Wall clock time and date at job start Tue Mar 31 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.66583 * 2 1 4 4 C 1.53181 * 109.56844 * 120.29640 * 2 1 3 5 5 C 1.52915 * 109.06198 * 190.25829 * 4 2 1 6 6 C 1.52360 * 108.95059 * 308.98460 * 5 4 2 7 7 C 1.33803 * 123.15920 * 17.43281 * 6 5 4 8 8 S 1.75849 * 111.49898 * 179.97438 * 7 6 5 9 9 C 1.74467 * 92.40075 * 0.04708 * 8 7 6 10 10 N 1.33986 * 129.39035 * 179.97438 * 9 8 7 11 11 C 1.32129 * 117.36312 * 179.97438 * 10 9 8 12 12 N 1.31826 * 124.01814 * 0.02562 * 11 10 9 13 13 C 1.33088 * 122.99231 * 0.02562 * 12 11 10 14 14 O 1.35454 * 122.18765 * 180.02562 * 13 12 11 15 15 C 1.42902 * 116.99755 * 0.02562 * 14 13 12 16 16 C 1.50700 * 109.47015 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00157 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00217 * 180.02562 * 16 15 14 19 19 C 1.46507 * 119.99820 * 359.97438 * 18 16 15 20 20 C 1.46498 * 120.00233 * 180.02562 * 18 16 15 21 21 C 1.50706 * 109.47132 * 90.00201 * 20 18 16 22 22 H 1.08000 * 119.99844 * 359.97438 * 21 20 18 23 23 C 1.37875 * 119.99531 * 180.02562 * 21 20 18 24 24 N 1.31508 * 120.00718 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99686 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47373 * 89.99393 * 25 23 21 27 27 H 1.48498 * 109.47226 * 209.99754 * 25 23 21 28 28 H 1.48507 * 109.47026 * 329.99638 * 25 23 21 29 29 C 1.40241 * 109.66951 * 359.93469 * 9 8 7 30 30 C 1.51801 * 124.33653 * 359.69901 * 7 6 5 31 31 H 1.09002 * 109.46931 * 299.70375 * 1 2 3 32 32 H 1.08995 * 109.47024 * 59.69974 * 1 2 3 33 33 H 1.08992 * 109.47044 * 179.70043 * 1 2 3 34 34 H 1.09004 * 109.53860 * 70.38177 * 4 2 1 35 35 H 1.09000 * 109.54222 * 310.13226 * 4 2 1 36 36 H 1.08996 * 109.56189 * 189.14576 * 5 4 2 37 37 H 1.08998 * 109.64664 * 68.87733 * 5 4 2 38 38 H 1.07995 * 117.99549 * 179.97438 * 11 10 9 39 39 H 1.08995 * 109.46950 * 299.99772 * 15 14 13 40 40 H 1.08994 * 109.47139 * 59.99910 * 15 14 13 41 41 H 1.09008 * 109.46824 * 90.00265 * 19 18 16 42 42 H 1.08997 * 109.46940 * 209.99874 * 19 18 16 43 43 H 1.08997 * 109.46845 * 330.00498 * 19 18 16 44 44 H 1.09006 * 109.46990 * 209.99923 * 20 18 16 45 45 H 1.08997 * 109.47379 * 329.99758 * 20 18 16 46 46 H 0.96998 * 120.00302 * 180.02562 * 24 23 21 47 47 H 1.09001 * 109.55663 * 136.67987 * 30 7 6 48 48 H 1.08998 * 109.56355 * 257.00464 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0431 -0.7281 1.2462 5 6 3.5504 -0.5030 1.3711 6 6 4.2136 -0.8461 0.0430 7 6 3.5391 -0.9424 -1.1086 8 16 4.6040 -1.3512 -2.4469 9 6 6.0082 -1.3943 -1.4125 10 7 7.2852 -1.6557 -1.7228 11 6 8.1679 -1.6232 -0.7401 12 7 7.8657 -1.3517 0.5140 13 6 6.6271 -1.0808 0.9187 14 8 6.3349 -0.8035 2.2119 15 6 7.4225 -0.8121 3.1389 16 6 6.9101 -0.4836 4.5175 17 8 5.7297 -0.2642 4.6894 18 7 7.7634 -0.4337 5.5594 19 6 9.1892 -0.6994 5.3519 20 6 7.2652 -0.1149 6.8997 21 6 6.8740 -1.3874 7.6061 22 1 6.9849 -2.3384 7.1064 23 6 6.3734 -1.3373 8.8898 24 7 6.2378 -0.1792 9.4980 25 14 5.8878 -2.9145 9.7651 26 1 7.0575 -3.4488 10.5077 27 1 4.7837 -2.6324 10.7172 28 1 5.4362 -3.9161 8.7660 29 6 5.6326 -1.0986 -0.0941 30 6 2.0418 -0.7322 -1.2440 31 1 -0.3633 0.5092 0.8927 32 1 -0.3633 0.5185 -0.8872 33 1 -0.3633 -1.0276 -0.0054 34 1 1.8402 -1.7952 1.1544 35 1 1.5414 -0.3352 2.1305 36 1 3.9515 -1.1446 2.1556 37 1 3.7459 0.5406 1.6177 38 1 9.2001 -1.8327 -0.9787 39 1 7.8840 -1.7995 3.1482 40 1 8.1610 -0.0686 2.8395 41 1 9.7029 0.2341 5.1215 42 1 9.6133 -1.1336 6.2572 43 1 9.3120 -1.3960 4.5227 44 1 8.0469 0.3901 7.4673 45 1 6.3959 0.5376 6.8185 46 1 5.8860 -0.1441 10.4013 47 1 1.8364 -0.1315 -2.1300 48 1 1.5443 -1.6980 -1.3326 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003247787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:56 Heat of formation + Delta-G solvation = -20.078012 kcal Electronic energy + Delta-G solvation = -31726.001307 eV Core-core repulsion = 27486.295323 eV Total energy + Delta-G solvation = -4239.705984 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.37701 -39.51868 -38.86799 -38.06649 -35.06077 -34.94046 -33.22831 -32.70030 -31.14462 -30.65220 -29.26899 -27.42920 -26.80145 -25.83860 -24.96724 -23.86652 -22.98565 -22.65763 -21.30516 -19.52080 -19.04108 -18.77643 -17.87424 -16.85148 -16.82704 -16.46487 -16.39819 -15.74245 -15.60795 -15.16206 -15.05956 -14.59695 -14.40903 -14.27537 -14.08595 -13.83263 -13.55206 -13.51036 -13.17062 -12.87750 -12.60774 -12.51382 -12.31114 -12.25029 -12.02111 -11.93508 -11.71674 -11.69629 -11.35681 -11.29845 -11.26885 -10.94910 -10.85370 -10.64595 -10.58635 -10.43887 -10.21920 -10.13175 -9.70635 -9.69106 -9.09191 -8.95236 -8.49397 -8.10014 -7.80057 -6.10366 -4.15599 0.20875 0.70660 0.90059 1.56437 1.89426 2.39825 3.16812 3.26817 3.33871 3.38498 3.43034 3.66141 3.90166 4.13806 4.22079 4.37098 4.40090 4.55888 4.58781 4.66998 4.86025 4.95405 5.04582 5.13828 5.16584 5.17198 5.24592 5.30859 5.34544 5.39987 5.48272 5.55380 5.63321 5.69972 5.76256 5.82273 5.82787 5.92179 6.03103 6.07735 6.11755 6.22306 6.37321 6.43637 6.78180 6.97894 7.32693 7.40556 7.74420 7.85188 8.14605 8.21005 8.77037 8.92403 9.49701 10.97800 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009749 B = 0.002546 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.380324 B =10994.574191 C =13160.822272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.060 4.060 6 C -0.044 4.044 7 C -0.191 4.191 8 S 0.169 5.831 9 C 0.095 3.905 10 N -0.495 5.495 11 C 0.343 3.657 12 N -0.589 5.589 13 C 0.427 3.573 14 O -0.253 6.253 15 C 0.047 3.953 16 C 0.506 3.494 17 O -0.519 6.519 18 N -0.595 5.595 19 C 0.078 3.922 20 C 0.247 3.753 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.284 1.284 28 H -0.274 1.274 29 C -0.189 4.189 30 C -0.038 4.038 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.202 0.798 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.036 0.964 45 H 0.046 0.954 46 H 0.264 0.736 47 H 0.078 0.922 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.413 -0.559 -24.053 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.099 4.099 6 C -0.056 4.056 7 C -0.306 4.306 8 S 0.431 5.569 9 C -0.155 4.155 10 N -0.218 5.218 11 C 0.051 3.949 12 N -0.323 5.323 13 C 0.234 3.766 14 O -0.153 6.153 15 C -0.032 4.032 16 C 0.290 3.710 17 O -0.395 6.395 18 N -0.329 5.329 19 C -0.066 4.066 20 C 0.128 3.872 21 C -0.568 4.568 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.532 5.532 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.204 4.204 30 C -0.077 4.077 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.219 0.781 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.723 -0.713 -25.456 25.611 hybrid contribution -0.099 -0.602 2.270 2.351 sum -2.822 -1.315 -23.186 23.394 Atomic orbital electron populations 1.21821 0.94497 1.02047 1.02011 1.21220 0.95692 0.99899 0.94133 0.90460 1.21652 0.94938 1.00861 0.97818 1.20652 0.94120 1.03194 0.91906 1.20224 0.89578 0.99320 0.96434 1.24585 1.00152 1.10589 0.95276 1.83912 0.92497 1.72529 1.07912 1.23747 0.98188 0.99186 0.94419 1.69840 0.98517 1.19871 1.33532 1.24769 0.99724 0.88426 0.82004 1.67664 1.20465 1.22415 1.21718 1.20126 0.87654 0.84085 0.84735 1.86375 1.35336 1.81228 1.12391 1.22769 0.88275 1.04412 0.87731 1.19669 0.86999 0.79577 0.84766 1.90722 1.15694 1.48553 1.84513 1.48084 1.07006 1.68061 1.09767 1.21747 0.82311 0.99988 1.02583 1.19367 0.95819 0.96925 0.75050 1.21411 1.43255 0.93116 0.99055 0.92394 1.24927 0.95315 0.96499 0.97262 1.69922 1.45580 1.24076 1.13668 0.86487 0.78238 0.83266 0.79389 1.20591 1.21013 1.19859 1.19638 0.94731 1.13193 0.92798 1.20457 0.86841 1.01354 0.99080 0.92104 0.92637 0.92485 0.91550 0.90572 0.88826 0.89708 0.78144 0.88411 0.88548 0.93259 0.90212 0.92372 0.94572 0.93606 0.92613 0.90340 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.18 37.16 0.34 -0.67 16 2 C -0.09 -0.76 2.73 -90.44 -0.25 -1.00 16 3 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 4 C -0.12 -1.20 5.21 -26.68 -0.14 -1.34 16 5 C -0.06 -0.77 5.32 -27.10 -0.14 -0.92 16 6 C -0.04 -0.57 5.93 -102.77 -0.61 -1.18 16 7 C -0.19 -2.05 6.30 -35.32 -0.22 -2.28 16 8 S 0.17 1.78 23.16 -107.50 -2.49 -0.71 16 9 C 0.09 1.25 7.49 -15.86 -0.12 1.13 16 10 N -0.50 -6.32 10.75 -13.37 -0.14 -6.47 16 11 C 0.34 3.88 12.14 -91.84 -1.12 2.77 16 12 N -0.59 -7.74 9.42 -13.84 -0.13 -7.87 16 13 C 0.43 6.31 7.71 -15.59 -0.12 6.19 16 14 O -0.25 -4.12 7.86 -37.96 -0.30 -4.42 16 15 C 0.05 0.71 4.44 36.01 0.16 0.87 16 16 C 0.51 10.25 7.75 -10.99 -0.09 10.17 16 17 O -0.52 -12.77 16.08 -14.36 -0.23 -13.00 16 18 N -0.60 -12.14 2.86 -182.94 -0.52 -12.66 16 19 C 0.08 1.15 10.24 59.85 0.61 1.76 16 20 C 0.25 6.27 5.16 -5.19 -0.03 6.24 16 21 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 22 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 25 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 28 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 29 C -0.19 -2.68 6.00 -105.14 -0.63 -3.31 16 30 C -0.04 -0.31 5.53 -27.26 -0.15 -0.46 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 36 H 0.09 1.44 7.18 -51.93 -0.37 1.06 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.10 1.34 7.40 -51.93 -0.38 0.96 16 40 H 0.10 1.26 8.11 -51.93 -0.42 0.84 16 41 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 42 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 43 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 44 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 45 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 LS Contribution 408.41 15.07 6.15 6.15 Total: -1.00 -33.50 408.41 -11.79 -45.29 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.93 Total: -2.09 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -2.92 Total: 4.62 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.06 Total: -52.35 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.53 Total: -17.42 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.49 Total: -0.71 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.50 -11.79 -45.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003247787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.208 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds