Wall clock time and date at job start Tue Mar 31 2020 05:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31250 * 120.28916 * 2 1 4 4 N 1.28492 * 121.44687 * 180.02562 * 3 2 1 5 5 C 1.32269 * 122.01332 * 359.97438 * 4 3 2 6 6 S 1.76200 * 119.79073 * 179.97438 * 5 4 3 7 7 C 1.80996 * 100.00212 * 0.02562 * 6 5 4 8 8 C 1.50695 * 109.47478 * 179.97438 * 7 6 5 9 9 O 1.21292 * 119.99947 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00262 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99865 * 4.73543 * 10 8 7 12 12 C 1.50703 * 109.47394 * 269.99821 * 11 10 8 13 13 H 1.08002 * 119.99483 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00162 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99870 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99971 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.46953 * 90.00003 * 16 14 12 18 18 H 1.48495 * 109.46815 * 209.99646 * 16 14 12 19 19 H 1.48500 * 109.47061 * 329.99874 * 16 14 12 20 20 C 1.39932 * 120.00052 * 184.73665 * 10 8 7 21 21 C 1.38867 * 120.06969 * 67.89610 * 20 10 8 22 22 C 1.38113 * 119.93011 * 179.97438 * 21 20 10 23 23 C 1.38283 * 120.06773 * 359.97438 * 22 21 20 24 24 C 1.38283 * 120.14290 * 0.04580 * 23 22 21 25 25 C 1.38113 * 120.06820 * 359.94780 * 24 23 22 26 26 N 1.36316 * 120.41628 * 0.25837 * 5 4 3 27 27 N 1.36600 * 120.73224 * 179.72016 * 26 5 4 28 28 C 1.35291 * 118.53747 * 359.49892 * 26 5 4 29 29 O 1.21961 * 120.92107 * 180.22356 * 28 26 5 30 30 H 1.09002 * 109.46817 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47071 * 119.99785 * 1 2 3 32 32 H 1.08996 * 109.47381 * 240.00462 * 1 2 3 33 33 H 1.08999 * 109.47456 * 59.99266 * 7 6 5 34 34 H 1.09000 * 109.47119 * 299.99628 * 7 6 5 35 35 H 1.08998 * 109.47091 * 29.99984 * 11 10 8 36 36 H 1.09009 * 109.47174 * 149.99994 * 11 10 8 37 37 H 0.96993 * 119.99919 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.03470 * 359.70272 * 21 20 10 39 39 H 1.08001 * 119.96462 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.92786 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.96455 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.03372 * 180.02562 * 25 24 23 43 43 H 1.00897 * 111.00140 * 179.97438 * 27 26 5 44 44 H 1.00901 * 111.00060 * 303.95551 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1690 1.1333 0.0000 4 7 3.4536 1.1593 -0.0005 5 6 4.1773 0.0521 -0.0005 6 16 5.9363 0.1560 -0.0019 7 6 6.1450 1.9539 -0.0021 8 6 7.6142 2.2891 -0.0026 9 8 8.4391 1.3999 -0.0023 10 7 8.0116 3.5770 -0.0033 11 6 7.0194 4.6498 0.1011 12 6 6.5668 5.0516 -1.2791 13 1 6.9769 4.5569 -2.1471 14 6 5.6284 6.0498 -1.4335 15 7 5.2330 6.4001 -2.6379 16 14 4.9186 6.9048 0.0681 17 1 5.7543 8.0846 0.4071 18 1 3.5318 7.3481 -0.2242 19 1 4.9055 5.9615 1.2148 20 6 9.3719 3.8894 -0.1039 21 6 10.0600 3.6306 -1.2820 22 6 11.4024 3.9406 -1.3783 23 6 12.0612 4.5086 -0.3032 24 6 11.3789 4.7671 0.8715 25 6 10.0363 4.4596 0.9740 26 7 3.5709 -1.1687 -0.0053 27 7 4.3120 -2.3162 -0.0111 28 6 2.2190 -1.2189 0.0004 29 8 1.6315 -2.2877 0.0005 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 -0.3634 -0.5137 0.8900 33 1 5.6771 2.3742 0.8882 34 1 5.6758 2.3741 -0.8917 35 1 6.1630 4.2979 0.6762 36 1 7.4650 5.5093 0.6019 37 1 4.5726 7.1021 -2.7465 38 1 9.5470 3.1834 -2.1206 39 1 11.9382 3.7392 -2.2941 40 1 13.1110 4.7497 -0.3808 41 1 11.8963 5.2104 1.7094 42 1 9.5039 4.6621 1.8916 43 1 3.7169 -3.1310 -0.0137 44 1 4.9494 -2.3311 -0.7932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003309489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:17 Heat of formation + Delta-G solvation = 66.302912 kcal Electronic energy + Delta-G solvation = -31204.898449 eV Core-core repulsion = 26865.397880 eV Total energy + Delta-G solvation = -4339.500569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 375.115 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.44538 -40.15966 -38.66775 -38.15395 -37.40280 -35.38491 -33.19307 -32.68750 -31.14091 -30.89670 -30.65475 -29.19898 -28.59823 -27.63543 -24.96142 -24.28184 -23.00130 -22.52093 -22.02070 -20.32223 -19.46880 -18.80327 -18.14669 -17.34283 -17.25858 -17.18412 -16.35781 -16.18078 -15.71597 -15.51087 -15.41902 -14.53939 -14.48610 -14.26363 -14.23230 -13.93344 -13.85943 -13.69469 -13.25457 -13.13476 -12.64089 -12.61491 -12.54361 -12.45439 -12.37519 -12.29351 -12.09017 -11.52946 -11.22667 -11.04760 -10.93421 -10.90305 -10.74094 -10.46283 -10.38401 -9.88771 -9.75519 -9.72045 -9.01203 -8.80573 -8.78903 -8.64452 -8.06035 -7.89572 -6.28418 -4.32474 0.04604 0.59797 1.12570 1.49088 1.57114 1.69490 1.75958 2.81283 3.06623 3.16421 3.22835 3.25483 3.44394 3.51644 3.88544 4.05799 4.22167 4.28071 4.71896 4.78892 5.01587 5.02397 5.17625 5.19791 5.24339 5.34763 5.39948 5.41583 5.63061 5.66772 5.73750 5.82775 5.84932 5.87033 6.18379 6.25847 6.32457 6.33507 6.44101 6.62327 6.75445 6.80804 6.95919 7.20002 7.29580 7.34467 7.69436 8.22205 8.34799 8.43325 8.73988 9.29114 10.83672 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.009335 B = 0.003115 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.787170 B = 8986.206297 C =11333.154190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.007 4.007 3 N -0.167 5.167 4 N -0.316 5.316 5 C 0.283 3.717 6 S 0.118 5.882 7 C -0.147 4.147 8 C 0.542 3.458 9 O -0.542 6.542 10 N -0.543 5.543 11 C 0.206 3.794 12 C -0.548 4.548 13 H 0.080 0.920 14 C 0.084 3.916 15 N -0.884 5.884 16 Si 0.869 3.131 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.262 1.262 20 C 0.169 3.831 21 C -0.100 4.100 22 C -0.112 4.112 23 C -0.130 4.130 24 C -0.114 4.114 25 C -0.124 4.124 26 N -0.339 5.339 27 N -0.595 5.595 28 C 0.490 3.510 29 O -0.521 6.521 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.151 0.849 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.268 0.732 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.387 0.613 44 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 -10.851 5.637 12.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.182 4.182 3 N -0.004 5.004 4 N -0.165 5.165 5 C -0.086 4.086 6 S 0.350 5.650 7 C -0.298 4.298 8 C 0.329 3.671 9 O -0.421 6.421 10 N -0.270 5.270 11 C 0.086 3.914 12 C -0.586 4.586 13 H 0.098 0.902 14 C -0.121 4.121 15 N -0.521 5.521 16 Si 0.695 3.305 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.186 1.186 20 C 0.078 3.922 21 C -0.119 4.119 22 C -0.131 4.131 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.143 4.143 26 N -0.149 5.149 27 N -0.230 5.230 28 C 0.281 3.719 29 O -0.392 6.392 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.150 0.850 34 H 0.169 0.831 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.208 0.792 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.572 -10.941 6.213 12.842 hybrid contribution -1.847 -0.020 -0.357 1.882 sum 0.725 -10.961 5.856 12.448 Atomic orbital electron populations 1.20418 0.85318 1.04356 1.03472 1.24314 1.00344 0.87233 1.06329 1.72174 1.00849 1.25079 1.02292 1.74150 1.00083 1.17479 1.24822 1.27997 1.04688 0.82346 0.93595 1.86439 0.84595 1.07743 1.86184 1.24015 0.99261 0.94693 1.11815 1.19428 0.88602 0.82700 0.76340 1.90711 1.54142 1.46178 1.51085 1.45426 1.05244 1.06335 1.70010 1.20091 0.86631 0.85406 0.99269 1.21203 1.24840 1.21252 0.91279 0.90194 1.24799 0.95544 0.95966 0.95783 1.69864 1.30881 1.29847 1.21464 0.86957 0.79298 0.80668 0.83578 1.19937 1.20570 1.18642 1.17497 0.83373 0.98054 0.93293 1.21252 0.94563 0.99429 0.96663 1.20977 0.94097 0.99286 0.98714 1.21065 0.99683 1.00406 0.93693 1.20907 0.93874 1.00556 0.97955 1.21174 0.94644 1.00705 0.97790 1.45339 1.06826 1.04069 1.58652 1.60281 1.16409 0.96040 1.50223 1.18450 0.80385 0.92879 0.80157 1.90960 1.66155 1.30870 1.51243 0.89283 0.90017 0.89976 0.84965 0.83080 0.94017 0.94524 0.92161 0.85970 0.86056 0.86339 0.86091 0.86029 0.79238 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.80 36.00 0.35 -0.43 16 2 C -0.01 -0.10 6.93 -81.73 -0.57 -0.66 16 3 N -0.17 -2.65 11.43 33.99 0.39 -2.26 16 4 N -0.32 -5.14 10.27 30.80 0.32 -4.82 16 5 C 0.28 4.02 7.91 -87.71 -0.69 3.33 16 6 S 0.12 1.60 20.22 -107.50 -2.17 -0.58 16 7 C -0.15 -2.37 3.98 36.00 0.14 -2.22 16 8 C 0.54 9.93 7.54 -10.99 -0.08 9.85 16 9 O -0.54 -10.61 15.62 5.55 0.09 -10.52 16 10 N -0.54 -10.44 2.51 -114.74 -0.29 -10.72 16 11 C 0.21 4.26 3.95 -5.19 -0.02 4.24 16 12 C -0.55 -13.64 9.71 -34.44 -0.33 -13.97 16 13 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 15 N -0.88 -24.93 13.96 55.43 0.77 -24.15 16 16 Si 0.87 19.37 27.47 -169.99 -4.67 14.70 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.26 -5.45 6.54 56.52 0.37 -5.08 16 20 C 0.17 3.11 4.75 -83.69 -0.40 2.71 16 21 C -0.10 -1.75 9.55 -39.39 -0.38 -2.13 16 22 C -0.11 -1.64 10.04 -39.61 -0.40 -2.03 16 23 C -0.13 -1.72 10.04 -39.55 -0.40 -2.11 16 24 C -0.11 -1.56 10.04 -39.61 -0.40 -1.95 16 25 C -0.12 -1.98 9.69 -39.39 -0.38 -2.36 16 26 N -0.34 -4.36 3.52 -14.47 -0.05 -4.41 16 27 N -0.59 -5.84 9.69 60.35 0.58 -5.26 16 28 C 0.49 6.82 7.57 -14.92 -0.11 6.70 16 29 O -0.52 -7.67 16.19 4.95 0.08 -7.59 16 30 H 0.09 0.83 8.12 -51.93 -0.42 0.40 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.13 2.02 7.24 -51.92 -0.38 1.64 16 34 H 0.15 2.66 7.89 -51.92 -0.41 2.25 16 35 H 0.04 0.83 5.53 -51.93 -0.29 0.54 16 36 H 0.04 0.75 7.29 -51.92 -0.38 0.37 16 37 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.12 1.78 8.06 -52.48 -0.42 1.35 16 43 H 0.39 3.39 7.76 -181.37 -1.41 1.99 16 44 H 0.37 2.84 8.68 -181.36 -1.57 1.27 16 LS Contribution 394.06 15.07 5.94 5.94 Total: -1.00 -31.61 394.06 -10.18 -41.78 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.40 Total: 6.85 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.76 Total: 1.04 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 1.72 Total: -51.63 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.17 Total: -18.11 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.67 Total: 14.70 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.17 Total: -0.58 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.61 -10.18 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003309489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.087 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds