Wall clock time and date at job start Tue Mar 31 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30002 * 127.33489 * 2 1 4 4 O 1.20659 * 112.31873 * 180.32483 * 3 2 1 5 5 C 1.33472 * 113.17230 * 359.68801 * 4 3 2 6 6 C 1.50698 * 126.83176 * 179.97438 * 5 4 3 7 7 C 1.37436 * 106.33311 * 0.02562 * 5 4 3 8 8 C 1.47249 * 128.57695 * 180.02562 * 7 5 4 9 9 O 1.21529 * 120.00383 * 89.99107 * 8 7 5 10 10 O 1.34770 * 119.99635 * 269.99225 * 8 7 5 11 11 C 1.45194 * 116.99826 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47026 * 180.02562 * 11 10 8 13 13 O 1.21291 * 119.99949 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00099 * 180.02562 * 12 11 10 15 15 C 1.39938 * 120.00173 * 185.73862 * 14 12 11 16 16 C 1.38684 * 120.11224 * 24.75033 * 15 14 12 17 17 C 1.38220 * 120.01894 * 180.02562 * 16 15 14 18 18 C 1.38390 * 120.24981 * 359.95655 * 17 16 15 19 19 C 1.38085 * 120.23045 * 0.02562 * 18 17 16 20 20 C 1.38994 * 119.97692 * 0.02643 * 19 18 17 21 21 S 1.76195 * 120.12502 * 179.97438 * 20 19 18 22 22 C 1.76203 * 100.00020 * 5.61963 * 21 20 19 23 23 H 1.07993 * 119.99677 * 354.96047 * 22 21 20 24 24 C 1.38687 * 119.99706 * 174.96929 * 22 21 20 25 25 N 1.31653 * 119.99452 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00514 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46999 * 90.00064 * 26 24 22 28 28 H 1.48496 * 109.47505 * 210.00502 * 26 24 22 29 29 H 1.48503 * 109.47162 * 330.00382 * 26 24 22 30 30 H 1.08995 * 109.47368 * 270.15653 * 1 2 3 31 31 H 1.08996 * 109.46829 * 30.15930 * 1 2 3 32 32 H 1.08998 * 109.46839 * 150.15895 * 1 2 3 33 33 H 1.08999 * 109.47699 * 270.00702 * 6 5 4 34 34 H 1.09000 * 109.47307 * 30.00643 * 6 5 4 35 35 H 1.09000 * 109.47251 * 150.00043 * 6 5 4 36 36 H 1.08998 * 109.47189 * 60.00301 * 11 10 8 37 37 H 1.08997 * 109.47559 * 300.00233 * 11 10 8 38 38 H 0.97001 * 119.99900 * 5.72904 * 14 12 11 39 39 H 1.07998 * 119.98998 * 0.02562 * 16 15 14 40 40 H 1.08000 * 119.87651 * 179.97438 * 17 16 15 41 41 H 1.07999 * 119.89018 * 179.74198 * 18 17 16 42 42 H 1.08001 * 120.01104 * 179.97438 * 19 18 17 43 43 H 0.97004 * 119.99986 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4609 0.7210 -0.0063 5 6 3.6503 -0.6002 -0.0050 6 6 4.9724 -1.3233 -0.0121 7 6 2.3996 -1.1699 0.0028 8 6 2.0412 -2.5981 0.0078 9 8 1.8990 -3.1853 1.0623 10 8 1.8709 -3.2541 -1.1571 11 6 1.5190 -4.6604 -1.0762 12 6 1.3718 -5.2221 -2.4669 13 8 1.5459 -4.5073 -3.4312 14 7 1.0457 -6.5185 -2.6390 15 6 1.0264 -7.0703 -3.9248 16 6 1.7958 -6.5107 -4.9338 17 6 1.7749 -7.0570 -6.2033 18 6 0.9885 -8.1633 -6.4733 19 6 0.2186 -8.7291 -5.4763 20 6 0.2317 -8.1867 -4.1966 21 16 -0.7497 -8.9051 -2.9217 22 6 -1.3678 -10.3195 -3.7715 23 1 -1.1527 -10.4555 -4.8210 24 6 -2.1305 -11.2579 -3.0926 25 7 -2.5927 -12.3144 -3.7277 26 14 -2.5021 -11.0229 -1.2771 27 1 -3.7633 -10.2539 -1.1255 28 1 -2.6498 -12.3494 -0.6262 29 1 -1.3884 -10.2784 -0.6362 30 1 -0.3634 0.0028 1.0276 31 1 -0.3633 0.8885 -0.5163 32 1 -0.3633 -0.8914 -0.5114 33 1 5.2848 -1.4995 -1.0414 34 1 5.7215 -0.7159 0.4959 35 1 4.8674 -2.2775 0.5042 36 1 0.5770 -4.7689 -0.5386 37 1 2.3035 -5.2015 -0.5474 38 1 0.8245 -7.0690 -1.8716 39 1 2.4116 -5.6477 -4.7276 40 1 2.3747 -6.6191 -6.9874 41 1 0.9733 -8.5829 -7.4683 42 1 -0.3941 -9.5921 -5.6910 43 1 -3.1259 -12.9710 -3.2528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003450291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:53 Heat of formation + Delta-G solvation = -22.695314 kcal Electronic energy + Delta-G solvation = -30250.649541 eV Core-core repulsion = 25777.278305 eV Total energy + Delta-G solvation = -4473.371235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.36957 -40.99445 -40.13004 -37.99931 -36.76435 -35.10348 -34.66951 -34.13857 -32.79805 -30.56352 -30.42265 -29.28280 -28.81828 -27.92519 -26.06232 -25.25353 -22.77969 -22.31801 -21.65759 -20.58839 -20.39462 -18.74791 -18.68094 -18.23616 -17.63897 -17.23087 -16.94920 -16.64774 -16.37261 -16.07720 -15.33524 -15.28622 -14.69081 -14.51215 -14.08832 -13.97546 -13.90384 -13.81439 -13.64767 -13.47190 -13.25885 -13.18017 -13.09808 -12.90287 -12.81260 -12.48716 -12.03661 -11.64477 -11.49184 -11.32751 -11.29604 -11.22125 -11.19040 -10.75096 -10.41870 -10.32250 -9.96077 -9.90190 -9.69102 -9.50963 -9.03340 -8.89363 -7.87265 -6.88369 -6.57053 -4.34355 0.72412 1.35578 1.43733 1.60845 1.86169 1.91161 2.46726 2.55616 2.68511 3.07067 3.13178 3.16390 3.31900 3.62861 3.71205 4.00005 4.23936 4.26856 4.29239 4.33009 4.50396 4.65511 4.69242 4.74095 4.83508 4.84038 4.89306 5.04800 5.05485 5.20338 5.34973 5.45960 5.53859 5.56932 5.72289 5.73954 5.93109 6.04156 6.38972 6.64573 6.71822 6.92957 7.08263 7.12690 7.44774 7.47559 7.66599 7.72800 8.01947 8.24955 8.83856 10.50114 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.012492 B = 0.002046 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.946110 B =13684.559329 C =15102.038806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.069 3.931 3 N -0.351 5.351 4 O 0.101 5.899 5 C 0.040 3.960 6 C -0.085 4.085 7 C -0.240 4.240 8 C 0.556 3.444 9 O -0.483 6.483 10 O -0.318 6.318 11 C 0.048 3.952 12 C 0.513 3.487 13 O -0.501 6.501 14 N -0.651 5.651 15 C 0.128 3.872 16 C -0.114 4.114 17 C -0.137 4.137 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.083 4.083 21 S -0.058 6.058 22 C -0.532 4.532 23 H 0.112 0.888 24 C 0.099 3.901 25 N -0.863 5.863 26 Si 0.854 3.146 27 H -0.265 1.265 28 H -0.269 1.269 29 H -0.237 1.237 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.413 0.587 39 H 0.138 0.862 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.147 0.853 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.357 19.560 7.545 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 N -0.059 5.059 4 O 0.041 5.959 5 C -0.023 4.023 6 C -0.142 4.142 7 C -0.246 4.246 8 C 0.397 3.603 9 O -0.369 6.369 10 O -0.233 6.233 11 C -0.030 4.030 12 C 0.298 3.702 13 O -0.375 6.375 14 N -0.297 5.297 15 C 0.027 3.973 16 C -0.135 4.135 17 C -0.160 4.160 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.199 4.199 21 S 0.193 5.807 22 C -0.678 4.678 23 H 0.129 0.871 24 C -0.112 4.112 25 N -0.497 5.497 26 Si 0.678 3.322 27 H -0.190 1.190 28 H -0.193 1.193 29 H -0.161 1.161 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.251 0.749 39 H 0.156 0.844 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.164 0.836 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.797 21.244 8.520 25.750 hybrid contribution -0.468 -1.846 -0.059 1.905 sum 11.329 19.398 8.460 24.004 Atomic orbital electron populations 1.20313 0.84679 1.04793 1.04189 1.24737 0.98745 0.85782 1.00043 1.73641 0.88959 1.22963 1.20292 1.84567 1.21567 1.22084 1.67700 1.24654 0.97069 0.83908 0.96679 1.20585 0.88849 0.99402 1.05367 1.20750 0.93617 0.91924 1.18283 1.19563 0.73454 0.85504 0.81808 1.90927 1.45605 1.68063 1.32329 1.86693 1.79623 1.23874 1.33111 1.22788 1.04387 0.79414 0.96363 1.19909 0.78067 0.81938 0.90269 1.90723 1.47783 1.57970 1.41072 1.43176 1.67403 1.10224 1.08886 1.17149 0.99531 0.96099 0.84522 1.21075 0.99106 1.00863 0.92463 1.20840 1.01415 0.97476 0.96268 1.21039 0.97421 0.96382 0.98775 1.21443 1.00323 1.01190 0.91224 1.21857 0.99943 0.98707 0.99442 1.82541 1.52557 1.28334 1.17263 1.22623 1.38855 1.05939 1.00410 0.87086 1.24795 0.93824 0.93695 0.98865 1.69916 1.32644 1.10016 1.37170 0.86823 0.81152 0.79554 0.84670 1.18957 1.19350 1.16134 0.89243 0.89340 0.89521 0.87865 0.88530 0.88660 0.87246 0.87243 0.74945 0.84443 0.86605 0.86605 0.83557 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.49 36.01 0.38 -0.25 16 2 C 0.07 0.71 7.59 -79.75 -0.61 0.10 16 3 N -0.35 -3.79 12.01 34.79 0.42 -3.37 16 4 O 0.10 0.95 11.06 18.70 0.21 1.16 16 5 C 0.04 0.34 7.55 -34.60 -0.26 0.08 16 6 C -0.08 -0.38 10.33 36.00 0.37 -0.01 16 7 C -0.24 -2.49 6.37 -102.91 -0.66 -3.15 16 8 C 0.56 6.24 7.74 34.39 0.27 6.51 16 9 O -0.48 -6.14 16.90 -19.29 -0.33 -6.47 16 10 O -0.32 -3.77 9.77 -47.36 -0.46 -4.24 16 11 C 0.05 0.50 5.96 36.01 0.21 0.72 16 12 C 0.51 7.15 7.71 -10.99 -0.08 7.06 16 13 O -0.50 -8.56 13.68 -14.11 -0.19 -8.75 16 14 N -0.65 -9.69 5.17 -9.70 -0.05 -9.74 16 15 C 0.13 2.30 6.44 -83.44 -0.54 1.77 16 16 C -0.11 -1.94 8.71 -39.42 -0.34 -2.29 16 17 C -0.14 -2.20 10.04 -39.53 -0.40 -2.59 16 18 C -0.12 -1.96 10.03 -39.58 -0.40 -2.36 16 19 C -0.12 -2.34 9.26 -39.36 -0.36 -2.70 16 20 C -0.08 -1.69 6.12 -38.75 -0.24 -1.92 16 21 S -0.06 -1.27 18.34 -107.50 -1.97 -3.24 16 22 C -0.53 -13.86 9.62 30.90 0.30 -13.56 16 23 H 0.11 3.04 5.04 -52.49 -0.26 2.77 16 24 C 0.10 2.62 5.50 -17.46 -0.10 2.53 16 25 N -0.86 -23.99 13.97 55.48 0.78 -23.21 16 26 Si 0.85 19.10 27.73 -169.99 -4.71 14.38 16 27 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 28 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 29 H -0.24 -5.01 6.74 56.52 0.38 -4.63 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.09 0.41 8.11 -51.93 -0.42 -0.01 16 36 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.41 5.49 7.65 -40.82 -0.31 5.18 16 39 H 0.14 2.30 5.79 -52.49 -0.30 1.99 16 40 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 42 H 0.15 3.18 4.93 -52.49 -0.26 2.92 16 43 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 391.97 15.07 5.91 5.91 Total: -1.00 -32.65 391.97 -7.38 -40.04 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.52 Total: 7.60 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -2.45 Total: -10.07 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 1.14 Total: -36.33 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.77 Total: -18.29 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.38 kcal Atomic # 16 Polarization: -1.27 SS G_CDS: -1.97 Total: -3.24 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.65 -7.38 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003450291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.342 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds