Wall clock time and date at job start Tue Mar 31 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34246 * 125.14509 * 124.99738 * 10 9 7 12 12 C 1.38267 * 107.82677 * 179.97438 * 11 10 9 13 13 C 1.46734 * 126.84014 * 180.02562 * 12 11 10 14 14 C 1.35266 * 119.99577 * 359.97438 * 13 12 11 15 15 C 1.41534 * 119.99643 * 180.02562 * 14 13 12 16 16 O 1.21674 * 120.00145 * 359.97438 * 15 14 13 17 17 O 1.34956 * 119.99678 * 179.97438 * 15 14 13 18 18 C 1.46736 * 106.32409 * 359.97438 * 12 11 10 19 19 C 1.48249 * 126.51147 * 180.02562 * 18 12 11 20 20 C 1.39419 * 120.11495 * 324.72986 * 19 18 12 21 21 C 1.37983 * 119.87851 * 179.69679 * 20 19 18 22 22 C 1.38432 * 120.11563 * 0.59553 * 21 20 19 23 23 Br 1.89095 * 119.87905 * 179.69979 * 22 21 20 24 24 C 1.38430 * 120.23700 * 359.67733 * 22 21 20 25 25 C 1.37974 * 120.11763 * 0.02562 * 24 22 21 26 26 N 1.31369 * 106.98185 * 359.76585 * 18 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.07993 * 126.08821 * 359.97438 * 11 10 9 31 31 H 1.07995 * 120.00494 * 179.97438 * 13 12 11 32 32 H 1.07998 * 120.00329 * 359.97438 * 14 13 12 33 33 H 0.96701 * 113.99857 * 179.97438 * 17 15 14 34 34 H 1.07998 * 120.05748 * 359.97236 * 20 19 18 35 35 H 1.07996 * 119.94406 * 180.29727 * 21 20 19 36 36 H 1.07997 * 119.93627 * 179.97438 * 24 22 21 37 37 H 1.08001 * 120.06310 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2300 -4.6112 0.8850 12 6 3.2656 -5.4606 0.5418 13 6 3.6662 -6.6869 1.2410 14 6 2.9944 -7.0860 2.3451 15 6 3.3811 -8.2685 3.0199 16 8 4.3175 -8.9263 2.6065 17 8 2.7112 -8.6664 4.1218 18 6 3.8836 -4.8923 -0.6616 19 6 5.0376 -5.4489 -1.4074 20 6 6.0693 -6.0900 -0.7230 21 6 7.1381 -6.6117 -1.4225 22 6 7.1931 -6.4886 -2.8002 23 35 8.6651 -7.1987 -3.7514 24 6 6.1742 -5.8480 -3.4841 25 6 5.0979 -5.3281 -2.7950 26 7 3.2163 -3.7996 -0.9561 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5619 -4.7299 1.7251 31 1 4.4973 -7.2708 0.8742 32 1 2.1635 -6.5019 2.7123 33 1 3.0476 -9.4845 4.5126 34 1 6.0298 -6.1819 0.3524 35 1 7.9355 -7.1127 -0.8938 36 1 6.2223 -5.7544 -4.5590 37 1 4.3033 -4.8288 -3.3295 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003355977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:03 Heat of formation + Delta-G solvation = 13.331719 kcal Electronic energy + Delta-G solvation = -24083.515780 eV Core-core repulsion = 20259.402308 eV Total energy + Delta-G solvation = -3824.113473 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.021 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84954 -40.10936 -39.11693 -36.15681 -34.72477 -33.73301 -33.09128 -31.47390 -31.23520 -29.47614 -29.19270 -26.87980 -24.62665 -23.74635 -22.98270 -22.18688 -21.09634 -19.92937 -18.89928 -18.25030 -17.37833 -17.07115 -16.50520 -15.84911 -15.53915 -15.39162 -15.23658 -14.69794 -14.04712 -13.92392 -13.87976 -13.59720 -13.55444 -13.41592 -12.91480 -12.58761 -12.26965 -11.90975 -11.61186 -11.54105 -11.35624 -11.26218 -11.12247 -10.88939 -10.67441 -10.47028 -10.42284 -10.28885 -10.25486 -9.72266 -9.18684 -9.02613 -8.74371 -8.48540 -7.69689 -6.76172 -4.52858 0.56029 0.91411 1.17885 1.44023 2.32427 2.69171 2.88850 3.28578 3.30343 3.34896 3.40270 3.49244 3.65964 4.25684 4.36009 4.59996 4.72403 4.74593 4.98798 5.11169 5.16634 5.20765 5.23261 5.37601 5.50138 5.54479 5.69107 5.82690 5.92168 6.03758 6.19682 6.28372 6.36586 6.37911 6.42571 6.49754 6.60637 6.74034 7.26107 7.40402 7.92386 8.00342 8.10301 8.40667 9.15447 10.61709 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.006240 B = 0.002939 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4486.358067 B = 9524.646494 C =13496.002668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.028 3.972 3 Si 1.076 2.924 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.615 4.615 8 H 0.065 0.935 9 C 0.240 3.760 10 N -0.306 5.306 11 C 0.105 3.895 12 C -0.263 4.263 13 C 0.091 3.909 14 C -0.274 4.274 15 C 0.520 3.480 16 O -0.540 6.540 17 O -0.512 6.512 18 C 0.108 3.892 19 C 0.018 3.982 20 C -0.095 4.095 21 C -0.089 4.089 22 C -0.089 4.089 23 Br -0.057 7.057 24 C -0.090 4.090 25 C -0.085 4.085 26 N -0.249 5.249 27 H 0.267 0.733 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.182 0.818 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.403 0.597 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.833 -16.230 -1.964 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.902 3.098 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.653 4.653 8 H 0.084 0.916 9 C 0.123 3.877 10 N -0.081 5.081 11 C -0.048 4.048 12 C -0.275 4.275 13 C 0.070 3.930 14 C -0.294 4.294 15 C 0.370 3.630 16 O -0.434 6.434 17 O -0.321 6.321 18 C -0.059 4.059 19 C 0.015 3.985 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.168 4.168 23 Br 0.028 6.972 24 C -0.110 4.110 25 C -0.106 4.106 26 N -0.069 5.069 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.199 0.801 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.259 0.741 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.966 -13.434 -3.425 18.313 hybrid contribution -0.089 -2.610 1.153 2.855 sum 11.877 -16.044 -2.272 20.090 Atomic orbital electron populations 1.70874 1.06796 1.30492 1.45196 1.25943 0.96226 1.02863 0.92761 0.83424 0.74883 0.74447 0.77038 1.20359 1.21087 1.20952 1.22034 0.95417 0.90109 1.57736 0.91627 1.20010 0.86313 0.82709 0.98696 1.49041 1.23075 1.18725 1.17252 1.23162 0.98012 0.88513 0.95140 1.19984 1.04163 1.01315 1.02039 1.21769 0.92890 0.89478 0.88828 1.20764 1.07939 0.99452 1.01293 1.19592 0.79590 0.85500 0.78311 1.90919 1.29327 1.56652 1.66476 1.85100 1.59303 1.45803 1.41923 1.21836 0.95922 0.93696 0.94472 1.17877 0.91503 0.96739 0.92367 1.21259 0.92576 0.97151 1.00519 1.21003 0.98649 0.99261 0.91944 1.21844 0.95334 1.04778 0.94894 1.96698 1.40838 1.84571 1.75052 1.21035 0.92577 0.96975 1.00379 1.21303 0.98148 0.98047 0.93055 1.77453 1.00503 1.16106 1.12832 0.92227 0.93187 0.94009 0.80139 0.84725 0.84999 0.74099 0.84494 0.84579 0.84672 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.74 13.65 55.43 0.76 -23.99 16 2 C 0.03 0.73 5.46 -17.82 -0.10 0.63 16 3 Si 1.08 23.68 29.90 -169.99 -5.08 18.59 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.62 -16.02 9.21 -34.44 -0.32 -16.34 16 8 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.24 5.43 5.52 -5.19 -0.03 5.41 16 10 N -0.31 -6.18 3.62 -61.93 -0.22 -6.40 16 11 C 0.10 1.71 10.79 -16.49 -0.18 1.53 16 12 C -0.26 -4.08 6.23 -103.02 -0.64 -4.73 16 13 C 0.09 1.21 8.76 -37.21 -0.33 0.88 16 14 C -0.27 -3.45 9.47 -39.39 -0.37 -3.82 16 15 C 0.52 6.65 8.04 31.99 0.26 6.91 16 16 O -0.54 -8.17 16.84 -19.40 -0.33 -8.49 16 17 O -0.51 -5.22 13.54 -41.20 -0.56 -5.78 16 18 C 0.11 1.84 6.94 -80.52 -0.56 1.28 16 19 C 0.02 0.25 5.84 -104.90 -0.61 -0.36 16 20 C -0.09 -1.17 8.68 -39.24 -0.34 -1.51 16 21 C -0.09 -0.98 9.77 -39.60 -0.39 -1.37 16 22 C -0.09 -1.00 6.23 -39.44 -0.25 -1.25 16 23 Br -0.06 -0.57 33.69 -68.01 -2.29 -2.86 16 24 C -0.09 -1.03 9.77 -39.61 -0.39 -1.42 16 25 C -0.09 -1.13 9.76 -39.24 -0.38 -1.52 16 26 N -0.25 -5.07 12.27 34.60 0.42 -4.65 16 27 H 0.27 7.13 7.22 -40.82 -0.29 6.84 16 28 H 0.05 1.08 7.92 -51.93 -0.41 0.67 16 29 H 0.04 0.99 8.00 -51.93 -0.42 0.57 16 30 H 0.18 2.30 7.30 -52.49 -0.38 1.91 16 31 H 0.14 1.72 5.61 -52.49 -0.29 1.43 16 32 H 0.13 1.49 6.94 -52.49 -0.36 1.13 16 33 H 0.40 2.32 8.98 45.56 0.41 2.73 16 34 H 0.14 1.56 6.41 -52.49 -0.34 1.22 16 35 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -30.77 355.67 -9.13 -39.89 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -2.56 Total: 3.99 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -4.62 Total: -15.67 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.96 Total: -35.04 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.88 Total: -14.27 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.08 Total: 18.59 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.29 Total: -2.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.77 -9.13 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003355977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.226 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds