Wall clock time and date at job start Tue Mar 31 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35950 * 117.00091 * 2 1 4 4 C 1.38058 * 120.00011 * 359.97438 * 3 2 1 5 5 C 1.40006 * 119.83846 * 179.97438 * 4 3 2 6 6 C 1.46919 * 120.08372 * 179.97438 * 5 4 3 7 7 C 1.35137 * 120.00027 * 180.02562 * 6 5 4 8 8 C 1.41779 * 120.00218 * 180.02562 * 7 6 5 9 9 O 1.21649 * 119.99565 * 359.97438 * 8 7 6 10 10 O 1.34930 * 120.00393 * 179.97438 * 8 7 6 11 11 C 1.42899 * 117.00455 * 179.97438 * 10 8 7 12 12 C 1.50689 * 109.47557 * 180.02562 * 11 10 8 13 13 O 1.21282 * 119.99973 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00343 * 179.72571 * 12 11 10 15 15 C 1.47025 * 125.64662 * 359.96203 * 14 12 11 16 16 C 1.54311 * 107.27850 * 180.96653 * 15 14 12 17 17 C 1.55162 * 102.85985 * 22.52896 * 16 15 14 18 18 C 1.47429 * 125.65107 * 180.27108 * 14 12 11 19 19 C 1.40053 * 119.83518 * 0.24552 * 5 4 3 20 20 C 1.37630 * 119.99992 * 359.49404 * 19 5 4 21 21 C 1.39068 * 120.16502 * 0.51331 * 20 19 5 22 22 O 1.35603 * 119.92152 * 179.76446 * 21 20 19 23 23 C 1.34756 * 117.00490 * 354.37415 * 22 21 20 24 24 H 1.08000 * 119.99513 * 5.06803 * 23 22 21 25 25 C 1.38706 * 120.00641 * 185.06376 * 23 22 21 26 26 N 1.31519 * 119.99453 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00460 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.46755 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47384 * 120.00095 * 27 25 23 30 30 H 1.48503 * 109.47109 * 240.00310 * 27 25 23 31 31 H 1.09001 * 109.47689 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47353 * 300.00657 * 1 2 3 33 33 H 1.09006 * 109.46732 * 60.00064 * 1 2 3 34 34 H 1.07999 * 120.08528 * 359.95361 * 4 3 2 35 35 H 1.07996 * 119.99533 * 359.97438 * 6 5 4 36 36 H 1.08006 * 120.00363 * 359.97438 * 7 6 5 37 37 H 1.09001 * 109.46954 * 59.99723 * 11 10 8 38 38 H 1.09002 * 109.46889 * 299.99729 * 11 10 8 39 39 H 1.08997 * 109.88425 * 300.51923 * 15 14 12 40 40 H 1.09002 * 109.87736 * 61.67909 * 15 14 12 41 41 H 1.08998 * 110.92757 * 264.11465 * 16 15 14 42 42 H 1.09001 * 110.58757 * 140.78171 * 16 15 14 43 43 H 1.09008 * 111.00460 * 206.22725 * 17 16 15 44 44 H 1.09006 * 111.00439 * 82.37742 * 17 16 15 45 45 H 1.09002 * 110.36720 * 274.67235 * 18 14 12 46 46 H 1.08994 * 110.36559 * 36.88627 * 18 14 12 47 47 H 1.08004 * 120.00266 * 179.74556 * 19 5 4 48 48 H 1.08004 * 119.92161 * 180.24834 * 20 19 5 49 49 H 0.97007 * 119.99587 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3692 -0.0005 5 6 1.9335 3.6148 0.0000 6 6 1.1386 4.8504 -0.0011 7 6 1.7573 6.0519 -0.0011 8 6 0.9903 7.2442 -0.0017 9 8 -0.2248 7.1858 -0.0026 10 8 1.6080 8.4439 -0.0011 11 6 0.7731 9.6036 -0.0023 12 6 1.6325 10.8414 -0.0021 13 8 2.8411 10.7404 -0.0006 14 7 1.0582 12.0606 -0.0087 15 6 -0.3878 12.3266 -0.0172 16 6 -0.5719 13.8584 -0.0474 17 6 0.7755 14.3566 -0.6337 18 6 1.7757 13.3485 -0.0150 19 6 3.3325 3.6801 -0.0041 20 6 4.0755 2.5216 0.0018 21 6 3.4407 1.2843 0.0012 22 8 4.1776 0.1460 0.0022 23 6 5.5133 0.2817 -0.1138 24 1 5.9575 1.2661 -0.1198 25 6 6.3176 -0.8428 -0.2255 26 7 5.7766 -2.0415 -0.2187 27 14 8.1692 -0.6547 -0.3856 28 1 8.5235 0.7872 -0.3678 29 1 8.8366 -1.3431 0.7483 30 1 8.6192 -1.2587 -1.6654 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 0.2158 2.3143 -0.0017 35 1 0.0599 4.7985 -0.0028 36 1 2.8361 6.1038 0.0001 37 1 0.1427 9.5983 0.8869 38 1 0.1449 9.5981 -0.8931 39 1 -0.8419 11.8792 -0.9013 40 1 -0.8451 11.9180 0.8839 41 1 -0.7243 14.2521 0.9575 42 1 -1.4010 14.1320 -0.6999 43 1 0.9923 15.3733 -0.3057 44 1 0.7765 14.2903 -1.7218 45 1 2.0326 13.6446 1.0020 46 1 2.6746 13.2788 -0.6276 47 1 3.8283 4.6396 -0.0079 48 1 5.1543 2.5735 0.0027 49 1 6.3390 -2.8280 -0.2972 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003353425.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:36 Heat of formation + Delta-G solvation = -128.936568 kcal Electronic energy + Delta-G solvation = -32088.366802 eV Core-core repulsion = 27368.894734 eV Total energy + Delta-G solvation = -4719.472067 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.161 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.85389 -40.05202 -39.74130 -37.83382 -37.75224 -36.87677 -36.23260 -33.25401 -32.45140 -32.34021 -30.05072 -29.79797 -29.17740 -28.29426 -26.66938 -25.68882 -24.36587 -23.54674 -21.92592 -21.74876 -21.28680 -19.88819 -19.36458 -18.31370 -18.11892 -17.61327 -17.35099 -17.09465 -16.65404 -16.45011 -15.96346 -15.51410 -15.25799 -15.14061 -14.79780 -14.68133 -14.11973 -14.03363 -13.95357 -13.88950 -13.67576 -13.58497 -13.48581 -13.20649 -12.83755 -12.68438 -12.41055 -12.14856 -11.93349 -11.88311 -11.79205 -11.76065 -11.52148 -11.34839 -11.17150 -11.09679 -10.86264 -10.82847 -10.75890 -10.55574 -10.48238 -10.15254 -9.65365 -9.51674 -9.14696 -8.92860 -8.05375 -6.99897 -6.69770 -4.18858 0.71082 2.07155 2.07844 2.19616 2.31202 3.01731 3.03600 3.09912 3.11939 3.32368 3.78304 3.86679 3.89426 3.97775 4.29701 4.33192 4.39720 4.66541 4.74000 4.79448 4.81237 4.82558 4.93919 5.03196 5.05345 5.15957 5.16165 5.27999 5.30170 5.37997 5.39326 5.50190 5.50475 5.53195 5.56659 5.68553 5.77385 5.79269 5.91466 6.15181 6.22044 6.40060 6.40138 6.50562 6.77966 6.94687 6.95867 7.02758 7.19204 7.41048 7.71230 7.72095 7.89177 8.02068 8.73218 9.40698 10.45459 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.001456 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.951698 B =19230.376767 C =21237.009989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.051 3.949 4 C -0.131 4.131 5 C -0.180 4.180 6 C 0.067 3.933 7 C -0.278 4.278 8 C 0.512 3.488 9 O -0.535 6.535 10 O -0.332 6.332 11 C 0.056 3.944 12 C 0.531 3.469 13 O -0.512 6.512 14 N -0.622 5.622 15 C 0.093 3.907 16 C -0.131 4.131 17 C -0.134 4.134 18 C 0.106 3.894 19 C -0.048 4.048 20 C -0.228 4.228 21 C 0.152 3.848 22 O -0.142 6.142 23 C -0.389 4.389 24 H 0.101 0.899 25 C 0.042 3.958 26 N -0.840 5.840 27 Si 0.947 3.053 28 H -0.263 1.263 29 H -0.273 1.273 30 H -0.273 1.273 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.137 0.863 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.121 0.879 48 H 0.139 0.861 49 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.026 25.745 -0.033 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.006 3.994 4 C -0.151 4.151 5 C -0.181 4.181 6 C 0.048 3.952 7 C -0.297 4.297 8 C 0.363 3.637 9 O -0.429 6.429 10 O -0.248 6.248 11 C -0.022 4.022 12 C 0.319 3.681 13 O -0.386 6.386 14 N -0.359 5.359 15 C -0.030 4.030 16 C -0.169 4.169 17 C -0.172 4.172 18 C -0.016 4.016 19 C -0.066 4.066 20 C -0.247 4.247 21 C 0.094 3.906 22 O -0.042 6.042 23 C -0.464 4.464 24 H 0.118 0.882 25 C -0.166 4.166 26 N -0.471 5.471 27 Si 0.770 3.230 28 H -0.187 1.187 29 H -0.198 1.198 30 H -0.198 1.198 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.138 0.862 48 H 0.157 0.843 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.523 24.849 -0.024 27.827 hybrid contribution 0.372 0.368 -0.049 0.525 sum -12.151 25.217 -0.073 27.992 Atomic orbital electron populations 1.22926 0.80107 1.03137 1.00427 1.86237 1.19630 1.26141 1.89723 1.18012 0.89331 0.84625 1.07447 1.20864 0.98609 0.90827 1.04765 1.18087 0.92841 0.91126 1.16066 1.22380 0.99187 0.90799 0.82852 1.20827 1.01151 0.89086 1.18629 1.20095 0.86829 0.83732 0.73004 1.90838 1.15316 1.87829 1.48910 1.86282 1.39723 1.13849 1.84947 1.22098 0.92456 0.83067 1.04589 1.19824 0.88460 0.83031 0.76801 1.90775 1.14134 1.85831 1.47889 1.48389 1.07788 1.05219 1.74553 1.22165 0.81166 0.97302 1.02357 1.22638 0.98313 0.93548 1.02422 1.22813 0.94357 0.98961 1.01118 1.22259 0.96146 0.81763 1.01397 1.21033 0.92461 0.97673 0.95473 1.20849 1.00862 0.90650 1.12346 1.18919 0.88273 0.87591 0.95804 1.83972 1.19890 1.26106 1.74186 1.21651 0.78233 0.95304 1.51171 0.88191 1.25461 1.01127 0.94097 0.95904 1.70058 1.36784 0.97910 1.42324 0.85551 0.79561 0.79297 0.78553 1.18671 1.19819 1.19815 0.88921 0.93416 0.93411 0.85737 0.85611 0.84492 0.88654 0.88662 0.90893 0.90899 0.90225 0.89672 0.89491 0.90376 0.91152 0.90064 0.86152 0.84317 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.32 10.28 -34.20 -0.35 -6.67 16 3 C 0.05 1.07 6.70 -39.13 -0.26 0.80 16 4 C -0.13 -2.29 8.77 -38.99 -0.34 -2.64 16 5 C -0.18 -3.06 5.87 -105.04 -0.62 -3.68 16 6 C 0.07 1.00 9.41 -37.17 -0.35 0.65 16 7 C -0.28 -4.12 9.33 -39.33 -0.37 -4.48 16 8 C 0.51 7.75 7.70 32.08 0.25 8.00 16 9 O -0.54 -8.67 15.88 -19.38 -0.31 -8.98 16 10 O -0.33 -4.89 9.64 -47.89 -0.46 -5.35 16 11 C 0.06 0.63 5.05 36.00 0.18 0.81 16 12 C 0.53 6.32 7.93 -10.99 -0.09 6.23 16 13 O -0.51 -8.30 16.75 -14.35 -0.24 -8.54 16 14 N -0.62 -5.17 3.33 -170.53 -0.57 -5.74 16 15 C 0.09 0.45 6.48 -3.07 -0.02 0.43 16 16 C -0.13 -0.39 6.95 -24.90 -0.17 -0.56 16 17 C -0.13 -0.49 7.08 -24.58 -0.17 -0.66 16 18 C 0.11 0.71 6.91 -2.53 -0.02 0.69 16 19 C -0.05 -0.85 9.40 -39.12 -0.37 -1.22 16 20 C -0.23 -4.68 9.14 -39.50 -0.36 -5.04 16 21 C 0.15 3.56 6.67 -38.75 -0.26 3.30 16 22 O -0.14 -3.91 9.52 -13.90 -0.13 -4.04 16 23 C -0.39 -10.28 9.48 30.91 0.29 -9.98 16 24 H 0.10 2.40 5.18 -52.49 -0.27 2.13 16 25 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 26 N -0.84 -23.46 13.67 55.48 0.76 -22.70 16 27 Si 0.95 19.36 29.55 -169.99 -5.02 14.34 16 28 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 29 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 30 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 33 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 34 H 0.12 1.79 6.28 -52.49 -0.33 1.46 16 35 H 0.13 1.74 7.45 -52.49 -0.39 1.35 16 36 H 0.14 1.94 6.06 -52.48 -0.32 1.62 16 37 H 0.10 0.90 8.13 -51.93 -0.42 0.48 16 38 H 0.10 0.90 8.13 -51.93 -0.42 0.48 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.09 0.19 8.14 -51.92 -0.42 -0.23 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 47 H 0.12 1.82 6.15 -52.48 -0.32 1.50 16 48 H 0.14 2.78 5.62 -52.48 -0.29 2.49 16 49 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 417.92 15.07 6.30 6.30 Total: -1.00 -34.51 417.92 -8.31 -42.82 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.50 Total: 3.50 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.78 Total: -4.94 kcal Atomic # 7 Polarization: -28.63 SS G_CDS: 0.19 Total: -28.44 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.49 Total: -33.58 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.51 -8.31 -42.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003353425.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.114 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds