Wall clock time and date at job start Tue Mar 31 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86804 * 119.99678 * 2 1 4 4 H 1.48500 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47064 * 299.99575 * 3 2 1 6 6 H 1.48499 * 109.47098 * 59.99745 * 3 2 1 7 7 C 1.40116 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99980 * 180.02562 * 7 2 1 9 9 C 1.46199 * 120.00284 * 359.97438 * 7 2 1 10 10 O 1.21732 * 119.99575 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00342 * 180.02562 * 9 7 2 12 12 C 1.39068 * 119.99940 * 175.73531 * 11 9 7 13 13 C 1.39270 * 119.93667 * 34.91585 * 12 11 9 14 14 C 1.37609 * 120.06965 * 179.76555 * 13 12 11 15 15 C 1.39836 * 119.92887 * 0.53345 * 14 13 12 16 16 C 1.47470 * 120.06615 * 179.74333 * 15 14 13 17 17 O 1.21503 * 119.99779 * 179.97438 * 16 15 14 18 18 O 1.34750 * 119.99773 * 359.97438 * 16 15 14 19 19 C 1.45199 * 116.99974 * 180.02562 * 18 16 15 20 20 C 1.50696 * 109.47380 * 179.97438 * 19 18 16 21 21 O 1.21280 * 120.00205 * 359.97438 * 20 19 18 22 22 N 1.34780 * 120.00098 * 179.97438 * 20 19 18 23 23 C 1.46500 * 119.99920 * 180.02562 * 22 20 19 24 24 C 1.52999 * 109.46937 * 180.02562 * 23 22 20 25 25 H 1.09000 * 110.27749 * 59.30149 * 24 23 22 26 26 C 1.54948 * 110.30809 * 181.38953 * 24 23 22 27 27 C 1.55422 * 100.89206 * 155.28761 * 26 24 23 28 28 C 1.54379 * 102.30697 * 325.99083 * 27 26 24 29 29 O 1.43240 * 107.59385 * 21.28658 * 28 27 26 30 30 C 1.39832 * 119.86815 * 359.72136 * 15 14 13 31 31 C 1.37603 * 119.93166 * 359.97438 * 30 15 14 32 32 H 0.97003 * 120.00507 * 0.02562 * 1 2 3 33 33 H 0.96998 * 119.99706 * 355.44884 * 11 9 7 34 34 H 1.08003 * 119.96501 * 0.02562 * 13 12 11 35 35 H 1.07997 * 120.03397 * 180.23497 * 14 13 12 36 36 H 1.09013 * 109.46785 * 299.99814 * 19 18 16 37 37 H 1.09003 * 109.47212 * 59.99090 * 19 18 16 38 38 H 0.97006 * 119.99720 * 0.02562 * 22 20 19 39 39 H 1.08996 * 109.47122 * 300.00203 * 23 22 20 40 40 H 1.09001 * 109.47012 * 60.00159 * 23 22 20 41 41 H 1.08998 * 111.12292 * 273.27560 * 26 24 23 42 42 H 1.08996 * 111.12377 * 37.44504 * 26 24 23 43 43 H 1.08999 * 110.88055 * 207.75271 * 27 26 24 44 44 H 1.08996 * 110.93164 * 84.24910 * 27 26 24 45 45 H 1.08995 * 109.83174 * 261.76762 * 28 27 26 46 46 H 1.08999 * 109.82740 * 140.79851 * 28 27 26 47 47 H 1.08001 * 120.03877 * 180.02562 * 30 15 14 48 48 H 1.08006 * 119.97026 * 179.97438 * 31 30 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8815 2.3965 1.2125 7 6 2.0070 -1.2134 0.0005 8 1 3.0870 -1.2134 0.0010 9 6 1.2761 -2.4796 0.0017 10 8 0.0588 -2.4796 0.0017 11 7 1.9500 -3.6468 0.0027 12 6 1.2575 -4.8494 0.0934 13 6 0.0111 -4.9812 -0.5138 14 6 -0.6743 -6.1715 -0.4300 15 6 -0.1231 -7.2458 0.2753 16 6 -0.8575 -8.5209 0.3719 17 8 -0.3772 -9.4537 0.9846 18 8 -2.0613 -8.6515 -0.2194 19 6 -2.7273 -9.9345 -0.0826 20 6 -4.0504 -9.8930 -0.8026 21 8 -4.3983 -8.8816 -1.3744 22 7 -4.8473 -10.9800 -0.8112 23 6 -6.1334 -10.9398 -1.5116 24 6 -6.8351 -12.2917 -1.3674 25 1 -6.9985 -12.5221 -0.3146 26 6 -8.1831 -12.2822 -2.1313 27 6 -8.3743 -13.7994 -2.4086 28 6 -6.9222 -14.2821 -2.6129 29 8 -6.0565 -13.3265 -1.9891 30 6 1.1262 -7.1087 0.8884 31 6 1.8095 -5.9180 0.7957 32 1 -0.4851 0.8400 -0.0004 33 1 2.9177 -3.6481 -0.0639 34 1 -0.4161 -4.1496 -1.0547 35 1 -1.6391 -6.2742 -0.9043 36 1 -2.1023 -10.7161 -0.5148 37 1 -2.8950 -10.1460 0.9735 38 1 -4.5693 -11.7888 -0.3536 39 1 -6.7584 -10.1585 -1.0793 40 1 -5.9655 -10.7280 -2.5676 41 1 -8.9860 -11.8913 -1.5062 42 1 -8.1033 -11.7205 -3.0619 43 1 -8.9663 -13.9581 -3.3100 44 1 -8.8318 -14.2970 -1.5535 45 1 -6.6992 -14.3432 -3.6780 46 1 -6.7888 -15.2596 -2.1494 47 1 1.5547 -7.9368 1.4334 48 1 2.7743 -5.8113 1.2693 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003352500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:51 Heat of formation + Delta-G solvation = -176.933482 kcal Electronic energy + Delta-G solvation = -32100.725536 eV Core-core repulsion = 27313.746255 eV Total energy + Delta-G solvation = -4786.979281 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.65542 -40.20068 -39.45229 -38.98348 -36.99903 -36.18736 -35.11723 -33.63480 -32.77870 -32.56771 -31.25949 -30.52976 -29.81578 -28.58596 -26.51517 -25.65821 -23.53381 -22.36226 -22.26326 -21.87766 -21.08124 -20.75153 -19.79775 -18.10674 -17.83535 -17.61465 -17.37415 -16.73814 -16.71233 -16.27700 -16.16322 -15.93938 -15.56908 -15.45232 -14.94655 -14.52757 -14.30590 -14.06545 -13.99906 -13.72034 -13.47316 -13.19796 -13.17233 -12.95363 -12.77127 -12.66891 -12.53342 -12.37754 -11.99018 -11.91480 -11.89007 -11.85756 -11.45012 -11.33183 -11.16723 -10.83031 -10.78773 -10.67241 -10.43282 -10.36022 -10.10956 -10.07219 -9.46947 -9.45843 -8.98266 -8.58021 -7.83013 -7.31829 -6.42268 -4.90442 1.13876 1.90433 2.15479 2.31444 2.83138 3.03173 3.05627 3.11354 3.15692 3.30774 3.83500 3.92851 4.10446 4.16840 4.26617 4.36733 4.42230 4.49181 4.51023 4.55871 4.72205 4.82435 4.86159 5.02103 5.04844 5.08587 5.16643 5.19119 5.28873 5.30970 5.39841 5.41655 5.53224 5.53674 5.81000 5.94697 5.97462 6.11990 6.25555 6.41169 6.49356 6.69757 6.83484 6.95719 7.07874 7.19570 7.25533 7.60199 7.85432 7.90900 7.92134 8.05039 8.77299 9.06892 10.27049 10.47668 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.017343 B = 0.001324 C = 0.001242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.126800 B =21141.705535 C =22540.468969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.538 3.462 10 O -0.554 6.554 11 N -0.694 5.694 12 C 0.234 3.766 13 C -0.149 4.149 14 C -0.036 4.036 15 C -0.187 4.187 16 C 0.521 3.479 17 O -0.524 6.524 18 O -0.329 6.329 19 C 0.050 3.950 20 C 0.515 3.485 21 O -0.512 6.512 22 N -0.725 5.725 23 C 0.125 3.875 24 C 0.067 3.933 25 H 0.080 0.920 26 C -0.149 4.149 27 C -0.156 4.156 28 C 0.050 3.950 29 O -0.378 6.378 30 C -0.027 4.027 31 C -0.193 4.193 32 H 0.273 0.727 33 H 0.397 0.603 34 H 0.152 0.848 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.406 0.594 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.130 0.870 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.221 -26.524 -2.528 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.345 3.655 10 O -0.436 6.436 11 N -0.336 5.336 12 C 0.132 3.868 13 C -0.170 4.170 14 C -0.055 4.055 15 C -0.190 4.190 16 C 0.369 3.631 17 O -0.415 6.415 18 O -0.245 6.245 19 C -0.027 4.027 20 C 0.300 3.700 21 O -0.386 6.386 22 N -0.379 5.379 23 C 0.001 3.999 24 C 0.010 3.990 25 H 0.098 0.902 26 C -0.187 4.187 27 C -0.193 4.193 28 C -0.026 4.026 29 O -0.297 6.297 30 C -0.046 4.046 31 C -0.215 4.215 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.170 0.830 35 H 0.152 0.848 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.240 0.760 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.148 0.852 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.164 -25.795 -2.777 29.093 hybrid contribution 0.760 0.119 0.342 0.842 sum -12.404 -25.676 -2.435 28.619 Atomic orbital electron populations 1.69984 1.07190 1.27936 1.33238 1.25757 0.94732 1.00620 0.92492 0.86198 0.80433 0.81089 0.78447 1.18582 1.19921 1.19950 1.20891 0.93912 0.88798 1.53462 0.90769 1.18493 0.87587 0.82033 0.77373 1.90640 1.13588 1.85754 1.53586 1.44255 1.10072 1.04364 1.74861 1.18335 0.92537 0.86191 0.89704 1.21528 0.95655 0.97986 1.01805 1.21359 0.98777 0.91232 0.94160 1.18729 0.97400 0.91950 1.10935 1.21356 0.78442 0.88464 0.74847 1.90785 1.68216 1.41297 1.41195 1.86655 1.32664 1.34949 1.70228 1.22550 0.92059 0.85987 1.02137 1.20122 0.85368 0.83499 0.81018 1.90789 1.73685 1.31031 1.43054 1.45666 1.20183 1.15533 1.56568 1.21544 0.84175 0.95651 0.98530 1.23263 0.90563 0.87641 0.97565 0.90194 1.23265 0.96847 0.96891 1.01671 1.23141 0.97384 0.95558 1.03264 1.23139 0.88751 0.92528 0.98190 1.88451 1.32047 1.36567 1.72664 1.20801 0.91824 0.96891 0.95119 1.20835 1.02655 0.93850 1.04124 0.91603 0.76890 0.83020 0.84818 0.88101 0.88161 0.75957 0.89794 0.90484 0.89264 0.89642 0.89715 0.90349 0.91112 0.91234 0.85197 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.47 11.82 55.55 0.66 -20.81 16 2 C 0.09 2.25 5.50 -17.35 -0.10 2.16 16 3 Si 0.91 19.04 29.56 -169.99 -5.02 14.02 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.53 -14.12 9.54 -35.68 -0.34 -14.46 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.54 14.38 7.57 -13.07 -0.10 14.28 16 10 O -0.55 -16.72 12.42 5.16 0.06 -16.66 16 11 N -0.69 -14.83 5.29 -11.18 -0.06 -14.89 16 12 C 0.23 4.71 6.30 -83.81 -0.53 4.19 16 13 C -0.15 -3.12 8.66 -39.43 -0.34 -3.46 16 14 C -0.04 -0.67 9.60 -39.21 -0.38 -1.04 16 15 C -0.19 -3.25 5.88 -104.94 -0.62 -3.87 16 16 C 0.52 8.57 7.89 34.49 0.27 8.84 16 17 O -0.52 -8.91 16.13 -19.27 -0.31 -9.22 16 18 O -0.33 -5.11 9.00 -47.31 -0.43 -5.54 16 19 C 0.05 0.57 5.95 36.00 0.21 0.78 16 20 C 0.52 6.07 7.91 -10.99 -0.09 5.98 16 21 O -0.51 -8.38 16.50 -14.10 -0.23 -8.61 16 22 N -0.72 -5.87 5.49 -60.30 -0.33 -6.21 16 23 C 0.12 0.91 5.40 -4.04 -0.02 0.89 16 24 C 0.07 0.36 3.49 -25.70 -0.09 0.27 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 26 C -0.15 -0.56 6.58 -24.42 -0.16 -0.72 16 27 C -0.16 -0.49 7.02 -24.72 -0.17 -0.66 16 28 C 0.05 0.24 7.80 37.88 0.30 0.53 16 29 O -0.38 -2.66 10.95 -35.23 -0.39 -3.04 16 30 C -0.03 -0.44 9.58 -39.22 -0.38 -0.82 16 31 C -0.19 -3.24 9.95 -39.43 -0.39 -3.63 16 32 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 33 H 0.40 7.11 8.80 -40.82 -0.36 6.75 16 34 H 0.15 3.61 6.20 -52.48 -0.33 3.29 16 35 H 0.13 2.35 7.60 -52.49 -0.40 1.95 16 36 H 0.10 0.95 8.14 -51.92 -0.42 0.52 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.41 2.31 8.45 -40.82 -0.34 1.97 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.34 8.06 -51.93 -0.42 -0.08 16 43 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.13 1.87 7.64 -52.49 -0.40 1.47 16 48 H 0.13 1.80 8.06 -52.48 -0.42 1.37 16 LS Contribution 415.44 15.07 6.26 6.26 Total: -1.00 -36.37 415.44 -9.15 -45.52 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.44 Total: 9.92 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -2.92 Total: 9.26 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.27 Total: -41.90 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.29 Total: -43.07 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.37 -9.15 -45.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003352500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.416 kcal (2) G-P(sol) polarization free energy of solvation -36.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds