Wall clock time and date at job start Tue Mar 31 2020 06:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48503 * 109.46881 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47153 * 299.99699 * 3 2 1 6 6 H 1.48493 * 109.47190 * 59.99775 * 3 2 1 7 7 C 1.39043 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99909 * 180.02562 * 7 2 1 9 9 N 1.36877 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00342 * 180.02562 * 9 7 2 11 11 O 1.21593 * 119.99564 * 359.97438 * 10 9 7 12 12 C 1.47763 * 120.00493 * 180.02562 * 10 9 7 13 13 C 1.39951 * 125.69371 * 179.97438 * 12 10 9 14 14 C 1.38688 * 107.57559 * 180.02562 * 13 12 10 15 15 N 1.33936 * 132.21894 * 180.32446 * 14 13 12 16 16 C 1.32002 * 120.75024 * 180.20662 * 15 14 13 17 17 C 1.48166 * 119.96508 * 179.72104 * 16 15 14 18 18 C 1.39457 * 120.13047 * 179.44477 * 17 16 15 19 19 C 1.37986 * 119.86107 * 179.78720 * 18 17 16 20 20 C 1.38346 * 120.13473 * 0.46792 * 19 18 17 21 21 C 1.38345 * 120.26788 * 359.78167 * 20 19 18 22 22 C 1.37985 * 120.13079 * 359.97438 * 21 20 19 23 23 C 1.41385 * 120.06842 * 359.43614 * 16 15 14 24 24 C 1.35152 * 119.36099 * 0.28414 * 23 16 15 25 25 C 1.50704 * 120.36411 * 180.02562 * 24 23 16 26 26 F 1.39896 * 109.47158 * 4.99644 * 25 24 23 27 27 F 1.39900 * 109.47312 * 124.99772 * 25 24 23 28 28 F 1.39904 * 109.46906 * 244.99733 * 25 24 23 29 29 N 1.36830 * 119.27302 * 359.97438 * 24 23 16 30 30 N 1.32418 * 125.69064 * 0.02562 * 12 10 9 31 31 H 0.97005 * 119.99977 * 0.02562 * 1 2 3 32 32 H 0.97007 * 120.00228 * 0.02562 * 9 7 2 33 33 H 1.08001 * 126.21615 * 0.02582 * 13 12 10 34 34 H 1.07995 * 120.07170 * 0.02562 * 18 17 16 35 35 H 1.08005 * 119.93061 * 180.22855 * 19 18 17 36 36 H 1.08002 * 119.86375 * 179.76552 * 20 19 18 37 37 H 1.07998 * 119.93472 * 180.02562 * 21 20 19 38 38 H 1.08006 * 120.06306 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.31919 * 180.29543 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7077 1.3463 -0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8889 2.3964 1.2124 7 6 2.0088 -1.2042 -0.0005 8 1 3.0888 -1.2042 -0.0001 9 7 1.3244 -2.3896 -0.0005 10 6 1.9982 -3.5568 -0.0005 11 8 3.2142 -3.5568 -0.0010 12 6 1.2594 -4.8364 -0.0011 13 6 1.8355 -6.1119 -0.0017 14 6 0.8029 -7.0378 -0.0027 15 7 0.7951 -8.3771 0.0021 16 6 -0.3433 -9.0454 -0.0044 17 6 -0.3317 -10.5270 -0.0052 18 6 -1.5323 -11.2365 -0.0003 19 6 -1.5150 -12.6162 -0.0056 20 6 -0.3099 -13.2957 -0.0058 21 6 0.8844 -12.5974 -0.0054 22 6 0.8800 -11.2176 -0.0053 23 6 -1.5736 -8.3488 -0.0044 24 6 -1.5700 -6.9973 -0.0037 25 6 -2.8682 -6.2320 -0.0031 26 9 -3.9372 -7.1272 0.1113 27 9 -2.8858 -5.3441 1.0778 28 9 -2.9869 -5.5143 -1.1982 29 7 -0.3746 -6.3315 -0.0023 30 7 -0.0582 -4.9678 -0.0021 31 1 -0.4850 0.8401 -0.0004 32 1 0.3544 -2.3896 -0.0005 33 1 2.8922 -6.3348 -0.0014 34 1 -2.4736 -10.7072 0.0036 35 1 -2.4441 -13.1668 -0.0055 36 1 -0.3014 -14.3757 -0.0061 37 1 1.8220 -13.1333 -0.0061 38 1 1.8130 -10.6735 -0.0054 39 1 -2.5074 -8.8915 -0.0049 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002807320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:34 Heat of formation + Delta-G solvation = -32.332643 kcal Electronic energy + Delta-G solvation = -32997.655377 eV Core-core repulsion = 27878.858295 eV Total energy + Delta-G solvation = -5118.797082 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.089 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.49172 -48.05515 -47.86254 -42.36427 -39.78522 -38.52512 -37.36897 -34.84513 -34.17753 -32.64716 -31.48648 -31.36822 -30.36323 -28.98138 -27.46995 -25.85893 -24.51053 -23.92944 -22.77184 -21.90593 -21.59528 -19.54455 -19.23732 -18.81865 -18.59946 -18.22351 -17.80457 -17.38950 -17.09719 -16.16131 -15.77991 -15.34158 -15.05757 -14.81395 -14.74964 -14.72962 -14.60573 -14.32784 -14.14685 -14.02297 -14.01234 -13.93860 -13.90190 -13.75554 -13.39600 -13.32713 -12.84022 -12.68703 -12.37477 -11.81343 -11.75993 -11.55698 -11.52945 -11.22306 -11.14873 -10.49020 -10.41368 -10.12647 -9.92021 -9.68964 -9.34893 -8.98751 -8.82227 -8.22243 -7.95400 -6.68423 -4.00260 -0.25347 0.30108 1.01521 1.23923 1.61159 2.06522 2.14780 3.01123 3.10406 3.12434 3.16789 3.23739 3.28711 3.54916 3.57223 3.97384 3.97910 4.07131 4.16489 4.26953 4.44490 4.54001 4.61871 4.63996 4.74907 4.90154 5.03928 5.15559 5.17980 5.24222 5.36432 5.52547 5.65261 5.85028 5.99102 6.04862 6.08916 6.12881 6.26816 6.52258 6.54332 7.28547 7.31309 7.34153 7.82340 8.35974 8.90521 9.26844 9.80784 10.46601 Molecular weight = 376.09amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.002419 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.280786 B =11572.807485 C =13413.588532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.027 3.973 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.293 4.293 8 H 0.115 0.885 9 N -0.515 5.515 10 C 0.486 3.514 11 O -0.582 6.582 12 C 0.113 3.887 13 C -0.184 4.184 14 C 0.242 3.758 15 N -0.425 5.425 16 C 0.232 3.768 17 C -0.056 4.056 18 C -0.090 4.090 19 C -0.124 4.124 20 C -0.101 4.101 21 C -0.126 4.126 22 C -0.068 4.068 23 C -0.163 4.163 24 C 0.103 3.897 25 C 0.523 3.477 26 F -0.164 7.164 27 F -0.153 7.153 28 F -0.156 7.156 29 N -0.305 5.305 30 N -0.274 5.274 31 H 0.279 0.721 32 H 0.402 0.598 33 H 0.176 0.824 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.749 -24.531 -0.008 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.179 4.179 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.424 4.424 8 H 0.132 0.868 9 N -0.148 5.148 10 C 0.270 3.730 11 O -0.467 6.467 12 C -0.047 4.047 13 C -0.215 4.215 14 C 0.019 3.981 15 N -0.135 5.135 16 C 0.067 3.933 17 C -0.057 4.057 18 C -0.110 4.110 19 C -0.142 4.142 20 C -0.120 4.120 21 C -0.144 4.144 22 C -0.088 4.088 23 C -0.188 4.188 24 C -0.014 4.014 25 C 0.467 3.533 26 F -0.145 7.145 27 F -0.134 7.134 28 F -0.137 7.137 29 N -0.079 5.079 30 N -0.103 5.103 31 H 0.089 0.911 32 H 0.237 0.763 33 H 0.194 0.806 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -8.191 -23.735 0.001 25.109 hybrid contribution -0.647 0.855 -0.003 1.072 sum -8.838 -22.880 -0.002 24.528 Atomic orbital electron populations 1.69644 1.06318 1.29166 1.45837 1.25539 0.95745 1.00508 0.96152 0.85644 0.79851 0.79958 0.78051 1.18670 1.20304 1.20301 1.20016 0.94010 0.81733 1.46634 0.86769 1.41946 1.10173 1.04441 1.58263 1.16292 0.86511 0.80886 0.89264 1.90654 1.11945 1.85292 1.58795 1.22920 0.89717 0.96859 0.95155 1.21102 0.99029 0.87774 1.13619 1.20356 0.86025 0.87521 1.04210 1.68049 1.28289 1.04044 1.13167 1.20010 0.86981 0.93635 0.92638 1.18260 0.94546 0.88080 1.04778 1.21258 0.96986 0.94492 0.98281 1.21080 0.98459 0.93773 1.00923 1.21376 0.92543 1.00272 0.97763 1.21202 0.98580 0.93956 1.00618 1.21429 0.97989 0.94153 0.95212 1.21550 1.02080 0.90645 1.04540 1.20207 0.85249 0.91882 1.04101 1.17597 0.82437 0.77678 0.75565 1.93210 1.57642 1.67780 1.95877 1.93332 1.96482 1.68944 1.54642 1.93319 1.96126 1.78554 1.45679 1.46916 1.04312 1.08132 1.48539 1.78490 1.15485 0.86620 1.29732 0.91054 0.76274 0.80648 0.85217 0.85301 0.85652 0.85326 0.84258 0.80510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.28 13.05 55.50 0.72 -22.56 16 2 C 0.03 0.69 5.50 -17.45 -0.10 0.59 16 3 Si 0.94 20.14 29.55 -169.99 -5.02 15.11 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.29 -8.05 9.68 -15.00 -0.15 -8.19 16 8 H 0.11 3.20 7.15 -52.49 -0.38 2.83 16 9 N -0.52 -13.68 5.28 -11.86 -0.06 -13.75 16 10 C 0.49 12.41 7.78 -12.37 -0.10 12.31 16 11 O -0.58 -16.17 16.45 5.28 0.09 -16.09 16 12 C 0.11 2.49 7.05 -83.08 -0.59 1.91 16 13 C -0.18 -3.55 10.66 -38.77 -0.41 -3.96 16 14 C 0.24 4.24 7.90 -155.48 -1.23 3.01 16 15 N -0.43 -6.28 9.57 -8.81 -0.08 -6.37 16 16 C 0.23 2.76 6.77 -82.52 -0.56 2.20 16 17 C -0.06 -0.52 5.88 -104.91 -0.62 -1.14 16 18 C -0.09 -0.63 9.43 -39.22 -0.37 -1.00 16 19 C -0.12 -0.72 10.03 -39.63 -0.40 -1.12 16 20 C -0.10 -0.59 10.04 -39.50 -0.40 -0.98 16 21 C -0.13 -0.87 10.03 -39.63 -0.40 -1.26 16 22 C -0.07 -0.61 9.58 -39.22 -0.38 -0.99 16 23 C -0.16 -1.76 8.79 -39.48 -0.35 -2.11 16 24 C 0.10 1.46 6.29 -81.46 -0.51 0.95 16 25 C 0.52 7.06 3.39 36.01 0.12 7.19 16 26 F -0.16 -1.69 16.00 2.25 0.04 -1.65 16 27 F -0.15 -2.38 17.30 2.25 0.04 -2.34 16 28 F -0.16 -2.34 17.30 2.25 0.04 -2.30 16 29 N -0.30 -5.43 3.90 -8.52 -0.03 -5.46 16 30 N -0.27 -5.73 12.20 33.22 0.41 -5.33 16 31 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.40 10.61 7.58 -40.82 -0.31 10.30 16 33 H 0.18 3.13 8.06 -52.49 -0.42 2.70 16 34 H 0.13 0.61 6.21 -52.49 -0.33 0.28 16 35 H 0.13 0.45 8.06 -52.48 -0.42 0.02 16 36 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 37 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.14 1.32 7.55 -52.48 -0.40 0.92 16 39 H 0.18 1.19 5.35 -52.49 -0.28 0.91 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -31.79 365.10 -7.30 -39.09 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -2.51 Total: 8.72 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -6.41 Total: 7.40 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.95 Total: -53.46 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.09 Total: -16.09 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.11 Total: -6.29 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.79 -7.30 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002807320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.762 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds