Wall clock time and date at job start Tue Mar 31 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34246 * 125.14509 * 124.99738 * 10 9 7 12 12 C 1.38267 * 107.82677 * 179.97438 * 11 10 9 13 13 C 1.46734 * 126.84014 * 180.02562 * 12 11 10 14 14 C 1.35266 * 119.99577 * 359.97438 * 13 12 11 15 15 C 1.41534 * 119.99643 * 180.02562 * 14 13 12 16 16 O 1.21674 * 120.00145 * 359.97438 * 15 14 13 17 17 O 1.34956 * 119.99678 * 179.97438 * 15 14 13 18 18 C 1.46736 * 106.32409 * 359.97438 * 12 11 10 19 19 C 1.48249 * 126.51147 * 180.02562 * 18 12 11 20 20 C 1.39419 * 120.11495 * 324.72986 * 19 18 12 21 21 C 1.37983 * 119.87851 * 179.69679 * 20 19 18 22 22 C 1.38432 * 120.11563 * 0.59553 * 21 20 19 23 23 Br 1.89095 * 119.87905 * 179.69979 * 22 21 20 24 24 C 1.38430 * 120.23700 * 359.67733 * 22 21 20 25 25 C 1.37974 * 120.11763 * 0.02562 * 24 22 21 26 26 N 1.31369 * 106.98185 * 359.76585 * 18 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.07993 * 126.08821 * 359.97438 * 11 10 9 31 31 H 1.07995 * 120.00494 * 179.97438 * 13 12 11 32 32 H 1.07998 * 120.00329 * 359.97438 * 14 13 12 33 33 H 0.96701 * 113.99857 * 179.97438 * 17 15 14 34 34 H 1.07998 * 120.05748 * 359.97236 * 20 19 18 35 35 H 1.07996 * 119.94406 * 180.29727 * 21 20 19 36 36 H 1.07997 * 119.93627 * 179.97438 * 24 22 21 37 37 H 1.08001 * 120.06310 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2300 -4.6112 0.8850 12 6 3.2656 -5.4606 0.5418 13 6 3.6662 -6.6869 1.2410 14 6 2.9944 -7.0860 2.3451 15 6 3.3811 -8.2685 3.0199 16 8 4.3175 -8.9263 2.6065 17 8 2.7112 -8.6664 4.1218 18 6 3.8836 -4.8923 -0.6616 19 6 5.0376 -5.4489 -1.4074 20 6 6.0693 -6.0900 -0.7230 21 6 7.1381 -6.6117 -1.4225 22 6 7.1931 -6.4886 -2.8002 23 35 8.6651 -7.1987 -3.7514 24 6 6.1742 -5.8480 -3.4841 25 6 5.0979 -5.3281 -2.7950 26 7 3.2163 -3.7996 -0.9561 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5619 -4.7299 1.7251 31 1 4.4973 -7.2708 0.8742 32 1 2.1635 -6.5019 2.7123 33 1 3.0476 -9.4845 4.5126 34 1 6.0298 -6.1819 0.3524 35 1 7.9355 -7.1127 -0.8938 36 1 6.2223 -5.7544 -4.5590 37 1 4.3033 -4.8288 -3.3295 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003355977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:02 Heat of formation + Delta-G solvation = -3.494251 kcal Electronic energy + Delta-G solvation = -24084.245409 eV Core-core repulsion = 20259.402308 eV Total energy + Delta-G solvation = -3824.843101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.021 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14942 -41.11273 -40.11323 -37.10083 -36.30806 -35.07795 -34.35621 -32.71616 -32.19092 -30.75092 -30.31306 -28.38456 -25.93226 -25.26118 -23.97446 -23.44444 -22.26278 -21.13572 -20.03024 -19.42822 -18.99771 -18.22570 -17.56585 -17.11380 -16.56715 -16.44161 -16.34591 -16.03651 -15.68104 -15.20704 -15.10106 -14.73211 -14.60181 -14.39897 -14.17581 -14.00042 -13.86952 -13.34356 -12.92337 -12.64568 -12.53686 -12.45086 -12.31347 -12.09706 -11.98239 -11.81307 -11.62749 -11.50272 -11.29623 -11.21919 -10.74610 -10.58018 -10.12444 -9.60462 -9.01187 -8.77666 -6.60467 -0.48049 -0.14402 0.23804 0.55031 1.03320 1.47660 1.50832 1.55376 1.57739 1.77344 2.30715 2.45072 2.50016 2.61276 2.97579 3.21004 3.44832 3.72784 3.84696 3.99924 4.06238 4.18459 4.21920 4.32132 4.39448 4.52632 4.55984 4.57395 4.71258 4.89268 4.94388 5.09465 5.26626 5.31026 5.36919 5.45919 5.55425 5.61770 5.65311 5.75628 6.11336 6.34245 6.65196 7.04111 7.14047 8.55874 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.006240 B = 0.002939 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4486.358067 B = 9524.646494 C =13496.002668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 1.115 2.885 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.624 4.624 8 H 0.046 0.954 9 C 0.252 3.748 10 N -0.334 5.334 11 C 0.101 3.899 12 C -0.255 4.255 13 C 0.084 3.916 14 C -0.259 4.259 15 C 0.525 3.475 16 O -0.564 6.564 17 O -0.505 6.505 18 C 0.113 3.887 19 C -0.008 4.008 20 C -0.092 4.092 21 C -0.085 4.085 22 C -0.090 4.090 23 Br -0.039 7.039 24 C -0.087 4.087 25 C -0.095 4.095 26 N -0.302 5.302 27 H 0.263 0.737 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.214 0.786 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.424 0.576 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.327 -17.788 -0.990 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.214 4.214 3 Si 0.936 3.064 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.203 1.203 7 C -0.662 4.662 8 H 0.064 0.936 9 C 0.133 3.867 10 N -0.109 5.109 11 C -0.050 4.050 12 C -0.267 4.267 13 C 0.064 3.936 14 C -0.279 4.279 15 C 0.375 3.625 16 O -0.460 6.460 17 O -0.317 6.317 18 C -0.055 4.055 19 C -0.010 4.010 20 C -0.112 4.112 21 C -0.104 4.104 22 C -0.170 4.170 23 Br 0.047 6.953 24 C -0.107 4.107 25 C -0.115 4.115 26 N -0.121 5.121 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.040 0.960 30 H 0.231 0.769 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.283 0.717 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.172 0.828 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.464 -15.046 -2.423 20.335 hybrid contribution -0.450 -2.368 0.886 2.568 sum 13.013 -17.414 -1.537 21.793 Atomic orbital electron populations 1.70955 1.07442 1.30335 1.46986 1.27145 0.96377 1.05879 0.92035 0.82929 0.74222 0.71427 0.77811 1.20058 1.19553 1.20272 1.22237 0.94700 0.92013 1.57239 0.93564 1.19588 0.86431 0.82607 0.98066 1.48702 1.23790 1.19499 1.18933 1.23754 0.98595 0.87421 0.95183 1.20166 1.03386 1.01662 1.01460 1.21674 0.93708 0.88861 0.89330 1.20973 1.07445 0.99135 1.00353 1.19558 0.79140 0.85182 0.78619 1.90919 1.30412 1.57381 1.67259 1.85056 1.58712 1.47085 1.40826 1.22338 0.95764 0.92633 0.94736 1.17997 0.91751 0.98415 0.92844 1.21352 0.92260 0.96621 1.00997 1.21269 0.98608 0.98550 0.91992 1.22046 0.95616 1.04074 0.95280 1.96724 1.39711 1.84214 1.74698 1.21202 0.91895 0.96292 1.01277 1.21299 0.98734 0.98601 0.92909 1.77365 1.01992 1.18347 1.14444 0.92762 0.92136 0.95964 0.76912 0.84140 0.83452 0.71677 0.83619 0.82229 0.82847 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.60 13.65 21.45 0.29 -51.30 16 2 C -0.01 -0.74 5.46 84.65 0.46 -0.28 16 3 Si 1.11 47.97 29.90 68.60 2.05 50.03 16 4 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.62 -33.45 9.21 25.60 0.24 -33.22 16 8 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 9 C 0.25 11.82 5.52 85.64 0.47 12.29 16 10 N -0.33 -13.85 3.62 -349.84 -1.27 -15.11 16 11 C 0.10 3.25 10.79 84.33 0.91 4.16 16 12 C -0.25 -7.77 6.23 -18.83 -0.12 -7.89 16 13 C 0.08 2.10 8.76 23.81 0.21 2.31 16 14 C -0.26 -5.85 9.47 22.40 0.21 -5.63 16 15 C 0.52 12.00 8.04 68.63 0.55 12.55 16 16 O -0.56 -15.76 16.84 19.26 0.32 -15.44 16 17 O -0.51 -8.69 13.54 -58.73 -0.80 -9.49 16 18 C 0.11 3.91 6.94 44.10 0.31 4.22 16 19 C -0.01 -0.22 5.84 -20.05 -0.12 -0.34 16 20 C -0.09 -2.17 8.68 22.49 0.20 -1.97 16 21 C -0.08 -1.70 9.77 22.26 0.22 -1.49 16 22 C -0.09 -1.86 6.23 22.36 0.14 -1.73 16 23 Br -0.04 -0.69 33.69 -20.37 -0.69 -1.38 16 24 C -0.09 -1.91 9.77 22.25 0.22 -1.69 16 25 C -0.10 -2.56 9.76 22.49 0.22 -2.34 16 26 N -0.30 -12.80 12.27 -44.46 -0.55 -13.34 16 27 H 0.26 14.40 7.22 -92.71 -0.67 13.73 16 28 H 0.06 2.67 7.92 -2.39 -0.02 2.66 16 29 H 0.02 1.12 8.00 -2.39 -0.02 1.10 16 30 H 0.21 5.06 7.30 -2.91 -0.02 5.04 16 31 H 0.14 3.36 5.61 -2.91 -0.02 3.35 16 32 H 0.15 2.86 6.94 -2.91 -0.02 2.84 16 33 H 0.42 3.52 8.98 -74.06 -0.67 2.85 16 34 H 0.15 3.10 6.41 -2.91 -0.02 3.09 16 35 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -67.19 355.67 4.07 -63.12 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.58 Total: 13.96 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 4.11 Total: -21.05 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -1.52 Total: -79.76 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.47 Total: -24.93 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.05 Total: 50.03 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.69 Total: -1.38 kcal Total: -67.19 4.07 -63.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003355977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.629 kcal (2) G-P(sol) polarization free energy of solvation -67.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds