Wall clock time and date at job start Tue Mar 31 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35999 * 117.00309 * 2 1 4 4 C 1.38658 * 119.99205 * 359.73051 * 3 2 1 5 5 C 1.38430 * 120.31039 * 179.72385 * 4 3 2 6 6 I 2.09502 * 119.85505 * 180.27724 * 5 4 3 7 7 C 1.37988 * 120.29254 * 0.54192 * 5 4 3 8 8 C 1.39696 * 119.98301 * 359.73677 * 7 5 4 9 9 C 1.47453 * 120.15377 * 180.02562 * 8 7 5 10 10 N 1.29745 * 119.99940 * 179.97438 * 9 8 7 11 11 N 1.40104 * 119.99859 * 179.97438 * 10 9 8 12 12 C 1.46497 * 119.99832 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46945 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00609 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99856 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00380 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00007 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47335 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47554 * 119.99886 * 17 15 13 20 20 H 1.48505 * 109.47097 * 239.99619 * 17 15 13 21 21 C 1.38908 * 119.99553 * 179.97438 * 3 2 1 22 22 O 1.35949 * 120.14699 * 359.97438 * 21 3 2 23 23 H 1.09001 * 109.47103 * 300.00173 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99677 * 1 2 3 25 25 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.08009 * 119.84552 * 359.97438 * 4 3 2 27 27 H 1.07998 * 120.00777 * 179.74668 * 7 5 4 28 28 H 1.08002 * 120.00092 * 359.97315 * 9 8 7 29 29 H 0.96997 * 120.00007 * 0.02562 * 11 10 9 30 30 H 1.09006 * 109.47254 * 299.99971 * 12 11 10 31 31 H 1.08998 * 109.47362 * 59.99894 * 12 11 10 32 32 H 0.97000 * 120.00081 * 180.02562 * 16 15 13 33 33 H 0.96698 * 113.99828 * 89.99768 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2913 2.3745 -0.0056 5 6 1.9129 3.6114 0.0001 6 53 0.7578 5.3592 0.0002 7 6 3.2900 3.6983 0.0002 8 6 4.0630 2.5346 0.0001 9 6 5.5348 2.6231 0.0008 10 7 6.2498 1.5404 0.0011 11 7 7.6483 1.6244 0.0012 12 6 8.4555 0.4019 0.0011 13 6 9.9180 0.7657 0.0019 14 1 10.2163 1.8036 0.0020 15 6 10.8752 -0.2267 0.0014 16 7 10.5120 -1.4907 0.0007 17 14 12.6880 0.2242 0.0031 18 1 12.8305 1.7023 0.0043 19 1 13.3366 -0.3370 1.2154 20 1 13.3381 -0.3344 -1.2096 21 6 3.4337 1.2842 0.0005 22 8 4.1769 0.1459 0.0016 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3150 -0.0105 27 1 3.7702 4.6656 0.0005 28 1 6.0178 3.5891 0.0009 29 1 8.0820 2.4920 0.0014 30 1 8.2269 -0.1846 0.8910 31 1 8.2271 -0.1843 -0.8889 32 1 11.1855 -2.1888 0.0008 33 1 4.3923 -0.1840 -0.8815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002762514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:55 Heat of formation + Delta-G solvation = -13.547466 kcal Electronic energy + Delta-G solvation = -18864.660765 eV Core-core repulsion = 15557.789241 eV Total energy + Delta-G solvation = -3306.871523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 376.007 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.49811 -39.12486 -37.70860 -37.61963 -35.37806 -33.54458 -32.09530 -31.15379 -29.01099 -28.30820 -27.43968 -24.91911 -23.63568 -23.09706 -21.40035 -19.51536 -18.85661 -18.37687 -17.90494 -16.96382 -16.89026 -16.59702 -16.23145 -15.81399 -15.09340 -14.92004 -14.83014 -14.61241 -14.10512 -13.77990 -13.39876 -13.04959 -13.00667 -12.77966 -12.65639 -12.23919 -12.20370 -12.04958 -11.73857 -11.47724 -11.09682 -10.93700 -10.79079 -10.73683 -10.03333 -9.21734 -8.51089 -8.30492 -6.45358 -0.29021 0.01224 0.10879 1.41645 1.42616 1.55750 1.56119 2.09635 2.23542 2.42926 2.57507 3.04592 3.24451 3.67347 3.97727 4.03859 4.10392 4.28237 4.38888 4.45660 4.66068 4.73213 4.79612 4.93251 5.07520 5.14675 5.34055 5.38629 5.47170 5.67917 6.00373 6.23360 6.26461 6.75530 6.86858 7.26460 7.69836 8.81807 Molecular weight = 376.01amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.002212 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.080362 B =12653.181346 C =14160.236871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.326 6.326 3 C 0.100 3.900 4 C -0.156 4.156 5 C -0.077 4.077 6 I -0.013 7.013 7 C -0.088 4.088 8 C -0.017 4.017 9 C 0.014 3.986 10 N -0.210 5.210 11 N -0.641 5.641 12 C 0.304 3.696 13 C -0.556 4.556 14 H 0.073 0.927 15 C 0.009 3.991 16 N -0.927 5.927 17 Si 0.983 3.017 18 H -0.259 1.259 19 H -0.277 1.277 20 H -0.275 1.275 21 C 0.092 3.908 22 O -0.482 6.482 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.160 0.840 27 H 0.155 0.845 28 H 0.132 0.868 29 H 0.377 0.623 30 H -0.017 1.017 31 H -0.011 1.011 32 H 0.270 0.730 33 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.669 15.543 -1.742 31.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.052 3.948 4 C -0.179 4.179 5 C -0.217 4.217 6 I 0.136 6.864 7 C -0.111 4.111 8 C -0.021 4.021 9 C -0.195 4.195 10 N -0.021 5.021 11 N -0.380 5.380 12 C 0.181 3.819 13 C -0.595 4.595 14 H 0.091 0.909 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.806 3.194 18 H -0.183 1.183 19 H -0.202 1.202 20 H -0.201 1.201 21 C 0.043 3.957 22 O -0.292 6.292 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.136 0.864 26 H 0.177 0.823 27 H 0.172 0.828 28 H 0.149 0.851 29 H 0.215 0.785 30 H 0.001 0.999 31 H 0.007 0.993 32 H 0.079 0.921 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -28.239 15.235 -1.138 32.107 hybrid contribution 1.855 -0.205 -0.435 1.916 sum -26.385 15.030 -1.573 30.406 Atomic orbital electron populations 1.23443 0.76202 1.05850 1.02562 1.86186 1.23595 1.25649 1.88497 1.19314 0.91044 0.85624 0.98784 1.21219 1.01084 0.89698 1.05872 1.23966 0.95368 0.96021 1.06324 1.96826 1.66350 1.24502 1.98733 1.21021 0.91639 0.97939 1.00477 1.18613 0.90587 0.92085 1.00849 1.23848 0.92151 0.95172 1.08339 1.74230 0.93177 1.29157 1.05541 1.48575 0.98036 1.08632 1.82710 1.18322 0.88137 0.81748 0.93651 1.21559 0.90788 0.94119 1.52991 0.90923 1.25954 1.04837 0.94437 0.93867 1.70112 1.36029 1.00458 1.49911 0.85146 0.77452 0.78919 0.77904 1.18321 1.20249 1.20086 1.18271 0.86905 0.86770 1.03760 1.84882 1.71784 1.38832 1.33694 0.91452 0.91050 0.86363 0.82275 0.82770 0.85059 0.78514 0.99933 0.99267 0.92119 0.74889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -7.89 10.28 -79.53 -0.82 -8.70 16 3 C 0.10 2.53 6.69 22.53 0.15 2.68 16 4 C -0.16 -3.06 8.74 22.42 0.20 -2.86 16 5 C -0.08 -1.49 6.19 22.26 0.14 -1.35 16 6 I -0.01 -0.20 40.25 -18.82 -0.76 -0.95 16 7 C -0.09 -1.91 9.48 22.56 0.21 -1.69 16 8 C -0.02 -0.47 5.88 -20.08 -0.12 -0.59 16 9 C 0.01 0.45 10.75 87.43 0.94 1.39 16 10 N -0.21 -8.70 9.34 -52.19 -0.49 -9.19 16 11 N -0.64 -29.47 6.63 -190.79 -1.26 -30.73 16 12 C 0.30 16.90 6.42 85.63 0.55 17.45 16 13 C -0.56 -31.07 9.28 25.60 0.24 -30.83 16 14 H 0.07 3.81 7.60 -2.91 -0.02 3.79 16 15 C 0.01 0.51 5.46 84.65 0.46 0.97 16 16 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 17 Si 0.98 42.94 29.54 68.60 2.03 44.97 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 21 C 0.09 2.80 6.73 22.85 0.15 2.96 16 22 O -0.48 -17.07 11.16 -78.97 -0.88 -17.96 16 23 H 0.07 0.74 7.67 -2.39 -0.02 0.72 16 24 H 0.07 0.71 7.65 -2.38 -0.02 0.70 16 25 H 0.12 1.15 8.14 -2.39 -0.02 1.14 16 26 H 0.16 2.25 6.27 -2.91 -0.02 2.23 16 27 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 28 H 0.13 3.56 8.02 -2.91 -0.02 3.54 16 29 H 0.38 15.63 8.28 -213.32 -1.77 13.86 16 30 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 31 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 32 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.39 12.07 9.06 -74.06 -0.67 11.40 16 Total: -1.00 -68.73 322.57 0.87 -67.86 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -1.27 Total: 20.41 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 4.04 Total: -10.59 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -1.47 Total: -95.03 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -1.70 Total: -26.66 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 53 Polarization: -0.20 SS G_CDS: -0.76 Total: -0.95 kcal Total: -68.73 0.87 -67.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002762514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.311 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds