Wall clock time and date at job start Tue Mar 31 2020 06:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86804 * 119.99678 * 2 1 4 4 H 1.48500 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47064 * 299.99575 * 3 2 1 6 6 H 1.48499 * 109.47098 * 59.99745 * 3 2 1 7 7 C 1.40116 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99980 * 180.02562 * 7 2 1 9 9 C 1.46199 * 120.00284 * 359.97438 * 7 2 1 10 10 O 1.21732 * 119.99575 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00342 * 180.02562 * 9 7 2 12 12 C 1.39068 * 119.99940 * 175.73531 * 11 9 7 13 13 C 1.39270 * 119.93667 * 34.91585 * 12 11 9 14 14 C 1.37609 * 120.06965 * 179.76555 * 13 12 11 15 15 C 1.39836 * 119.92887 * 0.53345 * 14 13 12 16 16 C 1.47470 * 120.06615 * 179.74333 * 15 14 13 17 17 O 1.21503 * 119.99779 * 179.97438 * 16 15 14 18 18 O 1.34750 * 119.99773 * 359.97438 * 16 15 14 19 19 C 1.45199 * 116.99974 * 180.02562 * 18 16 15 20 20 C 1.50696 * 109.47380 * 179.97438 * 19 18 16 21 21 O 1.21280 * 120.00205 * 359.97438 * 20 19 18 22 22 N 1.34780 * 120.00098 * 179.97438 * 20 19 18 23 23 C 1.46500 * 119.99920 * 180.02562 * 22 20 19 24 24 C 1.52999 * 109.46937 * 180.02562 * 23 22 20 25 25 H 1.09000 * 110.27749 * 59.30149 * 24 23 22 26 26 C 1.54948 * 110.30809 * 181.38953 * 24 23 22 27 27 C 1.55422 * 100.89206 * 155.28761 * 26 24 23 28 28 C 1.54379 * 102.30697 * 325.99083 * 27 26 24 29 29 O 1.43240 * 107.59385 * 21.28658 * 28 27 26 30 30 C 1.39832 * 119.86815 * 359.72136 * 15 14 13 31 31 C 1.37603 * 119.93166 * 359.97438 * 30 15 14 32 32 H 0.97003 * 120.00507 * 0.02562 * 1 2 3 33 33 H 0.96998 * 119.99706 * 355.44884 * 11 9 7 34 34 H 1.08003 * 119.96501 * 0.02562 * 13 12 11 35 35 H 1.07997 * 120.03397 * 180.23497 * 14 13 12 36 36 H 1.09013 * 109.46785 * 299.99814 * 19 18 16 37 37 H 1.09003 * 109.47212 * 59.99090 * 19 18 16 38 38 H 0.97006 * 119.99720 * 0.02562 * 22 20 19 39 39 H 1.08996 * 109.47122 * 300.00203 * 23 22 20 40 40 H 1.09001 * 109.47012 * 60.00159 * 23 22 20 41 41 H 1.08998 * 111.12292 * 273.27560 * 26 24 23 42 42 H 1.08996 * 111.12377 * 37.44504 * 26 24 23 43 43 H 1.08999 * 110.88055 * 207.75271 * 27 26 24 44 44 H 1.08996 * 110.93164 * 84.24910 * 27 26 24 45 45 H 1.08995 * 109.83174 * 261.76762 * 28 27 26 46 46 H 1.08999 * 109.82740 * 140.79851 * 28 27 26 47 47 H 1.08001 * 120.03877 * 180.02562 * 30 15 14 48 48 H 1.08006 * 119.97026 * 179.97438 * 31 30 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8815 2.3965 1.2125 7 6 2.0070 -1.2134 0.0005 8 1 3.0870 -1.2134 0.0010 9 6 1.2761 -2.4796 0.0017 10 8 0.0588 -2.4796 0.0017 11 7 1.9500 -3.6468 0.0027 12 6 1.2575 -4.8494 0.0934 13 6 0.0111 -4.9812 -0.5138 14 6 -0.6743 -6.1715 -0.4300 15 6 -0.1231 -7.2458 0.2753 16 6 -0.8575 -8.5209 0.3719 17 8 -0.3772 -9.4537 0.9846 18 8 -2.0613 -8.6515 -0.2194 19 6 -2.7273 -9.9345 -0.0826 20 6 -4.0504 -9.8930 -0.8026 21 8 -4.3983 -8.8816 -1.3744 22 7 -4.8473 -10.9800 -0.8112 23 6 -6.1334 -10.9398 -1.5116 24 6 -6.8351 -12.2917 -1.3674 25 1 -6.9985 -12.5221 -0.3146 26 6 -8.1831 -12.2822 -2.1313 27 6 -8.3743 -13.7994 -2.4086 28 6 -6.9222 -14.2821 -2.6129 29 8 -6.0565 -13.3265 -1.9891 30 6 1.1262 -7.1087 0.8884 31 6 1.8095 -5.9180 0.7957 32 1 -0.4851 0.8400 -0.0004 33 1 2.9177 -3.6481 -0.0639 34 1 -0.4161 -4.1496 -1.0547 35 1 -1.6391 -6.2742 -0.9043 36 1 -2.1023 -10.7161 -0.5148 37 1 -2.8950 -10.1460 0.9735 38 1 -4.5693 -11.7888 -0.3536 39 1 -6.7584 -10.1585 -1.0793 40 1 -5.9655 -10.7280 -2.5676 41 1 -8.9860 -11.8913 -1.5062 42 1 -8.1033 -11.7205 -3.0619 43 1 -8.9663 -13.9581 -3.3100 44 1 -8.8318 -14.2970 -1.5535 45 1 -6.6992 -14.3432 -3.6780 46 1 -6.7888 -15.2596 -2.1494 47 1 1.5547 -7.9368 1.4334 48 1 2.7743 -5.8113 1.2693 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003352500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:49 Heat of formation + Delta-G solvation = -202.485912 kcal Electronic energy + Delta-G solvation = -32101.833573 eV Core-core repulsion = 27313.746255 eV Total energy + Delta-G solvation = -4788.087317 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.83103 -41.03252 -40.65727 -40.07185 -38.69940 -37.45318 -35.94848 -35.42231 -34.57495 -33.15787 -32.09380 -31.85888 -31.20659 -29.57063 -28.37224 -26.31309 -24.96211 -23.75474 -22.79417 -22.55986 -22.30146 -21.62908 -21.45568 -19.57972 -19.24289 -18.60596 -18.11022 -18.02704 -17.73753 -17.62442 -17.49449 -16.91743 -16.59420 -16.26625 -16.12204 -15.72693 -15.64887 -15.40237 -15.04249 -14.81267 -14.68688 -14.54077 -14.23631 -14.16551 -14.02561 -13.70582 -13.56054 -13.44739 -13.38343 -13.10972 -12.82239 -12.73879 -12.70138 -12.36090 -12.20613 -12.20064 -11.98984 -11.92378 -11.76023 -11.72574 -11.16782 -11.08803 -10.90922 -10.52696 -10.27046 -10.10323 -9.80974 -8.97884 -8.38606 -6.96690 -0.29960 0.45455 1.16106 1.36092 1.38755 1.41309 1.48024 1.59322 2.20014 2.24190 2.35651 2.76810 2.78222 2.88022 3.49570 3.52738 3.53856 3.69824 3.74606 3.91666 3.97314 4.00960 4.02157 4.04146 4.12291 4.18528 4.36773 4.37481 4.47618 4.55661 4.62772 4.66971 4.83591 4.91675 4.96775 4.97886 5.02059 5.09058 5.22113 5.24956 5.25947 5.30242 5.32812 5.42096 5.67515 5.77809 6.01219 6.13107 6.24971 6.32297 6.62253 6.76562 7.04640 7.26444 8.30092 8.54483 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.017343 B = 0.001324 C = 0.001242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.126800 B =21141.705535 C =22540.468969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.030 3.970 3 Si 1.001 2.999 4 H -0.243 1.243 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.560 4.560 8 H 0.097 0.903 9 C 0.525 3.475 10 O -0.602 6.602 11 N -0.686 5.686 12 C 0.206 3.794 13 C -0.171 4.171 14 C -0.036 4.036 15 C -0.185 4.185 16 C 0.528 3.472 17 O -0.525 6.525 18 O -0.347 6.347 19 C 0.045 3.955 20 C 0.516 3.484 21 O -0.567 6.567 22 N -0.705 5.705 23 C 0.121 3.879 24 C 0.072 3.928 25 H 0.096 0.904 26 C -0.149 4.149 27 C -0.149 4.149 28 C 0.042 3.958 29 O -0.401 6.401 30 C -0.019 4.019 31 C -0.172 4.172 32 H 0.278 0.722 33 H 0.414 0.586 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.420 0.580 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.161 0.839 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.959 -28.613 -1.248 30.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.166 1.166 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.595 4.595 8 H 0.115 0.885 9 C 0.332 3.668 10 O -0.487 6.487 11 N -0.329 5.329 12 C 0.106 3.894 13 C -0.192 4.192 14 C -0.055 4.055 15 C -0.188 4.188 16 C 0.376 3.624 17 O -0.417 6.417 18 O -0.262 6.262 19 C -0.031 4.031 20 C 0.301 3.699 21 O -0.445 6.445 22 N -0.359 5.359 23 C -0.002 4.002 24 C 0.014 3.986 25 H 0.114 0.886 26 C -0.187 4.187 27 C -0.187 4.187 28 C -0.034 4.034 29 O -0.321 6.321 30 C -0.037 4.037 31 C -0.193 4.193 32 H 0.088 0.912 33 H 0.250 0.750 34 H 0.130 0.870 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.258 0.742 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.178 0.822 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.880 -28.003 -1.489 30.455 hybrid contribution 0.270 0.504 -0.079 0.577 sum -11.610 -27.499 -1.567 29.890 Atomic orbital electron populations 1.70149 1.09621 1.29418 1.34892 1.27009 0.95522 1.05059 0.91103 0.84907 0.79499 0.75078 0.78485 1.16601 1.19456 1.19449 1.21445 0.95175 0.89263 1.53638 0.88481 1.18841 0.87275 0.83794 0.76886 1.90610 1.15605 1.86929 1.55536 1.43736 1.10690 1.03648 1.74819 1.18541 0.92612 0.86791 0.91413 1.21267 0.96971 0.97823 1.03163 1.21276 0.98722 0.90943 0.94577 1.18971 0.97967 0.91975 1.09846 1.21029 0.78697 0.87883 0.74824 1.90780 1.68424 1.41158 1.41301 1.86624 1.32303 1.37373 1.69930 1.22905 0.91708 0.84661 1.03854 1.20313 0.85746 0.83444 0.80368 1.90774 1.74924 1.33163 1.45673 1.45579 1.19857 1.15018 1.55464 1.21644 0.83830 0.97330 0.97403 1.23290 0.90699 0.86048 0.98546 0.88643 1.23297 0.96378 0.97527 1.01486 1.23136 0.96504 0.94821 1.04236 1.23291 0.89498 0.92516 0.98060 1.88414 1.33420 1.37244 1.73035 1.21145 0.90988 0.97383 0.94206 1.21111 1.03559 0.92399 1.02213 0.91190 0.74952 0.87038 0.84865 0.85777 0.85650 0.74245 0.89696 0.92184 0.87786 0.90284 0.88747 0.89231 0.91347 0.90394 0.82153 0.81908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.99 11.82 21.85 0.26 -47.73 16 2 C 0.03 1.58 5.50 85.33 0.47 2.05 16 3 Si 1.00 39.05 29.56 68.60 2.03 41.08 16 4 H -0.24 -8.65 7.11 99.48 0.71 -7.94 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.56 -29.97 9.54 24.80 0.24 -29.74 16 8 H 0.10 4.56 7.85 -2.91 -0.02 4.53 16 9 C 0.52 29.13 7.57 86.31 0.65 29.79 16 10 O -0.60 -38.56 12.42 -4.45 -0.06 -38.62 16 11 N -0.69 -29.77 5.29 -307.50 -1.63 -31.40 16 12 C 0.21 8.40 6.30 38.49 0.24 8.65 16 13 C -0.17 -7.59 8.66 22.37 0.19 -7.39 16 14 C -0.04 -1.38 9.60 22.51 0.22 -1.16 16 15 C -0.19 -6.22 5.88 -20.07 -0.12 -6.33 16 16 C 0.53 16.49 7.89 70.26 0.55 17.04 16 17 O -0.53 -16.32 16.13 19.83 0.32 -16.00 16 18 O -0.35 -10.51 9.00 -50.21 -0.45 -10.96 16 19 C 0.05 0.95 5.95 71.23 0.42 1.37 16 20 C 0.52 11.98 7.91 87.66 0.69 12.67 16 21 O -0.57 -19.20 16.50 15.77 0.26 -18.94 16 22 N -0.70 -10.79 5.49 -463.07 -2.54 -13.33 16 23 C 0.12 1.74 5.40 86.38 0.47 2.21 16 24 C 0.07 0.67 3.49 31.26 0.11 0.78 16 25 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 26 C -0.15 -0.92 6.58 32.09 0.21 -0.71 16 27 C -0.15 -0.67 7.02 31.90 0.22 -0.44 16 28 C 0.04 0.35 7.80 72.45 0.56 0.91 16 29 O -0.40 -5.20 10.95 -148.98 -1.63 -6.83 16 30 C -0.02 -0.55 9.58 22.51 0.22 -0.34 16 31 C -0.17 -5.39 9.95 22.37 0.22 -5.16 16 32 H 0.28 14.87 8.29 -92.71 -0.77 14.10 16 33 H 0.41 14.60 8.80 -92.71 -0.82 13.79 16 34 H 0.11 5.85 6.20 -2.91 -0.02 5.83 16 35 H 0.13 4.98 7.60 -2.91 -0.02 4.96 16 36 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.42 4.02 8.45 -92.70 -0.78 3.24 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.08 0.59 8.06 -2.39 -0.02 0.57 16 43 H 0.09 0.25 8.14 -2.39 -0.02 0.24 16 44 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.16 3.89 7.64 -2.91 -0.02 3.87 16 48 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -83.64 415.44 1.57 -82.07 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -0.57 Total: 36.47 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 5.58 Total: 24.20 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -3.91 Total: -92.47 kcal Atomic # 8 Polarization: -89.79 SS G_CDS: -1.56 Total: -91.35 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -83.64 1.57 -82.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003352500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.417 kcal (2) G-P(sol) polarization free energy of solvation -83.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds