Wall clock time and date at job start Tue Mar 31 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 O 1.42903 * 109.47300 * 2 1 4 4 C 1.35955 * 116.99720 * 180.02562 * 3 2 1 5 5 C 1.37945 * 120.05265 * 0.26269 * 4 3 2 6 6 C 1.40373 * 119.68203 * 180.29170 * 5 4 3 7 7 C 1.46224 * 120.10259 * 179.71825 * 6 5 4 8 8 C 1.38235 * 119.99986 * 314.49526 * 7 6 5 9 9 C 1.47636 * 121.48307 * 350.47746 * 8 7 6 10 10 O 1.21648 * 120.91702 * 0.04516 * 9 8 7 11 11 N 1.34893 * 118.16516 * 180.02562 * 9 8 7 12 12 C 1.34030 * 121.54459 * 359.72690 * 11 9 8 13 13 S 1.71196 * 118.22906 * 180.27600 * 12 11 9 14 14 N 1.34026 * 123.54767 * 0.58110 * 12 11 9 15 15 C 1.46506 * 119.23154 * 179.69305 * 14 12 11 16 16 C 1.34898 * 121.54294 * 359.41970 * 14 12 11 17 17 O 1.21651 * 120.92186 * 180.25393 * 16 14 12 18 18 C 1.40377 * 119.78948 * 359.44632 * 6 5 4 19 19 C 1.36487 * 120.09739 * 0.25385 * 18 6 5 20 20 C 1.39185 * 120.31762 * 0.03977 * 19 18 6 21 21 O 1.35504 * 119.89347 * 179.97438 * 20 19 18 22 22 C 1.34706 * 117.00040 * 6.09556 * 21 20 19 23 23 H 1.07995 * 119.99696 * 354.82818 * 22 21 20 24 24 C 1.38803 * 119.99835 * 174.83318 * 22 21 20 25 25 N 1.31453 * 120.00200 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 120.00359 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47153 * 89.99986 * 26 24 22 28 28 H 1.48501 * 109.47445 * 210.00251 * 26 24 22 29 29 H 1.48505 * 109.47039 * 330.00449 * 26 24 22 30 30 H 1.09001 * 109.47537 * 59.99851 * 1 2 3 31 31 H 1.09000 * 109.47768 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47198 * 299.99666 * 1 2 3 33 33 H 1.09003 * 109.46941 * 239.99864 * 2 1 3 34 34 H 1.09001 * 109.47537 * 120.00149 * 2 1 3 35 35 H 1.07994 * 120.15723 * 0.02562 * 5 4 3 36 36 H 1.07995 * 120.00094 * 134.49798 * 7 6 5 37 37 H 0.97001 * 119.23060 * 180.02562 * 11 9 8 38 38 H 1.08998 * 109.46994 * 269.73171 * 15 14 12 39 39 H 1.08994 * 109.47065 * 149.73032 * 15 14 12 40 40 H 1.08993 * 109.46585 * 29.73109 * 15 14 12 41 41 H 1.08002 * 119.94970 * 180.27271 * 18 6 5 42 42 H 1.07998 * 119.83713 * 180.02562 * 19 18 6 43 43 H 0.96996 * 120.00557 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5253 -0.0005 5 6 4.1953 0.4321 -0.0065 6 6 5.5858 0.6248 -0.0008 7 6 6.4859 -0.5275 -0.0009 8 6 6.2471 -1.5912 0.8491 9 6 5.2239 -1.5152 1.9106 10 8 4.5587 -0.5087 2.0666 11 7 5.0468 -2.5927 2.7026 12 6 5.7686 -3.7100 2.5381 13 16 5.4686 -5.0295 3.5868 14 7 6.7167 -3.8481 1.6009 15 6 7.4539 -5.1108 1.5096 16 6 7.0042 -2.8535 0.7361 17 8 7.8640 -2.9927 -0.1132 18 6 6.1093 1.9273 -0.0009 19 6 5.2689 3.0028 -0.0012 20 6 3.8895 2.8166 -0.0007 21 8 3.0631 3.8904 -0.0005 22 6 3.6358 5.1029 -0.1283 23 1 4.7119 5.1931 -0.1408 24 6 2.8429 6.2363 -0.2437 25 7 3.4017 7.4196 -0.3679 26 14 0.9816 6.0802 -0.2225 27 1 0.4920 6.1832 1.1757 28 1 0.3842 7.1683 -1.0376 29 1 0.5887 4.7648 -0.7888 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.7861 -0.5673 -0.0112 36 1 7.3374 -0.5475 -0.6649 37 1 4.3784 -2.5597 3.4048 38 1 8.3415 -5.0597 2.1402 39 1 7.7523 -5.2834 0.4756 40 1 6.8164 -5.9287 1.8452 41 1 7.1786 2.0786 -0.0010 42 1 5.6762 4.0030 -0.0016 43 1 2.8477 8.2116 -0.4489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003771452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:40 Heat of formation + Delta-G solvation = -39.886427 kcal Electronic energy + Delta-G solvation = -31966.200743 eV Core-core repulsion = 27492.084045 eV Total energy + Delta-G solvation = -4474.116698 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.35459 -40.20117 -39.65345 -38.24985 -38.06121 -36.70407 -35.35618 -33.58172 -32.81070 -31.66012 -29.91817 -29.30968 -27.99648 -27.14181 -25.74558 -24.09492 -23.71973 -23.05033 -21.59715 -20.97907 -19.66576 -19.30027 -18.49916 -18.22770 -17.68696 -17.20670 -16.75607 -16.51640 -16.06027 -15.85640 -15.56029 -15.33259 -14.98838 -14.71451 -14.54995 -14.23845 -14.15237 -13.94989 -13.55332 -13.37586 -12.94041 -12.76541 -12.74019 -12.62245 -12.54702 -12.41419 -12.26895 -11.83958 -11.70886 -11.42390 -11.17550 -10.91962 -10.83412 -10.58907 -10.48562 -10.40869 -10.37377 -9.89733 -9.77932 -9.19592 -8.60921 -8.14754 -8.03407 -7.32493 -6.87457 -4.38734 -0.48022 0.54447 1.15499 1.68278 1.85817 1.97351 1.99012 2.34370 3.00073 3.03535 3.06267 3.22449 3.51517 3.57301 3.93908 4.06868 4.12203 4.31171 4.70898 4.73773 4.79840 4.98675 5.01745 5.03062 5.08368 5.17911 5.26766 5.32609 5.37147 5.42903 5.52867 5.61666 5.73091 5.83765 5.87947 5.93115 5.96437 6.11526 6.20966 6.42261 6.53803 6.64921 6.86068 7.01558 7.12611 7.25731 7.33995 7.52587 7.86762 8.43268 9.06175 10.16103 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.014816 B = 0.002509 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.458661 B =11158.594473 C =12241.565747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.306 6.306 4 C 0.049 3.951 5 C -0.072 4.072 6 C -0.206 4.206 7 C 0.176 3.824 8 C -0.346 4.346 9 C 0.544 3.456 10 O -0.445 6.445 11 N -0.618 5.618 12 C 0.551 3.449 13 S -0.554 6.554 14 N -0.516 5.516 15 C 0.059 3.941 16 C 0.562 3.438 17 O -0.482 6.482 18 C -0.029 4.029 19 C -0.223 4.223 20 C 0.170 3.830 21 O -0.169 6.169 22 C -0.378 4.378 23 H 0.117 0.883 24 C 0.068 3.932 25 N -0.846 5.846 26 Si 0.906 3.094 27 H -0.268 1.268 28 H -0.277 1.277 29 H -0.250 1.250 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.150 0.850 37 H 0.442 0.558 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 -17.159 0.407 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.221 6.221 4 C 0.004 3.996 5 C -0.091 4.091 6 C -0.208 4.208 7 C 0.155 3.845 8 C -0.354 4.354 9 C 0.333 3.667 10 O -0.315 6.315 11 N -0.266 5.266 12 C 0.201 3.799 13 S -0.421 6.421 14 N -0.237 5.237 15 C -0.081 4.081 16 C 0.355 3.645 17 O -0.356 6.356 18 C -0.048 4.048 19 C -0.242 4.242 20 C 0.112 3.888 21 O -0.069 6.069 22 C -0.452 4.452 23 H 0.134 0.866 24 C -0.140 4.140 25 N -0.478 5.478 26 Si 0.730 3.270 27 H -0.193 1.193 28 H -0.202 1.202 29 H -0.174 1.174 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.135 0.865 36 H 0.167 0.833 37 H 0.287 0.713 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.163 0.837 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.011 -16.855 0.439 17.127 hybrid contribution -0.573 0.542 -0.030 0.790 sum 2.438 -16.313 0.409 16.499 Atomic orbital electron populations 1.21741 0.93229 1.02190 1.03591 1.22624 0.95563 0.83138 1.00534 1.86153 1.18482 1.27525 1.89894 1.17821 0.82624 0.90997 1.08119 1.20599 0.92040 0.96260 1.00246 1.18025 0.92029 0.91917 1.18803 1.23203 0.90973 0.86728 0.83555 1.21452 1.08696 0.98347 1.06905 1.18888 0.83402 0.82505 0.81888 1.91084 1.44412 1.27724 1.68297 1.44307 1.36345 1.11454 1.34485 1.22153 0.80894 0.90483 0.86369 1.93613 1.78498 1.27979 1.41984 1.45685 1.32080 1.18129 1.27824 1.22544 0.97520 0.83167 1.04904 1.18776 0.82483 0.83218 0.80064 1.90859 1.30714 1.80904 1.33098 1.20616 0.98977 0.90440 0.94718 1.20619 0.91365 1.00386 1.11824 1.18740 0.89362 0.84981 0.95734 1.83523 1.35361 1.13797 1.74188 1.21116 0.95175 0.79493 1.49444 0.86612 1.24638 1.01398 0.93401 0.94611 1.69576 1.37982 0.98230 1.42050 0.86135 0.81877 0.79574 0.79462 1.19253 1.20236 1.17352 0.91597 0.90891 0.91544 0.93002 0.92599 0.86533 0.83285 0.71260 0.89604 0.88559 0.86285 0.86126 0.83681 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 37.15 0.38 -1.37 16 2 C 0.06 0.80 5.46 37.15 0.20 1.01 16 3 O -0.31 -5.83 9.92 -34.13 -0.34 -6.17 16 4 C 0.05 0.95 6.70 -39.11 -0.26 0.69 16 5 C -0.07 -1.16 5.57 -38.89 -0.22 -1.38 16 6 C -0.21 -3.05 4.77 -105.08 -0.50 -3.55 16 7 C 0.18 2.09 9.44 -36.38 -0.34 1.75 16 8 C -0.35 -4.15 5.91 -102.23 -0.60 -4.76 16 9 C 0.54 6.79 7.34 -12.37 -0.09 6.70 16 10 O -0.44 -6.80 13.01 5.24 0.07 -6.73 16 11 N -0.62 -6.51 5.15 -14.14 -0.07 -6.58 16 12 C 0.55 5.99 7.64 -88.26 -0.67 5.32 16 13 S -0.55 -6.99 28.23 -107.50 -3.03 -10.02 16 14 N -0.52 -5.33 2.94 -126.13 -0.37 -5.70 16 15 C 0.06 0.47 9.79 59.85 0.59 1.06 16 16 C 0.56 6.50 7.64 -12.37 -0.09 6.41 16 17 O -0.48 -6.23 16.16 5.23 0.08 -6.14 16 18 C -0.03 -0.44 9.74 -39.41 -0.38 -0.83 16 19 C -0.22 -4.17 9.09 -39.86 -0.36 -4.53 16 20 C 0.17 3.61 6.68 -38.65 -0.26 3.35 16 21 O -0.17 -4.11 8.35 -13.38 -0.11 -4.22 16 22 C -0.38 -9.54 9.94 30.94 0.31 -9.23 16 23 H 0.12 2.90 5.41 -52.49 -0.28 2.62 16 24 C 0.07 1.72 5.50 -17.50 -0.10 1.62 16 25 N -0.85 -21.86 13.96 55.49 0.77 -21.09 16 26 Si 0.91 19.86 28.62 -169.99 -4.86 14.99 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 28 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 29 H -0.25 -5.63 7.11 56.52 0.40 -5.22 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.65 7.65 -51.93 -0.40 0.26 16 34 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 35 H 0.12 1.71 5.30 -52.49 -0.28 1.43 16 36 H 0.15 1.42 7.79 -52.49 -0.41 1.01 16 37 H 0.44 4.06 8.64 -40.82 -0.35 3.71 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.69 7.40 -51.93 -0.38 0.30 16 40 H 0.12 0.94 6.33 -51.53 -0.33 0.62 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.15 2.77 5.61 -52.49 -0.29 2.47 16 43 H 0.29 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -29.34 379.89 -8.92 -38.26 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.37 Total: 5.42 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.41 Total: 2.25 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.33 Total: -33.36 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.30 Total: -23.26 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.86 Total: 14.99 kcal Atomic # 16 Polarization: -6.99 SS G_CDS: -3.03 Total: -10.02 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.34 -8.92 -38.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003771452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.624 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds