Wall clock time and date at job start Tue Mar 31 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29880 * 125.73748 * 2 1 4 4 N 1.39772 * 109.44447 * 179.97438 * 3 2 1 5 5 C 1.46505 * 125.94138 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46887 * 90.02615 * 5 4 3 7 7 C 1.38236 * 120.00869 * 264.72628 * 6 5 4 8 8 C 1.38216 * 120.01512 * 180.27981 * 7 6 5 9 9 C 1.38266 * 120.02635 * 359.97438 * 8 7 6 10 10 C 1.38187 * 120.01387 * 359.97438 * 9 8 7 11 11 C 1.38335 * 120.00696 * 85.00082 * 6 5 4 12 12 Cl 1.73605 * 120.00982 * 359.69928 * 11 6 5 13 13 C 1.36706 * 108.11444 * 0.26314 * 4 3 2 14 14 S 1.75890 * 142.79598 * 180.59065 * 13 4 3 15 15 C 1.75574 * 91.47545 * 179.31315 * 14 13 4 16 16 C 1.46352 * 124.79370 * 179.82944 * 15 14 13 17 17 O 1.21662 * 119.99790 * 179.97438 * 16 15 14 18 18 O 1.34904 * 119.99753 * 359.97353 * 16 15 14 19 19 C 1.34855 * 116.99912 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99861 * 0.02562 * 19 18 16 21 21 C 1.38771 * 120.00222 * 179.97438 * 19 18 16 22 22 N 1.31439 * 120.00197 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00233 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47198 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47502 * 120.00396 * 23 21 19 26 26 H 1.48504 * 109.47172 * 240.00476 * 23 21 19 27 27 C 1.34284 * 110.41484 * 359.80567 * 15 14 13 28 28 C 1.38585 * 107.40872 * 359.58353 * 13 4 3 29 29 H 1.08993 * 109.47157 * 90.02393 * 1 2 3 30 30 H 1.08999 * 109.47030 * 210.02511 * 1 2 3 31 31 H 1.09000 * 109.47316 * 330.02137 * 1 2 3 32 32 H 1.09002 * 109.46826 * 330.03079 * 5 4 3 33 33 H 1.08998 * 109.47228 * 210.02718 * 5 4 3 34 34 H 1.08001 * 119.99337 * 0.25416 * 7 6 5 35 35 H 1.07998 * 119.98621 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.99558 * 180.02562 * 9 8 7 37 37 H 1.08003 * 120.01124 * 179.97438 * 10 9 8 38 38 H 0.96994 * 120.00727 * 179.97438 * 22 21 19 39 39 H 1.08008 * 122.35690 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0542 0.0000 4 7 3.6072 0.6621 0.0006 5 6 4.7653 1.5593 0.0002 6 6 5.1624 1.8674 1.4209 7 6 4.6966 3.0146 2.0357 8 6 5.0654 3.3002 3.3368 9 6 5.9000 2.4386 4.0244 10 6 6.3655 1.2909 3.4113 11 6 5.9978 1.0052 2.1082 12 17 6.5826 -0.4360 1.3370 13 6 3.6506 -0.7042 -0.0050 14 16 4.7581 -2.0707 0.0021 15 6 3.4230 -3.2109 0.0021 16 6 3.5684 -4.6672 0.0034 17 8 2.5805 -5.3772 0.0037 18 8 4.7980 -5.2222 0.0042 19 6 4.8617 -6.5693 0.0059 20 1 3.9528 -7.1528 0.0061 21 6 6.0949 -7.2056 0.0062 22 7 7.2009 -6.4955 0.0054 23 14 6.1831 -9.0715 0.0079 24 1 4.8079 -9.6321 0.0080 25 1 6.9056 -9.5341 -1.2043 26 1 6.9058 -9.5319 1.2207 27 6 2.2495 -2.5581 0.0013 28 6 2.3421 -1.1607 0.0006 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5135 32 1 4.5074 2.4853 -0.5138 33 1 5.5976 1.0782 -0.5135 34 1 4.0447 3.6880 1.4992 35 1 4.7015 4.1968 3.8165 36 1 6.1875 2.6620 5.0412 37 1 7.0177 0.6181 3.9483 38 1 8.0629 -6.9402 0.0060 39 1 1.3008 -3.0744 0.0015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003552995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:53 Heat of formation + Delta-G solvation = 43.488887 kcal Electronic energy + Delta-G solvation = -28312.347130 eV Core-core repulsion = 24146.721927 eV Total energy + Delta-G solvation = -4165.625203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 376.043 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.24903 -39.68015 -38.90841 -36.68267 -35.93877 -34.92188 -34.12468 -32.19304 -31.86362 -31.04850 -28.93811 -28.74875 -26.11774 -25.22712 -23.54735 -23.02216 -22.04244 -21.69320 -19.89503 -18.94183 -18.03262 -17.72006 -17.28636 -16.33183 -16.10886 -15.94466 -15.42650 -15.07218 -14.68375 -14.55745 -14.51474 -14.18652 -14.07201 -13.83012 -13.66542 -13.19585 -13.03600 -12.87781 -12.64835 -12.47044 -12.22457 -11.89679 -11.69714 -11.66438 -11.60160 -11.39614 -11.11403 -11.03478 -10.80329 -10.45663 -10.42729 -10.31329 -9.84107 -9.59871 -9.34975 -9.18170 -9.00969 -8.62867 -8.12344 -7.48649 -6.46918 -4.10203 0.64738 0.88756 1.14253 1.23298 1.78242 1.84246 2.46187 2.58355 2.98912 3.16398 3.17672 3.25456 3.34222 3.88723 3.98894 4.17785 4.19899 4.44513 4.51071 4.60765 4.76548 4.92089 4.95642 5.03322 5.07973 5.12118 5.17327 5.29397 5.52023 5.54336 5.65117 5.74725 5.85572 5.85792 5.96444 6.03896 6.17125 6.39681 6.41714 6.56956 6.76177 6.89678 7.35527 7.60909 7.89000 8.63944 9.01262 9.77510 10.70619 Molecular weight = 376.04amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.003131 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.262902 B = 8939.355136 C =10895.231494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.127 3.873 3 N -0.269 5.269 4 N -0.352 5.352 5 C 0.178 3.822 6 C -0.112 4.112 7 C -0.080 4.080 8 C -0.121 4.121 9 C -0.098 4.098 10 C -0.111 4.111 11 C -0.026 4.026 12 Cl -0.034 7.034 13 C 0.010 3.990 14 S 0.246 5.754 15 C -0.215 4.215 16 C 0.465 3.535 17 O -0.544 6.544 18 O -0.207 6.207 19 C -0.374 4.374 20 H 0.100 0.900 21 C 0.042 3.958 22 N -0.858 5.858 23 Si 0.945 3.055 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.017 4.017 28 C -0.216 4.216 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.271 0.729 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 22.100 4.226 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.047 4.047 3 N -0.087 5.087 4 N -0.139 5.139 5 C 0.056 3.944 6 C -0.114 4.114 7 C -0.099 4.099 8 C -0.139 4.139 9 C -0.117 4.117 10 C -0.130 4.130 11 C -0.054 4.054 12 Cl -0.005 7.005 13 C -0.227 4.227 14 S 0.501 5.499 15 C -0.333 4.333 16 C 0.312 3.688 17 O -0.443 6.443 18 O -0.114 6.114 19 C -0.450 4.450 20 H 0.117 0.883 21 C -0.163 4.163 22 N -0.495 5.495 23 Si 0.769 3.231 24 H -0.188 1.188 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.049 4.049 28 C -0.232 4.232 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.080 0.920 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.105 22.946 4.125 23.340 hybrid contribution -1.185 -1.699 0.036 2.072 sum -2.290 21.247 4.161 21.772 Atomic orbital electron populations 1.20249 0.85942 1.03666 1.03373 1.22281 0.96518 0.88144 0.97787 1.76568 0.85855 1.22758 1.23475 1.47640 1.04001 1.00391 1.61827 1.20533 0.85473 0.94991 0.93357 1.19910 0.98918 0.95719 0.96883 1.21035 0.97999 0.95760 0.95059 1.21250 0.98118 1.00015 0.94562 1.21218 0.96749 0.93583 1.00118 1.21132 1.00775 0.98128 0.92922 1.21161 0.99215 0.90426 0.94584 1.98461 1.86738 1.34844 1.80452 1.24932 1.01103 0.90253 1.06389 1.84630 1.02466 0.87480 1.75296 1.23012 0.97010 0.95900 1.17332 1.19314 0.83585 0.85979 0.79879 1.90683 1.39540 1.62154 1.51880 1.83933 1.27389 1.24803 1.75233 1.21359 0.94706 0.77425 1.51494 0.88277 1.25377 0.93944 1.00839 0.96154 1.69997 0.97688 1.36161 1.45611 0.85584 0.79046 0.80305 0.78182 1.18789 1.20082 1.20071 1.19301 0.98444 0.90304 0.96873 1.18814 0.91350 0.93997 1.19057 0.90038 0.89907 0.90639 0.87170 0.87716 0.84822 0.85171 0.84895 0.84415 0.91954 0.83309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.46 36.01 0.38 -0.37 16 2 C 0.13 1.84 7.28 -81.58 -0.59 1.24 16 3 N -0.27 -3.93 12.44 34.16 0.42 -3.50 16 4 N -0.35 -5.12 3.63 -60.42 -0.22 -5.34 16 5 C 0.18 1.99 6.09 -5.19 -0.03 1.96 16 6 C -0.11 -1.23 5.47 -104.59 -0.57 -1.80 16 7 C -0.08 -0.72 9.68 -39.59 -0.38 -1.11 16 8 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 9 C -0.10 -0.81 10.05 -39.59 -0.40 -1.21 16 10 C -0.11 -1.13 9.83 -39.55 -0.39 -1.52 16 11 C -0.03 -0.31 6.32 -39.50 -0.25 -0.56 16 12 Cl -0.03 -0.48 22.74 -51.86 -1.18 -1.66 16 13 C 0.01 0.17 7.53 -15.25 -0.11 0.05 16 14 S 0.25 4.65 19.02 -107.50 -2.05 2.61 16 15 C -0.21 -4.66 6.32 -37.71 -0.24 -4.90 16 16 C 0.47 12.31 7.86 33.99 0.27 12.58 16 17 O -0.54 -15.24 15.99 -19.39 -0.31 -15.55 16 18 O -0.21 -6.05 9.56 -22.11 -0.21 -6.26 16 19 C -0.37 -11.12 9.65 30.93 0.30 -10.82 16 20 H 0.10 2.96 6.86 -52.48 -0.36 2.60 16 21 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 22 N -0.86 -24.92 13.67 55.48 0.76 -24.16 16 23 Si 0.94 21.20 29.55 -169.99 -5.02 16.17 16 24 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 C -0.02 -0.32 9.85 -40.30 -0.40 -0.71 16 28 C -0.22 -3.67 6.55 -107.25 -0.70 -4.38 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.11 0.95 8.05 -51.93 -0.42 0.54 16 33 H 0.10 1.13 7.13 -51.93 -0.37 0.76 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.15 2.61 7.97 -52.48 -0.42 2.19 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -35.24 371.36 -9.49 -44.73 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -3.66 Total: -0.81 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -3.62 Total: -11.82 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.96 Total: -33.00 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.52 Total: -21.82 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -2.05 Total: 2.61 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.18 Total: -1.66 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.24 -9.49 -44.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003552995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.219 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds