Wall clock time and date at job start Tue Mar 31 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48503 * 109.46881 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47153 * 299.99699 * 3 2 1 6 6 H 1.48493 * 109.47190 * 59.99775 * 3 2 1 7 7 C 1.39043 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99909 * 180.02562 * 7 2 1 9 9 N 1.36877 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00342 * 180.02562 * 9 7 2 11 11 O 1.21593 * 119.99564 * 359.97438 * 10 9 7 12 12 C 1.47763 * 120.00493 * 180.02562 * 10 9 7 13 13 C 1.39951 * 125.69371 * 179.97438 * 12 10 9 14 14 C 1.38688 * 107.57559 * 180.02562 * 13 12 10 15 15 N 1.33936 * 132.21894 * 180.32446 * 14 13 12 16 16 C 1.32002 * 120.75024 * 180.20662 * 15 14 13 17 17 C 1.48166 * 119.96508 * 179.72104 * 16 15 14 18 18 C 1.39457 * 120.13047 * 179.44477 * 17 16 15 19 19 C 1.37986 * 119.86107 * 179.78720 * 18 17 16 20 20 C 1.38346 * 120.13473 * 0.46792 * 19 18 17 21 21 C 1.38345 * 120.26788 * 359.78167 * 20 19 18 22 22 C 1.37985 * 120.13079 * 359.97438 * 21 20 19 23 23 C 1.41385 * 120.06842 * 359.43614 * 16 15 14 24 24 C 1.35152 * 119.36099 * 0.28414 * 23 16 15 25 25 C 1.50704 * 120.36411 * 180.02562 * 24 23 16 26 26 F 1.39896 * 109.47158 * 4.99644 * 25 24 23 27 27 F 1.39900 * 109.47312 * 124.99772 * 25 24 23 28 28 F 1.39904 * 109.46906 * 244.99733 * 25 24 23 29 29 N 1.36830 * 119.27302 * 359.97438 * 24 23 16 30 30 N 1.32418 * 125.69064 * 0.02562 * 12 10 9 31 31 H 0.97005 * 119.99977 * 0.02562 * 1 2 3 32 32 H 0.97007 * 120.00228 * 0.02562 * 9 7 2 33 33 H 1.08001 * 126.21615 * 0.02582 * 13 12 10 34 34 H 1.07995 * 120.07170 * 0.02562 * 18 17 16 35 35 H 1.08005 * 119.93061 * 180.22855 * 19 18 17 36 36 H 1.08002 * 119.86375 * 179.76552 * 20 19 18 37 37 H 1.07998 * 119.93472 * 180.02562 * 21 20 19 38 38 H 1.08006 * 120.06306 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.31919 * 180.29543 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7077 1.3463 -0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8889 2.3964 1.2124 7 6 2.0088 -1.2042 -0.0005 8 1 3.0888 -1.2042 -0.0001 9 7 1.3244 -2.3896 -0.0005 10 6 1.9982 -3.5568 -0.0005 11 8 3.2142 -3.5568 -0.0010 12 6 1.2594 -4.8364 -0.0011 13 6 1.8355 -6.1119 -0.0017 14 6 0.8029 -7.0378 -0.0027 15 7 0.7951 -8.3771 0.0021 16 6 -0.3433 -9.0454 -0.0044 17 6 -0.3317 -10.5270 -0.0052 18 6 -1.5323 -11.2365 -0.0003 19 6 -1.5150 -12.6162 -0.0056 20 6 -0.3099 -13.2957 -0.0058 21 6 0.8844 -12.5974 -0.0054 22 6 0.8800 -11.2176 -0.0053 23 6 -1.5736 -8.3488 -0.0044 24 6 -1.5700 -6.9973 -0.0037 25 6 -2.8682 -6.2320 -0.0031 26 9 -3.9372 -7.1272 0.1113 27 9 -2.8858 -5.3441 1.0778 28 9 -2.9869 -5.5143 -1.1982 29 7 -0.3746 -6.3315 -0.0023 30 7 -0.0582 -4.9678 -0.0021 31 1 -0.4850 0.8401 -0.0004 32 1 0.3544 -2.3896 -0.0005 33 1 2.8922 -6.3348 -0.0014 34 1 -2.4736 -10.7072 0.0036 35 1 -2.4441 -13.1668 -0.0055 36 1 -0.3014 -14.3757 -0.0061 37 1 1.8220 -13.1333 -0.0061 38 1 1.8130 -10.6735 -0.0054 39 1 -2.5074 -8.8915 -0.0049 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002807320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:33 Heat of formation + Delta-G solvation = -51.572269 kcal Electronic energy + Delta-G solvation = -32998.489670 eV Core-core repulsion = 27878.858295 eV Total energy + Delta-G solvation = -5119.631375 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.089 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -51.57236 -49.07866 -49.02698 -43.69708 -40.76570 -40.03613 -38.73488 -36.27248 -35.97798 -33.83455 -33.29820 -31.95472 -31.50541 -30.22582 -28.56162 -27.72398 -25.47115 -25.45930 -23.65467 -23.00107 -22.51437 -21.24553 -20.44522 -20.11875 -19.93363 -19.69029 -18.94252 -18.82557 -17.87605 -17.50983 -17.08291 -16.73010 -16.29022 -16.04648 -15.85602 -15.81366 -15.62957 -15.61789 -15.44960 -15.40860 -15.31309 -15.14859 -15.08004 -14.75658 -14.52586 -14.33206 -14.24139 -13.76538 -13.64976 -13.31171 -13.03425 -12.78778 -12.74430 -12.53118 -12.26306 -12.10531 -11.98819 -11.69435 -11.32084 -11.08030 -10.90101 -10.25372 -9.88142 -9.86693 -9.24581 -8.64778 -6.11438 -1.32836 -0.81105 0.33910 0.37540 0.50467 0.63608 0.88563 1.40396 1.41904 1.57071 1.91739 2.01180 2.10561 2.26056 2.27500 2.40179 2.84601 2.86014 2.93917 3.00972 3.13394 3.30720 3.42824 3.56348 3.91083 4.03663 4.10725 4.20716 4.27215 4.37269 4.49586 4.56953 4.60617 4.91833 4.96689 5.00465 5.16646 5.26493 5.47266 5.52541 5.60817 5.69852 5.87831 6.01406 6.17803 6.34998 6.87458 7.24818 7.77940 8.51898 Molecular weight = 376.09amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.002419 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.280786 B =11572.807485 C =13413.588532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.009 4.009 3 Si 1.010 2.990 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.337 4.337 8 H 0.097 0.903 9 N -0.527 5.527 10 C 0.490 3.510 11 O -0.612 6.612 12 C 0.092 3.908 13 C -0.209 4.209 14 C 0.260 3.740 15 N -0.447 5.447 16 C 0.250 3.750 17 C -0.086 4.086 18 C -0.082 4.082 19 C -0.124 4.124 20 C -0.090 4.090 21 C -0.134 4.134 22 C -0.082 4.082 23 C -0.119 4.119 24 C 0.071 3.929 25 C 0.529 3.471 26 F -0.138 7.138 27 F -0.168 7.168 28 F -0.167 7.167 29 N -0.307 5.307 30 N -0.298 5.298 31 H 0.286 0.714 32 H 0.400 0.600 33 H 0.179 0.821 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.392 -28.733 -0.008 30.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.211 4.211 3 Si 0.831 3.169 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.467 4.467 8 H 0.115 0.885 9 N -0.160 5.160 10 C 0.276 3.724 11 O -0.499 6.499 12 C -0.067 4.067 13 C -0.240 4.240 14 C 0.034 3.966 15 N -0.158 5.158 16 C 0.087 3.913 17 C -0.087 4.087 18 C -0.101 4.101 19 C -0.142 4.142 20 C -0.108 4.108 21 C -0.152 4.152 22 C -0.102 4.102 23 C -0.143 4.143 24 C -0.044 4.044 25 C 0.473 3.527 26 F -0.119 7.119 27 F -0.149 7.149 28 F -0.148 7.148 29 N -0.082 5.082 30 N -0.128 5.128 31 H 0.096 0.904 32 H 0.234 0.766 33 H 0.196 0.804 34 H 0.176 0.824 35 H 0.179 0.821 36 H 0.171 0.829 37 H 0.162 0.838 38 H 0.141 0.859 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -10.887 -27.946 0.001 29.992 hybrid contribution -0.053 1.424 -0.003 1.425 sum -10.940 -26.523 -0.002 28.690 Atomic orbital electron populations 1.69712 1.07525 1.30411 1.46430 1.26451 0.96618 1.03351 0.94726 0.84642 0.78216 0.75376 0.78688 1.18851 1.19085 1.19076 1.20041 0.93562 0.82986 1.50089 0.88483 1.41948 1.09879 1.04718 1.59452 1.16745 0.86418 0.81861 0.87426 1.90594 1.13414 1.86371 1.59492 1.22269 0.90533 0.95977 0.97890 1.21053 0.99781 0.87316 1.15864 1.20353 0.85408 0.88439 1.02414 1.68188 1.29783 1.02253 1.15550 1.20729 0.86474 0.95189 0.88872 1.18306 0.96024 0.86209 1.08137 1.21601 0.96805 0.95253 0.96473 1.21511 0.99754 0.93421 0.99502 1.21821 0.92059 1.01850 0.95093 1.21435 1.00152 0.93113 1.00475 1.21473 0.97515 0.95307 0.95920 1.22249 1.03754 0.89190 0.99121 1.20702 0.84443 0.92952 1.06267 1.17470 0.82844 0.77588 0.74758 1.93257 1.56290 1.66641 1.95703 1.93305 1.96589 1.69674 1.55358 1.93299 1.96207 1.78991 1.46331 1.46940 1.05753 1.07125 1.48334 1.78325 1.14730 0.88853 1.30896 0.90376 0.76579 0.80415 0.82422 0.82124 0.82868 0.83839 0.85875 0.75381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.97 13.05 21.68 0.28 -49.68 16 2 C -0.01 -0.47 5.50 84.96 0.47 0.00 16 3 Si 1.01 42.43 29.55 68.60 2.03 44.46 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 7 C -0.34 -19.71 9.68 84.10 0.81 -18.90 16 8 H 0.10 5.85 7.15 -2.91 -0.02 5.83 16 9 N -0.53 -30.12 5.28 -309.70 -1.63 -31.75 16 10 C 0.49 27.02 7.78 86.76 0.67 27.69 16 11 O -0.61 -36.55 16.45 -4.01 -0.07 -36.62 16 12 C 0.09 4.33 7.05 41.99 0.30 4.63 16 13 C -0.21 -8.57 10.66 22.79 0.24 -8.33 16 14 C 0.26 9.28 7.90 133.06 1.05 10.33 16 15 N -0.45 -12.92 9.57 -181.77 -1.74 -14.66 16 16 C 0.25 5.29 6.77 42.53 0.29 5.58 16 17 C -0.09 -1.31 5.88 -20.05 -0.12 -1.43 16 18 C -0.08 -0.68 9.43 22.50 0.21 -0.47 16 19 C -0.12 -0.70 10.03 22.24 0.22 -0.48 16 20 C -0.09 -0.59 10.04 22.32 0.22 -0.37 16 21 C -0.13 -1.40 10.03 22.24 0.22 -1.18 16 22 C -0.08 -1.30 9.58 22.50 0.22 -1.09 16 23 C -0.12 -2.12 8.79 22.33 0.20 -1.93 16 24 C 0.07 1.90 6.29 41.07 0.26 2.16 16 25 C 0.53 13.48 3.39 71.24 0.24 13.72 16 26 F -0.14 -2.34 16.00 44.97 0.72 -1.62 16 27 F -0.17 -5.18 17.30 44.97 0.78 -4.40 16 28 F -0.17 -4.93 17.30 44.97 0.78 -4.16 16 29 N -0.31 -11.06 3.90 -180.86 -0.71 -11.76 16 30 N -0.30 -13.15 12.20 -48.82 -0.60 -13.74 16 31 H 0.29 14.51 8.31 -92.70 -0.77 13.74 16 32 H 0.40 22.71 7.58 -92.70 -0.70 22.01 16 33 H 0.18 6.89 8.06 -2.91 -0.02 6.87 16 34 H 0.16 0.33 6.21 -2.91 -0.02 0.31 16 35 H 0.16 -0.04 8.06 -2.91 -0.02 -0.06 16 36 H 0.15 0.19 8.06 -2.91 -0.02 0.17 16 37 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.12 2.29 7.55 -2.91 -0.02 2.27 16 39 H 0.23 1.57 5.35 -2.91 -0.02 1.56 16 Total: -1.00 -76.32 365.10 5.83 -70.49 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.48 Total: 23.51 kcal Atomic # 6 Polarization: 24.43 SS G_CDS: 5.51 Total: 29.94 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -4.39 Total: -121.60 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.07 Total: -36.62 kcal Atomic # 9 Polarization: -12.45 SS G_CDS: 2.28 Total: -10.18 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -76.32 5.83 -70.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002807320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.918 kcal (2) G-P(sol) polarization free energy of solvation -76.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds