Wall clock time and date at job start Tue Mar 31 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29880 * 125.73748 * 2 1 4 4 N 1.39772 * 109.44447 * 179.97438 * 3 2 1 5 5 C 1.46505 * 125.94138 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46887 * 90.02615 * 5 4 3 7 7 C 1.38236 * 120.00869 * 264.72628 * 6 5 4 8 8 C 1.38216 * 120.01512 * 180.27981 * 7 6 5 9 9 C 1.38266 * 120.02635 * 359.97438 * 8 7 6 10 10 C 1.38187 * 120.01387 * 359.97438 * 9 8 7 11 11 C 1.38335 * 120.00696 * 85.00082 * 6 5 4 12 12 Cl 1.73605 * 120.00982 * 359.69928 * 11 6 5 13 13 C 1.36706 * 108.11444 * 0.26314 * 4 3 2 14 14 S 1.75890 * 142.79598 * 180.59065 * 13 4 3 15 15 C 1.75574 * 91.47545 * 179.31315 * 14 13 4 16 16 C 1.46352 * 124.79370 * 179.82944 * 15 14 13 17 17 O 1.21662 * 119.99790 * 179.97438 * 16 15 14 18 18 O 1.34904 * 119.99753 * 359.97353 * 16 15 14 19 19 C 1.34855 * 116.99912 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99861 * 0.02562 * 19 18 16 21 21 C 1.38771 * 120.00222 * 179.97438 * 19 18 16 22 22 N 1.31439 * 120.00197 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00233 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47198 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47502 * 120.00396 * 23 21 19 26 26 H 1.48504 * 109.47172 * 240.00476 * 23 21 19 27 27 C 1.34284 * 110.41484 * 359.80567 * 15 14 13 28 28 C 1.38585 * 107.40872 * 359.58353 * 13 4 3 29 29 H 1.08993 * 109.47157 * 90.02393 * 1 2 3 30 30 H 1.08999 * 109.47030 * 210.02511 * 1 2 3 31 31 H 1.09000 * 109.47316 * 330.02137 * 1 2 3 32 32 H 1.09002 * 109.46826 * 330.03079 * 5 4 3 33 33 H 1.08998 * 109.47228 * 210.02718 * 5 4 3 34 34 H 1.08001 * 119.99337 * 0.25416 * 7 6 5 35 35 H 1.07998 * 119.98621 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.99558 * 180.02562 * 9 8 7 37 37 H 1.08003 * 120.01124 * 179.97438 * 10 9 8 38 38 H 0.96994 * 120.00727 * 179.97438 * 22 21 19 39 39 H 1.08008 * 122.35690 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0542 0.0000 4 7 3.6072 0.6621 0.0006 5 6 4.7653 1.5593 0.0002 6 6 5.1624 1.8674 1.4209 7 6 4.6966 3.0146 2.0357 8 6 5.0654 3.3002 3.3368 9 6 5.9000 2.4386 4.0244 10 6 6.3655 1.2909 3.4113 11 6 5.9978 1.0052 2.1082 12 17 6.5826 -0.4360 1.3370 13 6 3.6506 -0.7042 -0.0050 14 16 4.7581 -2.0707 0.0021 15 6 3.4230 -3.2109 0.0021 16 6 3.5684 -4.6672 0.0034 17 8 2.5805 -5.3772 0.0037 18 8 4.7980 -5.2222 0.0042 19 6 4.8617 -6.5693 0.0059 20 1 3.9528 -7.1528 0.0061 21 6 6.0949 -7.2056 0.0062 22 7 7.2009 -6.4955 0.0054 23 14 6.1831 -9.0715 0.0079 24 1 4.8079 -9.6321 0.0080 25 1 6.9056 -9.5341 -1.2043 26 1 6.9058 -9.5319 1.2207 27 6 2.2495 -2.5581 0.0013 28 6 2.3421 -1.1607 0.0006 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5135 32 1 4.5074 2.4853 -0.5138 33 1 5.5976 1.0782 -0.5135 34 1 4.0447 3.6880 1.4992 35 1 4.7015 4.1968 3.8165 36 1 6.1875 2.6620 5.0412 37 1 7.0177 0.6181 3.9483 38 1 8.0629 -6.9402 0.0060 39 1 1.3008 -3.0744 0.0015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003552995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:52 Heat of formation + Delta-G solvation = 23.653769 kcal Electronic energy + Delta-G solvation = -28313.207246 eV Core-core repulsion = 24146.721927 eV Total energy + Delta-G solvation = -4166.485318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 376.043 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.48814 -41.00768 -40.43557 -37.71388 -37.61342 -36.57521 -35.28919 -34.35028 -32.75791 -31.77442 -30.43417 -29.61209 -27.85357 -26.63877 -24.98047 -23.79982 -23.51340 -22.57602 -21.26565 -20.60167 -19.95703 -19.18503 -18.32364 -17.92610 -17.05954 -16.83365 -16.73468 -16.64265 -16.55708 -16.30385 -15.95284 -15.54500 -14.93982 -14.83510 -14.59639 -14.48203 -14.23496 -13.95336 -13.82272 -13.66292 -13.36478 -13.34233 -13.18112 -12.87034 -12.69810 -12.53317 -12.41927 -12.30113 -12.23516 -12.08549 -12.02524 -12.00545 -11.61674 -11.21154 -10.78763 -10.73848 -10.09179 -9.86249 -9.54232 -8.86230 -8.58650 -6.36330 -0.43947 -0.27568 0.01840 0.16088 0.54192 0.65176 1.24972 1.33052 1.34160 1.48261 1.52399 1.60036 2.06247 2.13471 2.58913 2.63143 2.96513 3.21651 3.40316 3.58517 3.68544 3.78612 3.97827 4.13752 4.20522 4.31906 4.32603 4.39484 4.43950 4.57421 4.82450 4.83919 4.84517 4.92766 5.00979 5.04229 5.15296 5.19119 5.26156 5.36289 5.38940 5.61585 5.76047 5.76294 6.41306 6.50576 6.85115 7.64393 8.62053 Molecular weight = 376.04amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.003131 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.262902 B = 8939.355136 C =10895.231494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.136 3.864 3 N -0.266 5.266 4 N -0.344 5.344 5 C 0.168 3.832 6 C -0.126 4.126 7 C -0.080 4.080 8 C -0.115 4.115 9 C -0.094 4.094 10 C -0.126 4.126 11 C -0.047 4.047 12 Cl -0.065 7.065 13 C 0.021 3.979 14 S 0.242 5.758 15 C -0.272 4.272 16 C 0.469 3.531 17 O -0.571 6.571 18 O -0.233 6.233 19 C -0.419 4.419 20 H 0.086 0.914 21 C -0.002 4.002 22 N -0.897 5.897 23 Si 1.020 2.980 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.258 1.258 27 C 0.020 3.980 28 C -0.240 4.240 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.140 0.860 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.140 0.860 38 H 0.281 0.719 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 24.897 5.076 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.039 4.039 3 N -0.083 5.083 4 N -0.130 5.130 5 C 0.048 3.952 6 C -0.128 4.128 7 C -0.099 4.099 8 C -0.132 4.132 9 C -0.112 4.112 10 C -0.145 4.145 11 C -0.075 4.075 12 Cl -0.036 7.036 13 C -0.218 4.218 14 S 0.496 5.504 15 C -0.389 4.389 16 C 0.318 3.682 17 O -0.471 6.471 18 O -0.141 6.141 19 C -0.495 4.495 20 H 0.103 0.897 21 C -0.203 4.203 22 N -0.534 5.534 23 Si 0.839 3.161 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.182 1.182 27 C -0.013 4.013 28 C -0.255 4.255 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.158 0.842 33 H 0.121 0.879 34 H 0.173 0.827 35 H 0.181 0.819 36 H 0.180 0.820 37 H 0.158 0.842 38 H 0.090 0.910 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.294 25.800 4.977 26.376 hybrid contribution -0.910 -2.167 -0.157 2.355 sum -3.204 23.633 4.820 24.332 Atomic orbital electron populations 1.20467 0.82737 1.05104 1.04965 1.22916 0.98389 0.86561 0.96049 1.76610 0.85607 1.22555 1.23542 1.48114 1.05048 0.99670 1.60159 1.20884 0.84455 0.95491 0.94338 1.19947 0.99562 0.96603 0.96675 1.21351 0.97736 0.95083 0.95692 1.21683 0.96877 1.00673 0.94014 1.21601 0.95858 0.92407 1.01308 1.21344 1.01315 0.99295 0.92497 1.21355 1.00774 0.89864 0.95483 1.98442 1.87052 1.37032 1.81113 1.24892 1.00435 0.91271 1.05188 1.84665 1.01829 0.87882 1.76011 1.22748 0.99462 0.93983 1.22730 1.20053 0.82570 0.87883 0.77673 1.90623 1.39946 1.63646 1.52899 1.83956 1.28803 1.24808 1.76578 1.21568 0.95199 0.77931 1.54787 0.89655 1.26603 0.92798 1.06425 0.94465 1.70082 0.98508 1.38716 1.46053 0.84537 0.79286 0.72954 0.79365 1.18667 1.18256 1.18237 1.19493 0.97824 0.91240 0.92752 1.18995 0.92271 0.93721 1.20533 0.88218 0.89118 0.88582 0.84190 0.87929 0.82724 0.81868 0.82039 0.84218 0.90993 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.46 71.24 0.74 -0.50 16 2 C 0.14 3.57 7.28 44.04 0.32 3.89 16 3 N -0.27 -7.01 12.44 -45.84 -0.57 -7.58 16 4 N -0.34 -9.46 3.63 -345.06 -1.25 -10.71 16 5 C 0.17 3.49 6.09 85.63 0.52 4.01 16 6 C -0.13 -2.55 5.47 -19.84 -0.11 -2.66 16 7 C -0.08 -1.18 9.68 22.26 0.22 -0.97 16 8 C -0.11 -1.36 10.05 22.27 0.22 -1.13 16 9 C -0.09 -1.26 10.05 22.26 0.22 -1.04 16 10 C -0.13 -2.44 9.83 22.29 0.22 -2.22 16 11 C -0.05 -1.10 6.32 22.33 0.14 -0.96 16 12 Cl -0.07 -1.91 22.74 -2.72 -0.06 -1.97 16 13 C 0.02 0.72 7.53 84.02 0.63 1.35 16 14 S 0.24 9.56 19.02 -56.49 -1.07 8.49 16 15 C -0.27 -12.39 6.32 23.48 0.15 -12.25 16 16 C 0.47 26.38 7.86 69.93 0.55 26.93 16 17 O -0.57 -33.79 15.99 19.31 0.31 -33.49 16 18 O -0.23 -14.59 9.56 9.56 0.09 -14.50 16 19 C -0.42 -26.36 9.65 67.95 0.66 -25.70 16 20 H 0.09 5.42 6.86 -2.91 -0.02 5.40 16 21 C 0.00 -0.12 5.49 84.88 0.47 0.34 16 22 N -0.90 -53.84 13.67 21.63 0.30 -53.54 16 23 Si 1.02 44.16 29.55 68.60 2.03 46.19 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 26 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 27 C 0.02 0.77 9.85 21.81 0.21 0.98 16 28 C -0.24 -7.94 6.55 -21.57 -0.14 -8.08 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.14 2.02 8.05 -2.39 -0.02 2.01 16 33 H 0.10 2.18 7.13 -2.39 -0.02 2.16 16 34 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 36 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.16 5.56 7.97 -2.91 -0.02 5.54 16 Total: -1.00 -81.31 371.36 5.91 -75.40 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.12 Total: 9.72 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 5.03 Total: -18.01 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -1.53 Total: -71.83 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: 0.40 Total: -47.99 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 9.56 SS G_CDS: -1.07 Total: 8.49 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.06 Total: -1.97 kcal Total: -81.31 5.91 -75.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003552995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.053 kcal (2) G-P(sol) polarization free energy of solvation -81.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds