Wall clock time and date at job start Tue Mar 31 2020 05:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99616 * 2 1 4 4 H 1.48496 * 109.46986 * 239.99786 * 3 2 1 5 5 H 1.48495 * 109.47123 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47000 * 119.99997 * 3 2 1 7 7 C 1.37869 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00044 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00141 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47047 * 179.97438 * 9 7 2 11 11 S 1.81002 * 109.47145 * 180.02562 * 10 9 7 12 12 C 1.76194 * 100.00065 * 179.97438 * 11 10 9 13 13 N 1.31414 * 126.38438 * 0.04457 * 12 11 10 14 14 N 1.28513 * 110.08796 * 179.97438 * 13 12 11 15 15 C 1.31269 * 109.96159 * 359.97438 * 14 13 12 16 16 C 1.47817 * 126.46394 * 180.26225 * 15 14 13 17 17 C 1.39574 * 120.15600 * 131.32323 * 16 15 14 18 18 C 1.37946 * 119.87776 * 179.70038 * 17 16 15 19 19 C 1.38389 * 120.19336 * 0.57353 * 18 17 16 20 20 C 1.38292 * 120.32113 * 359.72119 * 19 18 17 21 21 C 1.38224 * 120.11916 * 359.97438 * 20 19 18 22 22 F 1.35096 * 120.10071 * 179.97438 * 21 20 19 23 23 N 1.36603 * 126.38488 * 179.97438 * 12 11 10 24 24 C 1.46503 * 127.17354 * 0.02562 * 23 12 11 25 25 C 1.53004 * 109.46936 * 59.97523 * 24 23 12 26 26 C 1.53007 * 109.46856 * 180.02562 * 25 24 23 27 27 C 1.53002 * 109.47103 * 60.00178 * 26 25 24 28 28 C 1.53005 * 109.47116 * 300.00056 * 27 26 25 29 29 C 1.52998 * 109.47257 * 59.99797 * 28 27 26 30 30 H 0.96994 * 120.00238 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46792 * 60.00054 * 9 7 2 32 32 H 1.08999 * 109.46770 * 299.99884 * 9 7 2 33 33 H 1.09002 * 109.47292 * 59.99782 * 10 9 7 34 34 H 1.09001 * 109.47074 * 300.00119 * 10 9 7 35 35 H 1.08003 * 120.05942 * 359.97438 * 17 16 15 36 36 H 1.07997 * 119.90249 * 180.27144 * 18 17 16 37 37 H 1.07998 * 119.84127 * 179.74573 * 19 18 17 38 38 H 1.08003 * 119.94090 * 180.02562 * 20 19 18 39 39 H 1.08990 * 109.47337 * 179.97438 * 24 23 12 40 40 H 1.08997 * 109.47482 * 299.99866 * 25 24 23 41 41 H 1.09001 * 109.47225 * 60.00415 * 25 24 23 42 42 H 1.08997 * 109.46860 * 300.00118 * 26 25 24 43 43 H 1.09002 * 109.46998 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.46770 * 180.02562 * 27 26 25 45 45 H 1.09004 * 109.47179 * 59.99896 * 27 26 25 46 46 H 1.08997 * 109.47161 * 300.00253 * 28 27 26 47 47 H 1.08993 * 109.46896 * 179.97438 * 28 27 26 48 48 H 1.08994 * 109.47703 * 179.97438 * 29 28 27 49 49 H 1.09005 * 109.46989 * 59.99634 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3405 -5.2296 -0.0002 12 6 2.6903 -6.3621 -0.0009 13 7 3.9675 -6.0526 0.0000 14 7 4.6807 -7.1217 -0.0003 15 6 3.9029 -8.1792 -0.0009 16 6 4.3402 -9.5912 0.0040 17 6 3.7828 -10.4947 0.9103 18 6 4.1906 -11.8125 0.9057 19 6 5.1589 -12.2383 0.0134 20 6 5.7210 -11.3488 -0.8839 21 6 5.3176 -10.0267 -0.8950 22 9 5.8673 -9.1579 -1.7714 23 7 2.6042 -7.7254 -0.0011 24 6 1.3834 -8.5353 -0.0013 25 6 0.5596 -8.2156 -1.2504 26 6 -0.7157 -9.0610 -1.2503 27 6 -1.5390 -8.7419 -0.0008 28 6 -0.7151 -9.0616 1.2483 29 6 0.5601 -8.2162 1.2482 30 1 -0.4850 0.8400 -0.0004 31 1 0.6249 -2.5571 -0.8896 32 1 0.6241 -2.5567 0.8903 33 1 2.8721 -3.6042 0.8905 34 1 2.8721 -3.6042 -0.8894 35 1 3.0305 -10.1636 1.6109 36 1 3.7564 -12.5128 1.6038 37 1 5.4768 -13.2704 0.0176 38 1 6.4759 -11.6878 -1.5779 39 1 1.6487 -9.5924 -0.0019 40 1 0.2942 -7.1584 -1.2498 41 1 1.1463 -8.4425 -2.1405 42 1 -0.4507 -10.1182 -1.2506 43 1 -1.3024 -8.8336 -2.1403 44 1 -2.4473 -9.3445 -0.0005 45 1 -1.8040 -7.6846 -0.0004 46 1 -0.4501 -10.1188 1.2479 47 1 -1.3015 -8.8338 2.1383 48 1 1.1469 -8.4435 2.1381 49 1 0.2951 -7.1589 1.2484 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003354923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:45 Heat of formation + Delta-G solvation = 27.052477 kcal Electronic energy + Delta-G solvation = -31836.811476 eV Core-core repulsion = 27611.522013 eV Total energy + Delta-G solvation = -4225.289463 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.148 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.08032 -42.78554 -39.25859 -38.87252 -34.49491 -33.72642 -32.76600 -31.18444 -31.06119 -30.92666 -29.70684 -29.33780 -25.35893 -24.48257 -23.63123 -23.16415 -22.96738 -22.15567 -21.45967 -20.65314 -19.82857 -18.22936 -17.64147 -16.77684 -16.59297 -16.43501 -16.25390 -15.77881 -15.66201 -15.40513 -14.80930 -14.58867 -14.50357 -14.40578 -14.27253 -13.73607 -13.68530 -13.48049 -13.46706 -13.07523 -12.77923 -12.59449 -12.39878 -12.20403 -12.04100 -11.69183 -11.55358 -11.52495 -11.42757 -11.03022 -10.94672 -10.89935 -10.74685 -10.71542 -10.61601 -10.41443 -10.04193 -9.99467 -9.90359 -9.67580 -9.34968 -9.15347 -8.97506 -8.43074 -7.28943 -6.07851 -4.11639 0.42895 0.73382 1.38297 1.73367 2.46634 2.73234 2.83850 3.17254 3.33261 3.36683 3.40938 3.79844 3.89611 4.13368 4.28580 4.32038 4.42933 4.44288 4.53323 4.66298 4.70998 4.79808 4.83279 4.86457 5.06071 5.13811 5.16750 5.22426 5.28463 5.28771 5.39933 5.51538 5.55771 5.64819 5.66301 5.72454 5.72921 5.85125 5.86614 5.88999 5.91855 5.92808 6.00678 6.02215 6.17591 6.21843 6.36147 6.69575 6.70701 7.47363 7.53909 7.88180 8.24762 8.71057 8.92704 9.52652 11.03036 Molecular weight = 375.15amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.002556 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.831232 B =10950.635891 C =12929.060836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.061 0.939 9 C 0.037 3.963 10 C -0.081 4.081 11 S -0.024 6.024 12 C 0.182 3.818 13 N -0.290 5.290 14 N -0.256 5.256 15 C 0.195 3.805 16 C -0.042 4.042 17 C -0.074 4.074 18 C -0.129 4.129 19 C -0.079 4.079 20 C -0.154 4.154 21 C 0.139 3.861 22 F -0.121 7.121 23 N -0.454 5.454 24 C 0.137 3.863 25 C -0.139 4.139 26 C -0.111 4.111 27 C -0.126 4.126 28 C -0.111 4.111 29 C -0.140 4.140 30 H 0.263 0.737 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.410 -30.618 0.809 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.002 4.002 10 C -0.229 4.229 11 S 0.207 5.793 12 C -0.191 4.191 13 N -0.134 5.134 14 N -0.097 5.097 15 C -0.071 4.071 16 C -0.045 4.045 17 C -0.094 4.094 18 C -0.147 4.147 19 C -0.098 4.098 20 C -0.173 4.173 21 C 0.118 3.882 22 F -0.100 7.100 23 N -0.148 5.148 24 C 0.035 3.965 25 C -0.178 4.178 26 C -0.149 4.149 27 C -0.164 4.164 28 C -0.149 4.149 29 C -0.178 4.178 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.349 -29.780 0.770 29.792 hybrid contribution 0.885 0.560 -0.159 1.059 sum 1.234 -29.220 0.611 29.252 Atomic orbital electron populations 1.69949 1.06061 1.27060 1.50100 1.24994 0.94920 0.99329 0.94937 0.86550 0.79505 0.82527 0.78855 1.20056 1.21208 1.20051 1.21025 0.93236 0.89817 1.51713 0.92114 1.18963 0.93336 0.89453 0.98457 1.24076 1.02067 0.90973 1.05827 1.85577 1.03360 0.98831 1.91496 1.27185 1.00565 0.85753 1.05619 1.74806 0.98322 1.19703 1.20602 1.74382 1.25676 0.93823 1.15835 1.22467 0.80863 0.94892 1.08926 1.17483 0.99598 0.88444 0.98991 1.21158 0.98989 0.92782 0.96469 1.21110 0.98319 0.95374 0.99916 1.21161 0.95067 0.99775 0.93774 1.21147 1.02799 0.91249 1.02104 1.17681 0.93833 0.87616 0.89056 1.91585 1.83477 1.68850 1.66042 1.46730 1.07025 1.05405 1.55594 1.21687 0.81948 0.94953 0.97953 1.22045 0.96585 1.03186 0.95952 1.21459 0.95289 0.99304 0.98835 1.21624 0.98139 1.02678 0.93934 1.21461 0.95293 0.99276 0.98860 1.22064 0.96614 1.03336 0.95796 0.92715 0.95465 0.95454 0.89654 0.89664 0.84931 0.84633 0.84510 0.83984 0.87876 0.89105 0.91232 0.91878 0.90864 0.91441 0.90952 0.91844 0.90829 0.91218 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.04 0.95 4.98 -27.88 -0.14 0.81 16 10 C -0.08 -1.75 5.17 37.16 0.19 -1.56 16 11 S -0.02 -0.42 18.10 -107.50 -1.95 -2.36 16 12 C 0.18 3.26 7.57 -88.17 -0.67 2.60 16 13 N -0.29 -5.97 11.59 30.71 0.36 -5.62 16 14 N -0.26 -5.00 12.07 32.59 0.39 -4.60 16 15 C 0.20 3.08 7.13 -153.77 -1.10 1.98 16 16 C -0.04 -0.50 5.56 -104.91 -0.58 -1.09 16 17 C -0.07 -0.63 8.31 -39.19 -0.33 -0.96 16 18 C -0.13 -0.78 10.03 -39.63 -0.40 -1.17 16 19 C -0.08 -0.46 10.04 -39.51 -0.40 -0.85 16 20 C -0.15 -1.22 10.01 -39.57 -0.40 -1.62 16 21 C 0.14 1.63 7.28 -39.02 -0.28 1.35 16 22 F -0.12 -1.76 16.70 2.25 0.04 -1.72 16 23 N -0.45 -6.68 2.68 -107.01 -0.29 -6.96 16 24 C 0.14 1.47 2.45 -67.93 -0.17 1.30 16 25 C -0.14 -1.46 5.25 -26.73 -0.14 -1.60 16 26 C -0.11 -0.85 5.92 -26.73 -0.16 -1.01 16 27 C -0.13 -0.94 5.92 -26.73 -0.16 -1.10 16 28 C -0.11 -0.80 5.92 -26.73 -0.16 -0.95 16 29 C -0.14 -1.37 5.25 -26.73 -0.14 -1.51 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.88 8.14 -51.92 -0.42 1.45 16 34 H 0.08 1.89 8.14 -51.91 -0.42 1.46 16 35 H 0.13 0.99 7.63 -52.48 -0.40 0.59 16 36 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 37 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 38 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 39 H 0.10 0.91 6.12 -51.93 -0.32 0.59 16 40 H 0.09 1.13 6.03 -51.93 -0.31 0.82 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.09 1.09 6.02 -51.93 -0.31 0.78 16 LS Contribution 410.35 15.07 6.18 6.18 Total: -1.00 -33.23 410.35 -12.20 -45.43 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -7.23 Total: -2.82 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -5.43 Total: -18.59 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 1.20 Total: -42.71 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -1.95 Total: -2.36 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.23 -12.20 -45.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003354923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.480 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds