Wall clock time and date at job start Tue Mar 31 2020 06:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39482 * 120.27666 * 2 1 4 4 C 1.43201 * 120.64050 * 359.97438 * 3 2 1 5 5 N 3.49163 * 81.02176 * 359.97438 * 2 1 3 6 6 C 1.46702 * 118.70993 * 179.97438 * 3 2 1 7 7 N 1.32017 * 131.56698 * 179.97438 * 6 3 2 8 8 C 1.35432 * 109.67748 * 180.02562 * 7 6 3 9 9 C 1.39957 * 133.26753 * 180.02562 * 8 7 6 10 10 C 1.36577 * 119.88971 * 179.97438 * 9 8 7 11 11 C 1.38768 * 120.67582 * 359.97438 * 10 9 8 12 12 C 1.37941 * 120.45678 * 0.03556 * 11 10 9 13 13 C 1.38729 * 119.73015 * 359.96371 * 12 11 10 14 14 N 1.37376 * 118.97023 * 359.97438 * 6 3 2 15 15 C 1.36609 * 120.52123 * 0.02562 * 14 6 3 16 16 N 1.37397 * 119.25559 * 179.97438 * 15 14 6 17 17 C 1.47013 * 110.99689 * 61.82158 * 16 15 14 18 18 C 1.53103 * 109.25899 * 177.60489 * 17 16 15 19 19 O 1.43018 * 109.25498 * 56.84822 * 18 17 16 20 20 C 1.43012 * 113.74123 * 301.33291 * 19 18 17 21 21 C 1.47010 * 111.00208 * 298.19157 * 16 15 14 22 22 C 1.37708 * 121.49014 * 359.73426 * 15 14 6 23 23 C 1.50696 * 119.57349 * 180.26652 * 22 15 14 24 24 C 1.50703 * 109.46982 * 270.25858 * 23 22 15 25 25 H 1.08000 * 120.00249 * 0.02562 * 24 23 22 26 26 C 1.37881 * 119.99844 * 179.97438 * 24 23 22 27 27 N 1.31515 * 119.99939 * 359.97438 * 26 24 23 28 28 Si 1.86797 * 119.99845 * 180.02562 * 26 24 23 29 29 H 1.48494 * 109.47460 * 90.00116 * 28 26 24 30 30 H 1.48503 * 109.46771 * 210.00250 * 28 26 24 31 31 H 1.48500 * 109.47213 * 329.99542 * 28 26 24 32 32 H 1.08993 * 109.47223 * 90.00504 * 1 2 3 33 33 H 1.09003 * 109.47216 * 330.00456 * 1 2 3 34 34 H 1.09003 * 109.47173 * 210.00830 * 1 2 3 35 35 H 1.08002 * 120.05235 * 0.02660 * 9 8 7 36 36 H 1.08006 * 119.66415 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.77292 * 180.02562 * 11 10 9 38 38 H 1.07999 * 120.13218 * 179.97438 * 12 11 10 39 39 H 1.08998 * 109.50947 * 297.54089 * 17 16 15 40 40 H 1.09000 * 109.50734 * 57.67414 * 17 16 15 41 41 H 1.09006 * 109.50780 * 296.91908 * 18 17 16 42 42 H 1.08993 * 109.54346 * 176.80885 * 18 17 16 43 43 H 1.09007 * 109.50625 * 298.73684 * 20 19 18 44 44 H 1.08998 * 109.54095 * 178.62739 * 20 19 18 45 45 H 1.09004 * 109.50226 * 302.32335 * 21 16 15 46 46 H 1.08991 * 109.51129 * 62.45582 * 21 16 15 47 47 H 1.09000 * 109.46962 * 30.25508 * 23 22 15 48 48 H 1.08998 * 109.47115 * 150.26072 * 23 22 15 49 49 H 0.96998 * 119.99847 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2102 1.2046 0.0000 4 6 1.5142 2.4560 -0.0006 5 7 0.9621 3.4488 -0.0015 6 6 3.6767 1.1645 0.0006 7 7 4.5793 2.1279 0.0003 8 6 5.8217 1.5888 0.0005 9 6 7.1074 2.1418 0.0008 10 6 8.2005 1.3231 0.0016 11 6 8.0517 -0.0566 0.0026 12 6 6.7944 -0.6242 0.0021 13 6 5.6717 0.1906 0.0013 14 7 4.3090 -0.0551 0.0016 15 6 3.5836 -1.2127 0.0016 16 7 4.2427 -2.4182 0.0021 17 6 5.0636 -2.5692 1.2123 18 6 5.7315 -3.9468 1.2009 19 8 6.5009 -4.0881 0.0036 20 6 5.7327 -3.9473 -1.1944 21 6 5.0649 -2.5697 -1.2071 22 6 2.2066 -1.1986 0.0060 23 6 1.4495 -2.5016 0.0119 24 6 1.1981 -2.9429 -1.4070 25 1 1.5516 -2.3404 -2.2306 26 6 0.5177 -4.1165 -1.6536 27 7 0.0886 -4.8511 -0.6507 28 14 0.2068 -4.6639 -3.4123 29 1 1.3351 -5.5119 -3.8737 30 1 -1.0554 -5.4440 -3.4721 31 1 0.0932 -3.4709 -4.2893 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3634 0.8900 0.5138 34 1 -0.3634 -0.8899 0.5140 35 1 7.2348 3.2143 0.0013 36 1 9.1910 1.7538 0.0022 37 1 8.9262 -0.6904 0.0036 38 1 6.6847 -1.6986 0.0024 39 1 5.8293 -1.7937 1.2319 40 1 4.4307 -2.4790 2.0951 41 1 4.9664 -4.7226 1.2355 42 1 6.3857 -4.0421 2.0674 43 1 4.9676 -4.7230 -1.2294 44 1 6.3874 -4.0425 -2.0606 45 1 4.4327 -2.4799 -2.0906 46 1 5.8305 -1.7943 -1.2263 47 1 2.0362 -3.2603 0.5298 48 1 0.4971 -2.3661 0.5243 49 1 -0.3904 -5.6765 -0.8242 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004114920.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:19 Heat of formation + Delta-G solvation = 133.245706 kcal Electronic energy + Delta-G solvation = -35971.116738 eV Core-core repulsion = 31673.022601 eV Total energy + Delta-G solvation = -4298.094136 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.99117 -39.94469 -38.90328 -36.86594 -36.82374 -35.56165 -33.43774 -32.88566 -31.50329 -31.29302 -30.79845 -29.56423 -27.75281 -27.46238 -26.40890 -24.16076 -23.77764 -23.04991 -22.63729 -22.02994 -21.58807 -19.81139 -18.56016 -17.82514 -17.44213 -16.72449 -16.63045 -16.31616 -16.01582 -15.65906 -15.45150 -15.28614 -14.89313 -14.76848 -14.59290 -14.46648 -14.17359 -13.80938 -13.35078 -13.12285 -12.96453 -12.73597 -12.62794 -12.56014 -12.37481 -12.23896 -12.09637 -11.88934 -11.81898 -11.62265 -11.47025 -11.43446 -11.22733 -10.97683 -10.86192 -10.68570 -10.55591 -10.21202 -10.01581 -9.86561 -9.82132 -9.48642 -8.84502 -8.64511 -8.50341 -8.29305 -7.26793 -6.18407 -4.21694 0.21002 0.80364 1.42499 2.25718 2.27215 2.91210 2.95729 3.18968 3.27799 3.30317 3.39382 3.71872 3.79415 3.83617 3.88249 4.01978 4.31118 4.47166 4.72190 4.78504 4.85876 4.88989 4.93950 5.01579 5.13160 5.16735 5.19030 5.21812 5.23478 5.35329 5.41477 5.50917 5.55090 5.61769 5.68030 5.74335 5.77045 5.82790 5.89635 5.92876 6.14820 6.17907 6.32046 6.39518 6.41276 6.43052 6.60744 6.62088 6.73695 6.84552 7.04810 7.29650 7.36260 7.53974 7.68748 7.75137 7.84676 8.11462 8.79750 9.41644 10.90832 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007732 B = 0.004802 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.427200 B = 5828.995208 C = 8489.079151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.067 3.933 3 C -0.068 4.068 4 C 0.286 3.714 5 N -0.423 5.423 6 C 0.334 3.666 7 N -0.512 5.512 8 C 0.100 3.900 9 C -0.086 4.086 10 C -0.107 4.107 11 C -0.124 4.124 12 C -0.110 4.110 13 C -0.003 4.003 14 N -0.409 5.409 15 C 0.287 3.713 16 N -0.455 5.455 17 C -0.017 4.017 18 C 0.067 3.933 19 O -0.386 6.386 20 C 0.066 3.934 21 C -0.009 4.009 22 C -0.057 4.057 23 C 0.070 3.930 24 C -0.505 4.505 25 H 0.053 0.947 26 C 0.067 3.933 27 N -0.889 5.889 28 Si 0.888 3.112 29 H -0.281 1.281 30 H -0.286 1.286 31 H -0.274 1.274 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.154 0.846 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.039 0.961 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.965 2.548 3.224 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.058 3.942 3 C -0.075 4.075 4 C -0.028 4.028 5 N -0.099 5.099 6 C 0.082 3.918 7 N -0.234 5.234 8 C -0.021 4.021 9 C -0.105 4.105 10 C -0.127 4.127 11 C -0.144 4.144 12 C -0.129 4.129 13 C -0.109 4.109 14 N -0.090 5.090 15 C 0.091 3.909 16 N -0.177 5.177 17 C -0.143 4.143 18 C -0.010 4.010 19 O -0.305 6.305 20 C -0.011 4.011 21 C -0.134 4.134 22 C -0.062 4.062 23 C 0.033 3.967 24 C -0.543 4.543 25 H 0.071 0.929 26 C -0.135 4.135 27 N -0.527 5.527 28 Si 0.716 3.284 29 H -0.207 1.207 30 H -0.212 1.212 31 H -0.199 1.199 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.171 0.829 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.057 0.943 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.821 4.293 3.265 12.994 hybrid contribution 0.473 -0.884 -1.096 1.485 sum 12.294 3.409 2.169 12.941 Atomic orbital electron populations 1.21090 0.88276 1.04121 1.04655 1.20371 0.97613 0.89446 0.86732 1.15671 0.85390 0.87956 1.18527 1.24612 0.92976 0.91888 0.93350 1.81175 1.09066 1.09668 1.10018 1.21426 0.92271 0.79539 0.98551 1.70887 0.97130 1.27724 1.27630 1.19080 0.92849 0.88799 1.01420 1.20017 0.88481 1.00216 1.01836 1.20691 0.98317 0.93415 1.00291 1.20880 0.96004 0.95027 1.02460 1.20892 0.89905 1.00297 1.01800 1.18798 0.82327 0.96826 1.12933 1.43933 1.05669 1.08184 1.51206 1.19336 0.91294 0.79273 1.01010 1.59409 1.29820 1.25339 1.03104 1.23483 0.97542 1.00075 0.93153 1.22643 0.95538 0.95039 0.87761 1.87948 1.35645 1.92766 1.14101 1.22678 0.95550 0.95418 0.87433 1.23416 0.97192 0.99625 0.93210 1.20134 0.88568 0.98573 0.98945 1.18312 0.94074 0.85792 0.98571 1.20829 1.36189 1.06534 0.90746 0.92921 1.24866 0.95580 0.96352 0.96737 1.69919 1.38020 1.14384 1.30391 0.86658 0.77815 0.78847 0.85112 1.20667 1.21173 1.19911 0.88527 0.91579 0.87921 0.85228 0.85310 0.85103 0.82882 0.91037 0.88900 0.91132 0.88112 0.90813 0.88067 0.88206 0.91284 0.93107 0.94301 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.23 36.01 0.33 -1.50 16 2 C 0.07 1.11 5.94 -103.96 -0.62 0.49 16 3 C -0.07 -1.16 5.95 -104.09 -0.62 -1.78 16 4 C 0.29 4.94 13.95 -22.47 -0.31 4.62 16 5 N -0.42 -7.67 18.54 41.84 0.78 -6.89 16 6 C 0.33 6.01 7.73 -153.83 -1.19 4.82 16 7 N -0.51 -9.47 11.33 -8.76 -0.10 -9.57 16 8 C 0.10 1.65 7.21 -84.74 -0.61 1.03 16 9 C -0.09 -1.12 10.06 -39.54 -0.40 -1.52 16 10 C -0.11 -1.13 9.96 -39.99 -0.40 -1.53 16 11 C -0.12 -1.35 10.03 -39.49 -0.40 -1.75 16 12 C -0.11 -1.44 6.23 -39.51 -0.25 -1.69 16 13 C 0.00 -0.05 5.71 -83.79 -0.48 -0.53 16 14 N -0.41 -6.91 2.91 -57.69 -0.17 -7.07 16 15 C 0.29 4.87 5.30 -153.35 -0.81 4.05 16 16 N -0.45 -7.10 3.41 -172.62 -0.59 -7.69 16 17 C -0.02 -0.22 4.96 -3.71 -0.02 -0.24 16 18 C 0.07 0.78 6.99 37.21 0.26 1.04 16 19 O -0.39 -4.86 10.02 -35.23 -0.35 -5.21 16 20 C 0.07 0.83 6.99 37.21 0.26 1.09 16 21 C -0.01 -0.13 4.96 -3.71 -0.02 -0.15 16 22 C -0.06 -1.03 5.07 -104.62 -0.53 -1.56 16 23 C 0.07 1.44 4.39 -29.04 -0.13 1.31 16 24 C -0.50 -11.71 9.09 -34.44 -0.31 -12.02 16 25 H 0.05 1.24 7.74 -52.49 -0.41 0.84 16 26 C 0.07 1.63 5.46 -17.82 -0.10 1.54 16 27 N -0.89 -22.92 13.29 55.43 0.74 -22.19 16 28 Si 0.89 19.32 29.54 -169.99 -5.02 14.30 16 29 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 30 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 31 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 32 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.07 0.87 7.13 -51.93 -0.37 0.50 16 34 H 0.10 1.54 5.94 -51.93 -0.31 1.23 16 35 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.15 1.95 2.78 -52.49 -0.15 1.81 16 39 H 0.07 0.95 3.53 -51.93 -0.18 0.76 16 40 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 44 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.10 1.57 8.13 -51.93 -0.42 1.15 16 46 H 0.07 0.97 3.53 -51.93 -0.18 0.79 16 47 H 0.05 1.14 7.37 -51.93 -0.38 0.75 16 48 H 0.04 0.83 5.93 -51.93 -0.31 0.52 16 49 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -28.25 388.97 -10.84 -39.09 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.65 Total: 3.62 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -6.33 Total: -4.25 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.66 Total: -53.41 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.35 Total: -5.21 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.25 -10.84 -39.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004114920.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.335 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds