Wall clock time and date at job start Tue Mar 31 2020 06:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.62477 * 2 1 4 4 C 1.53225 * 109.62658 * 239.42135 * 2 1 3 5 5 C 1.52962 * 109.40469 * 185.65509 * 4 2 1 6 6 C 1.52961 * 109.81472 * 63.59857 * 5 4 2 7 7 C 1.53232 * 109.40506 * 296.40044 * 6 5 4 8 8 H 1.08988 * 109.62653 * 294.72188 * 7 6 5 9 9 C 1.53000 * 109.62400 * 174.34039 * 7 6 5 10 10 C 1.50696 * 109.46977 * 175.00078 * 9 7 6 11 11 H 1.08001 * 120.00297 * 0.02562 * 10 9 7 12 12 C 1.37884 * 119.99975 * 179.97438 * 10 9 7 13 13 N 1.31513 * 120.00025 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99966 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47004 * 90.00232 * 14 12 10 16 16 H 1.48499 * 109.47128 * 210.00280 * 14 12 10 17 17 H 1.48500 * 109.47033 * 330.00415 * 14 12 10 18 18 C 1.51271 * 109.62470 * 120.37285 * 2 1 3 19 19 N 1.28012 * 120.85262 * 351.08919 * 18 2 1 20 20 N 1.40097 * 120.00094 * 331.24659 * 19 18 2 21 21 C 1.39601 * 120.00480 * 173.06437 * 20 19 18 22 22 C 1.38992 * 120.07747 * 352.72566 * 21 20 19 23 23 C 1.38062 * 119.91863 * 179.79197 * 22 21 20 24 24 C 1.38319 * 120.08178 * 0.48823 * 23 22 21 25 25 N 1.48026 * 119.92234 * 179.71921 * 24 23 22 26 26 O 1.21801 * 120.00456 * 180.02562 * 25 24 23 27 27 O 1.21808 * 119.99806 * 0.02562 * 25 24 23 28 28 C 1.38274 * 120.15818 * 359.74888 * 24 23 22 29 29 C 1.38112 * 120.08213 * 0.02562 * 28 24 23 30 30 N 1.48022 * 120.04111 * 179.97438 * 29 28 24 31 31 O 1.21800 * 120.00358 * 5.75225 * 30 29 28 32 32 O 1.21801 * 119.99740 * 185.76512 * 30 29 28 33 33 H 1.09003 * 109.47013 * 328.99442 * 1 2 3 34 34 H 1.08994 * 109.46814 * 89.00088 * 1 2 3 35 35 H 1.09003 * 109.47147 * 208.99920 * 1 2 3 36 36 H 1.08996 * 109.48195 * 65.67875 * 4 2 1 37 37 H 1.08999 * 109.48523 * 305.63640 * 4 2 1 38 38 H 1.09002 * 109.41376 * 303.49696 * 5 4 2 39 39 H 1.08994 * 109.41341 * 183.70344 * 5 4 2 40 40 H 1.08998 * 109.48258 * 56.38086 * 6 5 4 41 41 H 1.09000 * 109.48263 * 176.41891 * 6 5 4 42 42 H 1.08997 * 109.47437 * 295.00029 * 9 7 6 43 43 H 1.09000 * 109.47437 * 54.99890 * 9 7 6 44 44 H 0.96996 * 119.99560 * 179.97438 * 13 12 10 45 45 H 0.97008 * 119.99813 * 353.05945 * 20 19 18 46 46 H 1.08001 * 120.03524 * 0.02562 * 22 21 20 47 47 H 1.08001 * 119.95875 * 180.20708 * 23 22 21 48 48 H 1.08007 * 119.96125 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7342 -1.2425 5 6 3.5677 -0.8548 -1.1671 6 6 3.9608 -1.7144 0.0355 7 6 3.5183 -1.0170 1.3261 8 1 4.0736 -0.0872 1.4488 9 6 3.7814 -1.9343 2.5220 10 6 3.4601 -1.2003 3.7984 11 1 3.1035 -0.1816 3.7604 12 6 3.6204 -1.8297 5.0147 13 7 4.0541 -3.0704 5.0610 14 14 3.2215 -0.9201 6.5967 15 1 1.7964 -1.1428 6.9499 16 1 4.0878 -1.4271 7.6911 17 1 3.4631 0.5328 6.4068 18 6 2.0381 -0.7204 1.2293 19 7 1.2359 -1.0706 2.1634 20 7 0.0678 -0.3331 2.3968 21 6 -0.8773 -0.7944 3.3148 22 6 -0.7372 -2.0541 3.8854 23 6 -1.6715 -2.5052 4.7962 24 6 -2.7515 -1.7095 5.1335 25 7 -3.7544 -2.1993 6.1058 26 8 -4.7062 -1.5000 6.4035 27 8 -3.6279 -3.3017 6.6081 28 6 -2.8967 -0.4578 4.5642 29 6 -1.9635 0.0021 3.6558 30 7 -2.1202 1.3419 3.0464 31 8 -3.0121 2.0814 3.4222 32 8 -1.3574 1.7049 2.1690 33 1 -0.3633 0.8809 0.5294 34 1 -0.3633 0.0179 -1.0275 35 1 -0.3633 -0.8988 0.4982 36 1 1.7681 -0.1746 -2.1360 37 1 1.6029 -1.7297 -1.2856 38 1 4.0049 0.1381 -1.0612 39 1 3.9401 -1.3180 -2.0808 40 1 3.4737 -2.6866 -0.0378 41 1 5.0424 -1.8495 0.0477 42 1 3.1526 -2.8213 2.4449 43 1 4.8300 -2.2318 2.5281 44 1 4.1672 -3.5129 5.9166 45 1 -0.0842 0.4981 1.9204 46 1 0.1036 -2.6775 3.6194 47 1 -1.5615 -3.4826 5.2425 48 1 -3.7414 0.1607 4.8295 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004114480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:21 Heat of formation + Delta-G solvation = 84.030428 kcal Electronic energy + Delta-G solvation = -36114.008343 eV Core-core repulsion = 31370.638057 eV Total energy + Delta-G solvation = -4743.370285 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.163 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.64934 -42.14031 -40.20458 -39.33830 -37.18274 -36.59535 -36.22014 -34.18822 -33.35579 -32.35152 -32.18915 -30.38338 -29.24948 -27.01586 -26.87842 -26.23991 -24.80424 -23.47682 -22.97695 -22.37056 -21.19779 -20.54192 -20.20507 -19.34394 -18.97403 -18.53022 -18.11156 -17.89495 -17.78508 -17.54572 -16.68331 -16.35972 -15.35674 -15.10026 -14.75652 -14.65622 -14.46616 -14.24617 -13.92775 -13.51481 -13.32340 -13.22410 -12.59597 -12.57553 -12.41003 -12.12684 -11.96374 -11.87797 -11.64179 -11.60620 -11.57011 -11.42104 -11.26588 -11.22499 -11.18526 -11.17640 -10.97786 -10.75671 -10.64192 -10.55275 -10.20919 -10.12041 -10.07287 -9.80763 -9.17932 -9.12281 -8.44888 -7.80406 -6.09185 -4.06843 -0.40324 -0.25206 0.91705 0.99187 1.18196 1.43124 1.87790 2.59632 2.99809 3.20377 3.29627 3.31655 3.83734 4.16398 4.22119 4.30878 4.36123 4.41840 4.57947 4.64678 4.73497 5.00292 5.05274 5.11287 5.26053 5.28979 5.30672 5.35587 5.43838 5.50822 5.51972 5.61739 5.70673 5.80760 5.88741 5.91059 6.01825 6.09300 6.14928 6.15512 6.28086 6.36174 6.44645 6.57753 6.61352 6.76615 7.38271 7.49972 7.60527 7.61915 7.86942 8.23815 8.28714 8.93345 9.53837 11.02131 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007536 B = 0.004063 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3714.536401 B = 6890.276788 C = 9121.953410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 H 0.091 0.909 4 C -0.100 4.100 5 C -0.123 4.123 6 C -0.115 4.115 7 C -0.028 4.028 8 H 0.093 0.907 9 C 0.032 3.968 10 C -0.491 4.491 11 H 0.047 0.953 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.875 3.125 15 H -0.283 1.283 16 H -0.285 1.285 17 H -0.277 1.277 18 C 0.141 3.859 19 N -0.218 5.218 20 N -0.542 5.542 21 C 0.337 3.663 22 C -0.148 4.148 23 C 0.017 3.983 24 C -0.108 4.108 25 N 0.044 4.956 26 O -0.170 6.170 27 O -0.160 6.160 28 C 0.055 3.945 29 C -0.138 4.138 30 N 0.058 4.942 31 O -0.139 6.139 32 O -0.207 6.207 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.026 0.974 43 H 0.023 0.977 44 H 0.260 0.740 45 H 0.414 0.586 46 H 0.184 0.816 47 H 0.169 0.831 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 3.362 -11.062 13.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.120 4.120 3 H 0.109 0.891 4 C -0.138 4.138 5 C -0.161 4.161 6 C -0.153 4.153 7 C -0.049 4.049 8 H 0.111 0.889 9 C -0.005 4.005 10 C -0.530 4.530 11 H 0.066 0.934 12 C -0.137 4.137 13 N -0.533 5.533 14 Si 0.704 3.296 15 H -0.210 1.210 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.051 4.051 19 N -0.021 5.021 20 N -0.267 5.267 21 C 0.217 3.783 22 C -0.171 4.171 23 C -0.004 4.004 24 C -0.196 4.196 25 N 0.561 4.439 26 O -0.383 6.383 27 O -0.375 6.375 28 C 0.035 3.965 29 C -0.231 4.231 30 N 0.568 4.432 31 O -0.361 6.361 32 O -0.402 6.402 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.274 0.726 46 H 0.201 0.799 47 H 0.186 0.814 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.982 2.303 -10.583 12.886 hybrid contribution -0.713 1.622 0.366 1.809 sum -7.695 3.926 -10.218 13.380 Atomic orbital electron populations 1.22590 0.95234 1.02518 1.03363 1.21159 0.95192 1.00944 0.94716 0.89082 1.21529 0.96427 1.00392 0.95476 1.21590 0.94974 1.00792 0.98733 1.21724 1.01475 0.98905 0.93224 1.20675 0.85221 1.01525 0.97442 0.88903 1.19105 0.97369 0.94218 0.89839 1.20954 1.42683 0.98728 0.90648 0.93445 1.24826 0.95645 0.94752 0.98488 1.69922 1.46747 1.11282 1.25330 0.86864 0.78300 0.80176 0.84265 1.20971 1.21105 1.20240 1.25736 0.96505 0.92889 0.89938 1.75050 0.90381 1.15050 1.21612 1.48419 1.17954 1.23268 1.37086 1.17635 0.83547 0.91182 0.85942 1.21087 1.02036 0.94651 0.99284 1.21165 0.88268 0.99847 0.91158 1.20434 0.96825 0.97921 1.04378 1.43248 1.00627 1.00290 0.99737 1.94538 1.22338 1.55740 1.65701 1.94554 1.81875 1.06784 1.54301 1.20239 0.96301 0.92784 0.87198 1.20037 1.03844 0.87336 1.11850 1.43157 0.99248 1.01889 0.98895 1.94552 1.25892 1.50717 1.64912 1.94144 1.41760 1.78724 1.25558 0.90611 0.91265 0.91923 0.91439 0.91688 0.91739 0.91871 0.91735 0.91073 0.95550 0.95883 0.93048 0.72649 0.79854 0.81402 0.80551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 7.83 37.16 0.29 -1.78 16 2 C -0.10 -1.17 2.90 -91.38 -0.27 -1.43 16 3 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.10 -0.99 5.07 -26.63 -0.13 -1.13 16 5 C -0.12 -1.24 5.81 -26.77 -0.16 -1.39 16 6 C -0.11 -1.48 5.23 -26.63 -0.14 -1.62 16 7 C -0.03 -0.46 2.42 -91.37 -0.22 -0.68 16 8 H 0.09 1.50 8.14 -51.94 -0.42 1.08 16 9 C 0.03 0.69 4.12 -27.88 -0.11 0.57 16 10 C -0.49 -12.14 7.55 -34.44 -0.26 -12.40 16 11 H 0.05 1.19 7.53 -52.49 -0.40 0.80 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 14 Si 0.88 20.93 29.54 -169.99 -5.02 15.90 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 18 C 0.14 2.18 5.86 -78.35 -0.46 1.72 16 19 N -0.22 -3.76 7.49 35.88 0.27 -3.49 16 20 N -0.54 -8.49 4.12 32.42 0.13 -8.36 16 21 C 0.34 5.12 6.70 -83.78 -0.56 4.56 16 22 C -0.15 -2.17 9.51 -39.37 -0.37 -2.55 16 23 C 0.02 0.22 9.55 -39.62 -0.38 -0.15 16 24 C -0.11 -1.48 6.85 -79.90 -0.55 -2.03 16 25 N 0.04 0.65 4.45 33.99 0.15 0.80 16 26 O -0.17 -2.57 18.44 -29.46 -0.54 -3.11 16 27 O -0.16 -2.46 18.44 -29.46 -0.54 -3.00 16 28 C 0.06 0.72 9.06 -39.61 -0.36 0.36 16 29 C -0.14 -1.96 6.86 -79.73 -0.55 -2.51 16 30 N 0.06 0.85 4.45 34.07 0.15 1.00 16 31 O -0.14 -2.03 18.46 -29.46 -0.54 -2.57 16 32 O -0.21 -3.10 14.17 -29.46 -0.42 -3.51 16 33 H 0.08 0.92 4.52 -51.93 -0.23 0.68 16 34 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 35 H 0.06 0.81 6.12 -51.93 -0.32 0.49 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.41 6.08 2.21 -182.93 -0.40 5.68 16 46 H 0.18 2.92 7.38 -52.49 -0.39 2.53 16 47 H 0.17 1.92 7.60 -52.49 -0.40 1.53 16 48 H 0.18 2.01 7.17 -52.48 -0.38 1.63 16 LS Contribution 394.98 15.07 5.95 5.95 Total: -1.00 -28.16 394.98 -10.28 -38.44 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.28 Total: 4.69 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -4.32 Total: -18.89 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 1.44 Total: -33.89 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -2.05 Total: -12.21 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.16 -10.28 -38.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004114480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.466 kcal (2) G-P(sol) polarization free energy of solvation -28.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds