Wall clock time and date at job start Tue Mar 31 2020 05:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35953 * 116.99724 * 2 1 4 4 C 1.38073 * 120.00435 * 0.02562 * 3 2 1 5 5 C 1.39978 * 119.83939 * 179.97438 * 4 3 2 6 6 C 1.46958 * 120.07647 * 180.02562 * 5 4 3 7 7 C 1.35048 * 119.99804 * 179.97438 * 6 5 4 8 8 C 1.46224 * 119.99971 * 180.02562 * 7 6 5 9 9 O 1.21739 * 119.99517 * 359.97438 * 8 7 6 10 10 N 1.34768 * 119.99886 * 180.02562 * 8 7 6 11 11 C 1.39919 * 120.00263 * 185.24480 * 10 8 7 12 12 C 1.38890 * 120.04079 * 213.34135 * 11 10 8 13 13 C 1.38133 * 119.99575 * 179.80930 * 12 11 10 14 14 C 1.38426 * 120.06948 * 0.44244 * 13 12 11 15 15 F 1.35101 * 119.96116 * 179.76668 * 14 13 12 16 16 C 1.38676 * 120.07583 * 359.79076 * 14 13 12 17 17 F 1.35105 * 119.99518 * 179.97438 * 16 14 13 18 18 C 1.38309 * 120.00569 * 359.97438 * 16 14 13 19 19 C 1.40038 * 119.84539 * 359.97438 * 5 4 3 20 20 C 1.37650 * 119.99513 * 0.02562 * 19 5 4 21 21 C 1.39060 * 120.16097 * 0.25391 * 20 19 5 22 22 O 1.35617 * 119.91878 * 179.71961 * 21 20 19 23 23 C 1.34760 * 116.99659 * 353.90965 * 22 21 20 24 24 H 1.08001 * 120.00539 * 354.59402 * 23 22 21 25 25 C 1.38707 * 120.00094 * 174.59574 * 23 22 21 26 26 N 1.31522 * 119.99764 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00472 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47315 * 89.99916 * 27 25 23 29 29 H 1.48501 * 109.47292 * 209.99834 * 27 25 23 30 30 H 1.48500 * 109.46914 * 329.99889 * 27 25 23 31 31 H 1.08995 * 109.47131 * 60.00021 * 1 2 3 32 32 H 1.09001 * 109.46537 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47003 * 299.99625 * 1 2 3 34 34 H 1.07998 * 120.07731 * 359.97438 * 4 3 2 35 35 H 1.07996 * 120.00382 * 359.97438 * 6 5 4 36 36 H 1.07995 * 120.00327 * 0.02562 * 7 6 5 37 37 H 0.97006 * 120.00391 * 5.24606 * 10 8 7 38 38 H 1.08002 * 120.00489 * 0.02562 * 12 11 10 39 39 H 1.07997 * 119.95804 * 180.20980 * 13 12 11 40 40 H 1.08003 * 120.03409 * 179.97438 * 18 16 14 41 41 H 1.07995 * 119.99875 * 180.02562 * 19 5 4 42 42 H 1.08000 * 119.91583 * 179.97438 * 20 19 5 43 43 H 0.97006 * 120.00186 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0005 5 6 1.9332 3.6148 0.0011 6 6 1.1380 4.8506 0.0022 7 6 1.7562 6.0513 0.0033 8 6 0.9649 7.2810 0.0050 9 8 -0.2511 7.2222 0.0050 10 7 1.5818 8.4792 0.0055 11 6 0.8294 9.6534 0.1179 12 6 1.2440 10.8097 -0.5304 13 6 0.4983 11.9674 -0.4221 14 6 -0.6574 11.9792 0.3397 15 9 -1.3825 13.1140 0.4480 16 6 -1.0715 10.8278 0.9922 17 9 -2.1995 10.8413 1.7357 18 6 -0.3299 9.6655 0.8819 19 6 3.3321 3.6803 0.0016 20 6 4.0753 2.5217 0.0011 21 6 3.4405 1.2845 -0.0053 22 8 4.1776 0.1461 -0.0116 23 6 5.5122 0.2822 -0.1386 24 1 5.9412 1.2572 -0.3171 25 6 6.3353 -0.8300 -0.0402 26 7 5.8131 -2.0173 0.1776 27 14 8.1854 -0.6414 -0.2156 28 1 8.7858 -0.3877 1.1188 29 1 8.7580 -1.8865 -0.7874 30 1 8.4833 0.5001 -1.1175 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2157 2.3143 0.0005 35 1 0.0593 4.7986 0.0022 36 1 2.8348 6.1034 0.0028 37 1 2.5475 8.5276 -0.0721 38 1 2.1475 10.8027 -1.1221 39 1 0.8195 12.8652 -0.9292 40 1 -0.6518 8.7686 1.3902 41 1 3.8277 4.6399 0.0025 42 1 5.1540 2.5738 0.0011 43 1 6.3886 -2.7952 0.2460 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003284094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:33 Heat of formation + Delta-G solvation = -111.150154 kcal Electronic energy + Delta-G solvation = -31285.629369 eV Core-core repulsion = 26320.007968 eV Total energy + Delta-G solvation = -4965.621401 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.111 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.71495 -48.78870 -40.75938 -39.79824 -38.58167 -37.76672 -36.67339 -34.89091 -33.21688 -32.38161 -31.23590 -29.99177 -29.71209 -28.55529 -26.65766 -25.68266 -24.41155 -23.65178 -22.59833 -21.86327 -21.10311 -19.63224 -18.55829 -18.31808 -17.99871 -17.91531 -17.49990 -16.81962 -16.51223 -16.34735 -15.91751 -15.48604 -15.27686 -15.21024 -15.11466 -14.83116 -14.75299 -14.51026 -14.27330 -14.06916 -13.92103 -13.68888 -13.54980 -13.51330 -13.01673 -12.65930 -12.51210 -12.28138 -11.92409 -11.82466 -11.78527 -11.55806 -11.19136 -11.13153 -10.87863 -10.78477 -10.60447 -10.57368 -10.11162 -9.71274 -9.55062 -9.36722 -8.95619 -8.48765 -8.08203 -7.02121 -6.71437 -4.21656 0.43261 0.61933 0.90022 2.02623 2.33293 2.69969 2.93485 2.99346 3.01383 3.05272 3.37207 3.51445 3.75262 3.86713 4.01053 4.17531 4.36365 4.48965 4.63715 4.78437 4.84353 4.88797 4.97476 5.07237 5.31367 5.40102 5.44229 5.47506 5.48486 5.50848 5.54668 5.59666 5.71050 5.77252 5.88783 5.99805 6.11747 6.24173 6.35688 6.43653 6.47830 6.72939 6.88928 6.98247 7.10557 7.15835 7.37781 7.68898 7.93884 7.99363 8.71333 9.39382 10.44006 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.015656 B = 0.001515 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.055072 B =18482.466009 C =20046.741951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.134 4.134 5 C -0.175 4.175 6 C 0.052 3.948 7 C -0.290 4.290 8 C 0.557 3.443 9 O -0.536 6.536 10 N -0.674 5.674 11 C 0.181 3.819 12 C -0.133 4.133 13 C -0.103 4.103 14 C 0.042 3.958 15 F -0.131 7.131 16 C 0.091 3.909 17 F -0.126 7.126 18 C -0.135 4.135 19 C -0.055 4.055 20 C -0.227 4.227 21 C 0.150 3.850 22 O -0.143 6.143 23 C -0.390 4.390 24 H 0.099 0.901 25 C 0.042 3.958 26 N -0.841 5.841 27 Si 0.946 3.054 28 H -0.270 1.270 29 H -0.275 1.275 30 H -0.264 1.264 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.417 0.583 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.117 0.883 42 H 0.138 0.862 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 21.038 -0.910 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.153 4.153 5 C -0.176 4.176 6 C 0.032 3.968 7 C -0.311 4.311 8 C 0.352 3.648 9 O -0.414 6.414 10 N -0.319 5.319 11 C 0.085 3.915 12 C -0.153 4.153 13 C -0.122 4.122 14 C 0.021 3.979 15 F -0.110 7.110 16 C 0.070 3.930 17 F -0.104 7.104 18 C -0.156 4.156 19 C -0.073 4.073 20 C -0.246 4.246 21 C 0.092 3.908 22 O -0.043 6.043 23 C -0.465 4.465 24 H 0.116 0.884 25 C -0.166 4.166 26 N -0.472 5.472 27 Si 0.770 3.230 28 H -0.196 1.196 29 H -0.200 1.200 30 H -0.189 1.189 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.254 0.746 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.176 0.824 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.865 20.197 -0.821 21.348 hybrid contribution 0.824 0.501 0.046 0.966 sum -6.041 20.698 -0.775 21.576 Atomic orbital electron populations 1.22927 0.80074 1.03156 1.00444 1.86238 1.19650 1.26158 1.89686 1.18038 0.89361 0.84653 1.07275 1.20880 0.98636 0.90904 1.04905 1.18120 0.92784 0.91297 1.15390 1.22287 0.99229 0.90961 0.84342 1.22272 0.99892 0.90897 1.18067 1.18621 0.87842 0.83576 0.74770 1.90820 1.14106 1.87223 1.49279 1.43517 1.10823 1.03951 1.73601 1.17450 0.92691 0.86752 0.94656 1.20849 1.02206 0.91446 1.00837 1.20831 0.92937 0.99794 0.98661 1.17632 0.94247 0.82244 1.03780 1.91520 1.76652 1.47927 1.94909 1.17443 0.85949 0.93685 0.95885 1.91544 1.47888 1.96984 1.74015 1.21068 0.95977 0.97899 1.00635 1.20936 0.92440 0.97382 0.96532 1.20835 1.00755 0.90716 1.12305 1.18916 0.88311 0.87645 0.95917 1.84006 1.19853 1.25860 1.74628 1.21548 0.78443 0.96459 1.50041 0.88414 1.25448 1.00971 0.94196 0.95983 1.70045 1.36714 0.98769 1.41672 0.85629 0.79658 0.78653 0.79095 1.19551 1.19973 1.18859 0.93410 0.88911 0.93396 0.85797 0.85836 0.85310 0.74635 0.83781 0.83272 0.82425 0.86542 0.84451 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.22 10.28 -34.21 -0.35 -6.57 16 3 C 0.05 1.06 6.70 -39.12 -0.26 0.80 16 4 C -0.13 -2.27 8.77 -38.99 -0.34 -2.61 16 5 C -0.17 -2.77 5.87 -105.04 -0.62 -3.39 16 6 C 0.05 0.70 9.45 -37.19 -0.35 0.35 16 7 C -0.29 -3.38 9.41 -37.51 -0.35 -3.73 16 8 C 0.56 6.65 7.47 -13.06 -0.10 6.55 16 9 O -0.54 -8.14 13.93 5.15 0.07 -8.07 16 10 N -0.67 -5.79 5.33 -11.17 -0.06 -5.85 16 11 C 0.18 1.65 6.27 -83.70 -0.53 1.13 16 12 C -0.13 -0.88 9.96 -39.38 -0.39 -1.27 16 13 C -0.10 -0.72 10.02 -39.55 -0.40 -1.11 16 14 C 0.04 0.41 7.30 -39.35 -0.29 0.12 16 15 F -0.13 -1.39 17.18 2.25 0.04 -1.35 16 16 C 0.09 1.01 7.30 -39.39 -0.29 0.72 16 17 F -0.13 -1.55 17.18 2.25 0.04 -1.51 16 18 C -0.13 -1.48 8.63 -39.33 -0.34 -1.82 16 19 C -0.05 -0.88 9.40 -39.12 -0.37 -1.25 16 20 C -0.23 -4.41 9.10 -39.49 -0.36 -4.77 16 21 C 0.15 3.41 6.67 -38.76 -0.26 3.15 16 22 O -0.14 -3.88 9.52 -13.96 -0.13 -4.01 16 23 C -0.39 -10.07 9.43 30.91 0.29 -9.78 16 24 H 0.10 2.27 5.28 -52.49 -0.28 1.99 16 25 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 26 N -0.84 -23.18 13.67 55.48 0.76 -22.43 16 27 Si 0.95 18.82 29.55 -169.99 -5.02 13.79 16 28 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 29 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 30 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 31 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 34 H 0.12 1.75 6.28 -52.49 -0.33 1.42 16 35 H 0.12 1.65 7.52 -52.49 -0.39 1.25 16 36 H 0.13 1.24 6.06 -52.49 -0.32 0.92 16 37 H 0.42 2.16 8.80 -40.82 -0.36 1.80 16 38 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.16 1.96 6.43 -52.48 -0.34 1.62 16 41 H 0.12 1.48 6.15 -52.49 -0.32 1.16 16 42 H 0.14 2.60 5.70 -52.49 -0.30 2.30 16 43 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -32.00 385.14 -6.74 -38.74 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -3.84 Total: 6.00 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -4.05 Total: -14.55 kcal Atomic # 7 Polarization: -28.97 SS G_CDS: 0.70 Total: -28.27 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.41 Total: -18.66 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.08 Total: -2.86 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.00 -6.74 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003284094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.408 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds