Wall clock time and date at job start Tue Mar 31 2020 06:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86800 * 119.99899 * 2 1 4 4 H 1.48502 * 109.47063 * 274.97901 * 3 2 1 5 5 H 1.48498 * 109.47158 * 34.98191 * 3 2 1 6 6 H 1.48500 * 109.46823 * 154.98283 * 3 2 1 7 7 C 1.40115 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00258 * 173.81456 * 7 2 1 9 9 C 1.46203 * 120.00079 * 353.82033 * 7 2 1 10 10 O 1.21716 * 120.00000 * 6.08304 * 9 7 2 11 11 N 1.34783 * 119.99772 * 186.08098 * 9 7 2 12 12 C 1.39069 * 119.99454 * 185.12593 * 11 9 7 13 13 C 1.39271 * 119.93416 * 33.40722 * 12 11 9 14 14 C 1.37613 * 120.06641 * 180.02562 * 13 12 11 15 15 C 1.39841 * 119.93204 * 0.02562 * 14 13 12 16 16 C 1.47456 * 120.06745 * 179.97438 * 15 14 13 17 17 O 1.21514 * 119.99981 * 0.02562 * 16 15 14 18 18 O 1.34747 * 120.00545 * 180.02562 * 16 15 14 19 19 C 1.45193 * 117.00449 * 179.97438 * 18 16 15 20 20 C 1.50707 * 109.47121 * 180.02562 * 19 18 16 21 21 O 1.21281 * 120.00069 * 359.97438 * 20 19 18 22 22 N 1.34779 * 120.00231 * 180.02562 * 20 19 18 23 23 C 1.46492 * 120.00262 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.47345 * 179.97438 * 23 22 20 25 25 H 1.08996 * 110.67645 * 303.49473 * 24 23 22 26 26 C 1.54994 * 110.62198 * 180.52564 * 24 23 22 27 27 C 1.54808 * 102.09302 * 204.47951 * 26 24 23 28 28 C 1.54100 * 104.19108 * 20.88124 * 27 26 24 29 29 O 1.43744 * 107.29169 * 2.03095 * 28 27 26 30 30 C 1.39838 * 119.86549 * 0.26085 * 15 14 13 31 31 C 1.37609 * 119.92816 * 359.46191 * 30 15 14 32 32 H 0.97009 * 119.99786 * 0.02562 * 1 2 3 33 33 H 0.96995 * 119.99883 * 5.12790 * 11 9 7 34 34 H 1.07996 * 119.96896 * 0.02562 * 13 12 11 35 35 H 1.07997 * 120.03279 * 180.02562 * 14 13 12 36 36 H 1.08997 * 109.47013 * 60.00381 * 19 18 16 37 37 H 1.09003 * 109.47495 * 299.99962 * 19 18 16 38 38 H 0.97006 * 119.99516 * 359.97438 * 22 20 19 39 39 H 1.09007 * 109.46923 * 60.00421 * 23 22 20 40 40 H 1.08999 * 109.47334 * 300.00724 * 23 22 20 41 41 H 1.08998 * 110.90368 * 86.27565 * 26 24 23 42 42 H 1.09008 * 110.93230 * 322.69013 * 26 24 23 43 43 H 1.09000 * 110.48479 * 262.20131 * 27 26 24 44 44 H 1.09001 * 110.48834 * 139.55628 * 27 26 24 45 45 H 1.09001 * 109.87954 * 242.61118 * 28 27 26 46 46 H 1.08992 * 109.87983 * 121.45256 * 28 27 26 47 47 H 1.07994 * 120.03712 * 179.74461 * 30 15 14 48 48 H 1.08004 * 119.96600 * 180.27251 * 31 30 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3826 2.1072 -1.3948 5 1 1.4944 2.6200 0.8027 6 1 3.5866 1.4120 0.5921 7 6 2.0069 -1.2134 0.0005 8 1 3.0822 -1.2163 -0.1002 9 6 1.2823 -2.4759 0.1374 10 8 0.0651 -2.4818 0.1395 11 7 1.9621 -3.6331 0.2612 12 6 1.2767 -4.8430 0.2841 13 6 0.1114 -4.9958 -0.4630 14 6 -0.5693 -6.1917 -0.4419 15 6 -0.0899 -7.2538 0.3312 16 6 -0.8172 -8.5363 0.3564 17 8 -1.8338 -8.6712 -0.2953 18 8 -0.3544 -9.5588 1.1022 19 6 -1.1216 -10.7912 1.0796 20 6 -0.4572 -11.8129 1.9662 21 8 0.5628 -11.5302 2.5583 22 7 -0.9959 -13.0411 2.1003 23 6 -0.3497 -14.0343 2.9616 24 6 -1.1582 -15.3330 2.9379 25 1 -2.1896 -15.1498 3.2389 26 6 -0.5041 -16.3999 3.8524 27 6 -1.0211 -17.7204 3.2313 28 6 -1.4250 -17.3302 1.7963 29 8 -1.1106 -15.9377 1.6276 30 6 1.0772 -7.0953 1.0850 31 6 1.7564 -5.8989 1.0553 32 1 -0.4850 0.8401 -0.0004 33 1 2.9292 -3.6220 0.3343 34 1 -0.2586 -4.1751 -1.0595 35 1 -1.4727 -6.3097 -1.0218 36 1 -1.1689 -11.1711 0.0591 37 1 -2.1311 -10.5976 1.4424 38 1 -1.8115 -13.2672 1.6263 39 1 -0.3028 -13.6545 3.9823 40 1 0.6600 -14.2277 2.5992 41 1 -0.8474 -16.2934 4.8814 42 1 0.5833 -16.3446 3.7993 43 1 -1.8851 -18.0893 3.7840 44 1 -0.2296 -18.4696 3.2144 45 1 -2.4944 -17.4882 1.6564 46 1 -0.8630 -17.9267 1.0779 47 1 1.4476 -7.9123 1.6862 48 1 2.6603 -5.7772 1.6338 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003352502.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:54 Heat of formation + Delta-G solvation = -177.781538 kcal Electronic energy + Delta-G solvation = -31945.680855 eV Core-core repulsion = 27158.664800 eV Total energy + Delta-G solvation = -4787.016055 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.68115 -40.21352 -39.48994 -39.00383 -37.00260 -36.20886 -35.18664 -33.64071 -32.77876 -32.57490 -31.29187 -30.54711 -29.83218 -28.60084 -26.53389 -25.71379 -23.51756 -22.46781 -22.25459 -21.99581 -20.97510 -20.78544 -19.87878 -18.15124 -17.83594 -17.52351 -17.30227 -16.76732 -16.74225 -16.25100 -16.22316 -16.02512 -15.57774 -15.56641 -15.06970 -14.48276 -14.39891 -14.13437 -14.01876 -13.76892 -13.59081 -13.20565 -13.00663 -12.94661 -12.80150 -12.64427 -12.60693 -12.40226 -12.01460 -11.94301 -11.91995 -11.85804 -11.36334 -11.34596 -11.14480 -10.85397 -10.80295 -10.65879 -10.45016 -10.40103 -10.30456 -10.12960 -9.54040 -9.49251 -8.98206 -8.59482 -7.88124 -7.29387 -6.44460 -4.91037 1.14045 1.89857 2.10939 2.24728 2.82831 3.03423 3.06131 3.10829 3.14546 3.25618 3.87280 3.92263 4.07831 4.14122 4.25577 4.31071 4.44608 4.45431 4.46333 4.50461 4.71729 4.80607 4.82730 4.93203 5.02170 5.04771 5.15518 5.19501 5.27244 5.29695 5.38565 5.40480 5.44980 5.52110 5.79777 5.90683 5.94281 6.10387 6.24974 6.26864 6.47778 6.63040 6.85349 6.91642 7.00759 7.18129 7.23118 7.60105 7.79768 7.88409 7.90834 8.04271 8.76154 9.05618 10.25571 10.46150 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.036401 B = 0.001183 C = 0.001160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.017043 B =23670.383744 C =24139.417111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.538 3.462 10 O -0.555 6.555 11 N -0.693 5.693 12 C 0.238 3.762 13 C -0.148 4.148 14 C -0.027 4.027 15 C -0.189 4.189 16 C 0.520 3.480 17 O -0.520 6.520 18 O -0.332 6.332 19 C 0.050 3.950 20 C 0.517 3.483 21 O -0.514 6.514 22 N -0.726 5.726 23 C 0.130 3.870 24 C 0.062 3.938 25 H 0.080 0.920 26 C -0.147 4.147 27 C -0.156 4.156 28 C 0.046 3.954 29 O -0.372 6.372 30 C -0.032 4.032 31 C -0.196 4.196 32 H 0.274 0.726 33 H 0.397 0.603 34 H 0.148 0.852 35 H 0.131 0.869 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.406 0.594 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.085 0.915 47 H 0.133 0.867 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.728 -32.157 5.891 32.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.345 3.655 10 O -0.436 6.436 11 N -0.335 5.335 12 C 0.136 3.864 13 C -0.169 4.169 14 C -0.046 4.046 15 C -0.191 4.191 16 C 0.367 3.633 17 O -0.410 6.410 18 O -0.248 6.248 19 C -0.028 4.028 20 C 0.302 3.698 21 O -0.388 6.388 22 N -0.381 5.381 23 C 0.006 3.994 24 C 0.005 3.995 25 H 0.097 0.903 26 C -0.185 4.185 27 C -0.194 4.194 28 C -0.031 4.031 29 O -0.291 6.291 30 C -0.051 4.051 31 C -0.217 4.217 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.166 0.834 35 H 0.149 0.851 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.240 0.760 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.151 0.849 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.245 -31.637 5.928 32.266 hybrid contribution 0.260 0.345 0.034 0.434 sum -1.986 -31.291 5.962 31.916 Atomic orbital electron populations 1.69982 1.07240 1.28048 1.33047 1.25752 0.94705 1.00629 0.92465 0.86248 0.80255 0.80829 0.78908 1.19583 1.20167 1.18637 1.20867 0.94475 0.89108 1.52722 0.90762 1.18475 0.87501 0.82025 0.77476 1.90653 1.13584 1.85505 1.53856 1.44316 1.10110 1.04435 1.74590 1.18318 0.92218 0.86174 0.89720 1.21290 0.96763 0.97566 1.01305 1.21037 0.98027 0.90726 0.94846 1.18706 1.00028 0.91445 1.08949 1.21366 0.82739 0.83737 0.75434 1.90807 1.24982 1.82918 1.42333 1.86628 1.52527 1.20881 1.64727 1.22546 0.95613 0.83474 1.01157 1.20124 0.85012 0.82459 0.82196 1.90768 1.23401 1.78689 1.45977 1.45694 1.30081 1.12263 1.50017 1.21410 0.97006 0.85428 0.95506 1.23431 0.99273 0.92944 0.83899 0.90260 1.23101 1.02059 0.93559 0.99809 1.22940 1.02089 0.98276 0.96090 1.23171 1.00291 0.82745 0.96874 1.88939 1.91609 1.21165 1.27375 1.21106 0.92278 0.96808 0.94918 1.20871 1.03693 0.94122 1.03053 0.91556 0.76857 0.83420 0.85103 0.88061 0.88126 0.75954 0.89663 0.90276 0.89607 0.89798 0.90458 0.90171 0.92174 0.89651 0.84875 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.38 11.85 55.55 0.66 -20.72 16 2 C 0.09 2.26 5.50 -17.36 -0.10 2.17 16 3 Si 0.91 18.97 29.56 -169.99 -5.03 13.94 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.54 -14.12 9.53 -35.68 -0.34 -14.46 16 8 H 0.07 1.77 7.86 -52.48 -0.41 1.35 16 9 C 0.54 14.34 7.46 -13.06 -0.10 14.24 16 10 O -0.55 -16.71 12.70 5.17 0.07 -16.64 16 11 N -0.69 -14.80 5.30 -11.18 -0.06 -14.86 16 12 C 0.24 4.78 6.27 -83.81 -0.53 4.25 16 13 C -0.15 -3.08 8.62 -39.43 -0.34 -3.42 16 14 C -0.03 -0.50 9.58 -39.21 -0.38 -0.88 16 15 C -0.19 -3.25 5.88 -104.94 -0.62 -3.87 16 16 C 0.52 8.50 7.89 34.49 0.27 8.77 16 17 O -0.52 -9.13 16.13 -19.28 -0.31 -9.44 16 18 O -0.33 -4.88 8.99 -47.30 -0.43 -5.30 16 19 C 0.05 0.53 5.95 36.01 0.21 0.75 16 20 C 0.52 5.63 7.91 -10.98 -0.09 5.55 16 21 O -0.51 -7.75 16.50 -14.10 -0.23 -7.98 16 22 N -0.73 -5.35 5.54 -60.29 -0.33 -5.68 16 23 C 0.13 0.85 5.42 -4.05 -0.02 0.83 16 24 C 0.06 0.30 3.38 -25.68 -0.09 0.21 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 26 C -0.15 -0.50 6.59 -24.73 -0.16 -0.67 16 27 C -0.16 -0.45 7.01 -25.20 -0.18 -0.63 16 28 C 0.05 0.20 7.70 37.73 0.29 0.49 16 29 O -0.37 -2.49 11.21 -35.23 -0.39 -2.89 16 30 C -0.03 -0.52 9.60 -39.21 -0.38 -0.89 16 31 C -0.20 -3.29 9.94 -39.43 -0.39 -3.69 16 32 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 33 H 0.40 7.12 8.79 -40.82 -0.36 6.77 16 34 H 0.15 3.46 6.39 -52.49 -0.34 3.12 16 35 H 0.13 2.27 7.64 -52.49 -0.40 1.87 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.41 2.05 8.47 -40.82 -0.35 1.70 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.08 0.31 8.06 -51.92 -0.42 -0.11 16 43 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.13 1.92 7.60 -52.49 -0.40 1.52 16 48 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 415.91 15.07 6.27 6.27 Total: -1.00 -36.23 415.91 -9.16 -45.40 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.45 Total: 9.16 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -2.92 Total: 8.75 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.26 Total: -41.26 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.30 Total: -42.26 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -36.23 -9.16 -45.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003352502.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.387 kcal (2) G-P(sol) polarization free energy of solvation -36.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds