 -39.21 -0.37 -1.18 16 21 C -0.13 -0.96 10.03 -39.64 -0.40 -1.36 16 22 C -0.10 -0.81 10.04 -39.50 -0.40 -1.21 16 23 C -0.12 -1.24 10.03 -39.64 -0.40 -1.63 16 24 C -0.06 -0.80 9.58 -39.21 -0.38 -1.18 16 25 C -0.14 -1.64 8.76 -39.52 -0.35 -1.99 16 26 C 0.09 1.19 6.35 -81.50 -0.52 0.67 16 27 C 0.52 6.21 3.42 36.00 0.12 6.34 16 28 F -0.16 -1.92 17.30 2.25 0.04 -1.88 16 29 F -0.16 -1.57 16.47 2.25 0.04 -1.53 16 30 F -0.15 -2.05 16.06 2.25 0.04 -2.01 16 31 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.39 9.18 6.81 -40.82 -0.28 8.91 16 33 H 0.21 3.05 7.46 -52.48 -0.39 2.65 16 34 H 0.13 0.74 6.22 -52.49 -0.33 0.41 16 35 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.15 2.21 7.55 -52.48 -0.40 1.81 16 39 H 0.18 1.22 5.80 -52.48 -0.30 0.92 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -32.95 361.90 -7.19 -40.14 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -2.48 Total: 8.39 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -6.24 Total: 5.95 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.90 Total: -53.58 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.08 Total: -16.22 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.11 Total: -5.42 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.95 -7.19 -40.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002739019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.004 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds