Wall clock time and date at job start Tue Mar 31 2020 06:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.62206 * 2 1 4 4 C 1.53227 * 109.62881 * 120.38628 * 2 1 3 5 5 C 1.52959 * 109.40218 * 174.33974 * 4 2 1 6 6 C 1.52953 * 109.81937 * 296.40164 * 5 4 2 7 7 C 1.53227 * 109.40795 * 63.60069 * 6 5 4 8 8 H 1.09003 * 109.62530 * 65.27518 * 7 6 5 9 9 C 1.52998 * 109.63107 * 185.65836 * 7 6 5 10 10 C 1.50700 * 109.47430 * 184.99978 * 9 7 6 11 11 H 1.07999 * 119.99625 * 359.97438 * 10 9 7 12 12 C 1.37871 * 119.99839 * 180.02562 * 10 9 7 13 13 N 1.31512 * 119.99598 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00541 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46883 * 90.00044 * 14 12 10 16 16 H 1.48494 * 109.47317 * 210.00290 * 14 12 10 17 17 H 1.48502 * 109.46757 * 330.00557 * 14 12 10 18 18 C 1.51268 * 108.53430 * 305.37588 * 7 6 5 19 19 N 1.28022 * 120.84882 * 231.32310 * 18 7 6 20 20 N 1.40097 * 120.00307 * 208.18733 * 19 18 7 21 21 C 1.39605 * 120.00079 * 186.91702 * 20 19 18 22 22 C 1.38985 * 120.07938 * 355.82864 * 21 20 19 23 23 C 1.38068 * 119.91941 * 179.97438 * 22 21 20 24 24 C 1.38326 * 120.07713 * 0.02562 * 23 22 21 25 25 N 1.48027 * 119.91512 * 179.97438 * 24 23 22 26 26 O 1.21792 * 120.00446 * 0.02562 * 25 24 23 27 27 O 1.21809 * 119.99714 * 179.97438 * 25 24 23 28 28 C 1.38270 * 120.16233 * 0.02562 * 24 23 22 29 29 C 1.38109 * 120.08074 * 359.74360 * 28 24 23 30 30 N 1.48026 * 120.04477 * 180.25875 * 29 28 24 31 31 O 1.21802 * 119.99860 * 6.23008 * 30 29 28 32 32 O 1.21801 * 120.00518 * 186.22995 * 30 29 28 33 33 H 1.08999 * 109.47260 * 268.20677 * 1 2 3 34 34 H 1.09004 * 109.47744 * 28.20762 * 1 2 3 35 35 H 1.09000 * 109.47577 * 148.21075 * 1 2 3 36 36 H 1.08994 * 109.48022 * 54.36590 * 4 2 1 37 37 H 1.08995 * 109.48014 * 294.31908 * 4 2 1 38 38 H 1.09003 * 109.41294 * 176.29542 * 5 4 2 39 39 H 1.09003 * 109.35637 * 56.47330 * 5 4 2 40 40 H 1.08997 * 109.48240 * 303.61998 * 6 5 4 41 41 H 1.09008 * 109.48324 * 183.58057 * 6 5 4 42 42 H 1.09007 * 109.47001 * 305.00092 * 9 7 6 43 43 H 1.09004 * 109.47083 * 64.99394 * 9 7 6 44 44 H 0.97010 * 120.00181 * 179.97438 * 13 12 10 45 45 H 0.96997 * 119.99908 * 6.90512 * 20 19 18 46 46 H 1.07997 * 120.04120 * 359.96557 * 22 21 20 47 47 H 1.07998 * 119.96021 * 179.97438 * 23 22 21 48 48 H 1.08004 * 119.96231 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0447 -0.7300 1.2450 5 6 3.5676 -0.8509 1.1698 6 6 3.9607 -1.7145 -0.0298 7 6 3.5181 -1.0216 -1.3228 8 1 4.0735 -0.0921 -1.4486 9 6 3.7812 -1.9428 -2.5157 10 6 3.4599 -1.2131 -3.7945 11 1 3.1033 -0.1943 -3.7598 12 6 3.6201 -1.8466 -5.0085 13 7 3.3402 -1.2096 -6.1245 14 14 4.2362 -3.6090 -5.0685 15 1 3.0801 -4.5395 -5.0167 16 1 4.9910 -3.8270 -6.3285 17 1 5.1272 -3.8616 -3.9076 18 6 2.0380 -0.7246 -1.2269 19 7 1.2359 -1.0771 -2.1603 20 7 0.0622 -0.3469 -2.3883 21 6 -0.8818 -0.8114 -3.3059 22 6 -0.6207 -1.9512 -4.0572 23 6 -1.5569 -2.4080 -4.9634 24 6 -2.7533 -1.7325 -5.1242 25 7 -3.7542 -2.2252 -6.0972 26 8 -3.5242 -3.2243 -6.7545 27 8 -4.8084 -1.6317 -6.2397 28 6 -3.0159 -0.5977 -4.3792 29 6 -2.0862 -0.1376 -3.4675 30 7 -2.3706 1.0742 -2.6663 31 8 -3.4673 1.6006 -2.7267 32 8 -1.5080 1.5448 -1.9465 33 1 -0.3634 -0.0322 1.0271 34 1 -0.3635 0.9056 -0.4857 35 1 -0.3634 -0.8735 -0.5414 36 1 1.6029 -1.7253 1.2913 37 1 1.7682 -0.1673 2.1366 38 1 3.9401 -1.3111 2.0851 39 1 4.0039 0.1420 1.0600 40 1 3.4736 -2.6865 0.0468 41 1 5.0423 -1.8496 -0.0417 42 1 4.8299 -2.2403 -2.5207 43 1 3.1524 -2.8296 -2.4355 44 1 3.4533 -1.6551 -6.9788 45 1 -0.0945 0.4815 -1.9085 46 1 0.3133 -2.4788 -3.9325 47 1 -1.3546 -3.2934 -5.5478 48 1 -3.9512 -0.0730 -4.5072 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004114483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:25 Heat of formation + Delta-G solvation = 90.344011 kcal Electronic energy + Delta-G solvation = -36111.854904 eV Core-core repulsion = 31368.758397 eV Total energy + Delta-G solvation = -4743.096508 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.163 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.61239 -42.09782 -40.19465 -39.33436 -37.17034 -36.55232 -36.21719 -34.24456 -33.33938 -32.30516 -32.18173 -30.41126 -29.44835 -27.21404 -26.96163 -26.28377 -24.79617 -23.40701 -22.76165 -22.30527 -21.24997 -20.41072 -20.15293 -19.34080 -18.96824 -18.49199 -18.07232 -17.86280 -17.71436 -17.50020 -16.88906 -16.58146 -15.41235 -15.08414 -14.68215 -14.53409 -14.44543 -14.18704 -13.95185 -13.56133 -13.27873 -13.20634 -12.76792 -12.52330 -12.46089 -12.33418 -12.01244 -11.88671 -11.73612 -11.56437 -11.56119 -11.46713 -11.30849 -11.26783 -11.18633 -11.13427 -11.01696 -10.82876 -10.62090 -10.28224 -10.21973 -10.09985 -9.98847 -9.73381 -9.34209 -9.17383 -8.61757 -7.77858 -6.11260 -4.06464 -0.35508 -0.20403 0.95929 1.04821 1.21924 1.47747 1.91064 2.64305 3.04441 3.20423 3.31199 3.31711 3.89559 4.22028 4.28141 4.34476 4.35984 4.41382 4.58457 4.67490 4.72977 4.95618 5.05145 5.14893 5.20836 5.23974 5.27433 5.38458 5.43860 5.50436 5.56819 5.59619 5.66481 5.80107 5.85934 5.86652 6.02400 6.09989 6.10349 6.19621 6.25624 6.33706 6.37902 6.47036 6.49465 6.75615 7.05393 7.19713 7.43824 7.65095 7.66496 8.24672 8.42594 8.91459 9.50131 11.01714 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007477 B = 0.004122 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3743.996076 B = 6791.487960 C = 9651.053245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 H 0.092 0.908 4 C -0.100 4.100 5 C -0.123 4.123 6 C -0.118 4.118 7 C -0.017 4.017 8 H 0.098 0.902 9 C -0.007 4.007 10 C -0.493 4.493 11 H 0.068 0.932 12 C 0.069 3.931 13 N -0.902 5.902 14 Si 0.871 3.129 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.267 1.267 18 C 0.135 3.865 19 N -0.216 5.216 20 N -0.540 5.540 21 C 0.339 3.661 22 C -0.140 4.140 23 C 0.016 3.984 24 C -0.105 4.105 25 N 0.044 4.956 26 O -0.160 6.160 27 O -0.171 6.171 28 C 0.054 3.946 29 C -0.136 4.136 30 N 0.058 4.942 31 O -0.141 6.141 32 O -0.206 6.206 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.022 0.978 43 H 0.020 0.980 44 H 0.262 0.738 45 H 0.414 0.586 46 H 0.185 0.815 47 H 0.167 0.833 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 0.024 12.749 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.139 4.139 5 C -0.160 4.160 6 C -0.156 4.156 7 C -0.037 4.037 8 H 0.116 0.884 9 C -0.045 4.045 10 C -0.532 4.532 11 H 0.086 0.914 12 C -0.132 4.132 13 N -0.541 5.541 14 Si 0.698 3.302 15 H -0.204 1.204 16 H -0.216 1.216 17 H -0.191 1.191 18 C -0.057 4.057 19 N -0.019 5.019 20 N -0.266 5.266 21 C 0.219 3.781 22 C -0.163 4.163 23 C -0.006 4.006 24 C -0.192 4.192 25 N 0.561 4.439 26 O -0.375 6.375 27 O -0.384 6.384 28 C 0.033 3.967 29 C -0.229 4.229 30 N 0.567 4.433 31 O -0.362 6.362 32 O -0.401 6.401 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.040 0.960 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.274 0.726 46 H 0.202 0.798 47 H 0.185 0.815 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.294 -0.840 12.085 13.221 hybrid contribution -0.198 0.195 0.469 0.546 sum -5.492 -0.645 12.555 13.719 Atomic orbital electron populations 1.22723 0.95159 1.02857 1.03435 1.21130 0.95285 1.00934 0.94509 0.89040 1.21540 0.96290 1.00413 0.95624 1.21576 0.95116 1.00796 0.98542 1.21759 1.01423 0.98940 0.93487 1.20434 0.85764 1.01274 0.96249 0.88381 1.19611 0.96705 0.95107 0.93034 1.20876 1.43162 1.00620 0.88529 0.91411 1.24915 0.95258 0.97309 0.95703 1.69903 1.49430 1.37175 0.97588 0.86935 0.79561 0.86105 0.77551 1.20399 1.21605 1.19144 1.25589 0.96255 0.93639 0.90200 1.74895 0.90632 1.15295 1.21107 1.48242 1.17667 1.23434 1.37222 1.17626 0.83661 0.90455 0.86369 1.21104 1.02081 0.96581 0.96520 1.21155 0.88327 0.97850 0.93253 1.20433 0.93920 1.02213 1.02678 1.43252 1.00965 0.99772 0.99893 1.94549 1.83899 1.14819 1.44282 1.94537 1.13027 1.58432 1.72374 1.20217 0.98362 0.91083 0.87033 1.20055 0.98757 0.95589 1.08477 1.43183 1.00192 1.00851 0.99053 1.94547 1.09985 1.61552 1.70118 1.94123 1.40913 1.66131 1.38902 0.91386 0.90009 0.91956 0.91770 0.91361 0.91828 0.91585 0.91808 0.91064 0.95967 0.96214 0.92856 0.72633 0.79791 0.81529 0.80597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 7.82 37.15 0.29 -1.89 16 2 C -0.10 -1.15 2.91 -91.38 -0.27 -1.42 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.10 -0.98 5.04 -26.63 -0.13 -1.11 16 5 C -0.12 -1.17 5.81 -26.78 -0.16 -1.33 16 6 C -0.12 -1.41 5.23 -26.64 -0.14 -1.55 16 7 C -0.02 -0.26 2.42 -91.38 -0.22 -0.48 16 8 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 9 C -0.01 -0.14 3.19 -27.88 -0.09 -0.23 16 10 C -0.49 -12.11 8.10 -34.44 -0.28 -12.39 16 11 H 0.07 1.85 7.77 -52.49 -0.41 1.45 16 12 C 0.07 1.81 5.47 -17.82 -0.10 1.71 16 13 N -0.90 -25.65 13.96 55.43 0.77 -24.87 16 14 Si 0.87 19.87 27.47 -169.99 -4.67 15.21 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 18 C 0.14 2.06 5.87 -78.35 -0.46 1.60 16 19 N -0.22 -3.73 7.48 35.88 0.27 -3.47 16 20 N -0.54 -8.67 4.07 32.42 0.13 -8.54 16 21 C 0.34 5.29 6.71 -83.78 -0.56 4.72 16 22 C -0.14 -2.16 9.51 -39.37 -0.37 -2.54 16 23 C 0.02 0.21 9.55 -39.61 -0.38 -0.16 16 24 C -0.11 -1.47 6.85 -79.90 -0.55 -2.02 16 25 N 0.04 0.66 4.45 33.99 0.15 0.81 16 26 O -0.16 -2.51 18.44 -29.46 -0.54 -3.06 16 27 O -0.17 -2.62 18.44 -29.46 -0.54 -3.16 16 28 C 0.05 0.71 9.06 -39.62 -0.36 0.35 16 29 C -0.14 -1.97 6.86 -79.73 -0.55 -2.52 16 30 N 0.06 0.86 4.45 34.07 0.15 1.01 16 31 O -0.14 -2.06 18.47 -29.46 -0.54 -2.60 16 32 O -0.21 -3.12 13.70 -29.46 -0.40 -3.53 16 33 H 0.07 0.68 7.82 -51.93 -0.41 0.28 16 34 H 0.08 1.02 4.23 -51.93 -0.22 0.80 16 35 H 0.06 0.83 5.86 -51.93 -0.30 0.53 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.02 0.45 7.20 -51.92 -0.37 0.08 16 43 H 0.02 0.40 7.48 -51.93 -0.39 0.01 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.41 6.27 2.38 -182.98 -0.44 5.84 16 46 H 0.18 3.14 7.37 -52.49 -0.39 2.75 16 47 H 0.17 2.02 7.60 -52.49 -0.40 1.63 16 48 H 0.18 2.04 7.17 -52.48 -0.38 1.67 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -28.42 390.41 -9.91 -38.33 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.25 Total: 7.24 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -4.32 Total: -19.25 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 1.48 Total: -35.06 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -2.03 Total: -12.35 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.21 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.42 -9.91 -38.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004114483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.673 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds