Wall clock time and date at job start Tue Mar 31 2020 06:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.47516 * 2 1 4 4 C 1.35989 * 117.00379 * 184.38149 * 3 2 1 5 5 C 1.38569 * 120.07007 * 5.00703 * 4 3 2 6 6 C 1.38245 * 119.99690 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.92471 * 179.97438 * 6 5 4 8 8 H 1.08996 * 107.79074 * 195.77969 * 7 6 5 9 9 N 1.47259 * 107.95583 * 312.15697 * 7 6 5 10 10 C 1.34771 * 118.42195 * 121.88187 * 9 7 6 11 11 O 1.21561 * 118.92376 * 180.02562 * 10 9 7 12 12 N 1.33897 * 122.15006 * 359.97438 * 10 9 7 13 13 C 1.36553 * 123.68098 * 0.04550 * 12 10 9 14 14 C 1.50701 * 119.47016 * 179.97438 * 13 12 10 15 15 C 1.34982 * 121.05526 * 359.93248 * 13 12 10 16 16 C 1.41458 * 121.08762 * 180.08287 * 15 13 12 17 17 O 1.21681 * 120.00230 * 5.78541 * 16 15 13 18 18 O 1.34949 * 120.00108 * 185.78023 * 16 15 13 19 19 C 1.42895 * 117.00207 * 185.07962 * 18 16 15 20 20 C 1.50699 * 109.47219 * 175.15754 * 19 18 16 21 21 H 1.08005 * 119.99873 * 4.99188 * 20 19 18 22 22 C 1.37879 * 120.00128 * 184.98305 * 20 19 18 23 23 N 1.31515 * 119.99779 * 5.05906 * 22 20 19 24 24 Si 1.86802 * 119.99966 * 185.06077 * 22 20 19 25 25 H 1.48507 * 109.47127 * 64.99888 * 24 22 20 26 26 H 1.48494 * 109.47054 * 184.99889 * 24 22 20 27 27 H 1.48500 * 109.47065 * 304.99952 * 24 22 20 28 28 C 1.38246 * 120.14953 * 0.02562 * 6 5 4 29 29 C 1.38247 * 120.14356 * 359.97438 * 28 6 5 30 30 C 1.38565 * 120.00062 * 359.97438 * 29 28 6 31 31 O 1.36000 * 120.07118 * 180.02562 * 30 29 28 32 32 H 1.08995 * 109.47293 * 184.97953 * 1 2 3 33 33 H 1.08999 * 109.46919 * 304.98780 * 1 2 3 34 34 H 1.09002 * 109.46607 * 64.98300 * 1 2 3 35 35 H 1.08999 * 109.47117 * 239.99607 * 2 1 3 36 36 H 1.09006 * 109.46497 * 120.00221 * 2 1 3 37 37 H 1.08003 * 120.00008 * 359.97438 * 5 4 3 38 38 H 0.97001 * 120.79207 * 301.90828 * 9 7 6 39 39 H 0.97003 * 118.16051 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.46474 * 359.97438 * 14 13 12 41 41 H 1.08994 * 109.47193 * 119.99530 * 14 13 12 42 42 H 1.08990 * 109.47396 * 240.00562 * 14 13 12 43 43 H 1.08995 * 109.47051 * 295.16430 * 19 18 16 44 44 H 1.09008 * 109.47002 * 55.16374 * 19 18 16 45 45 H 0.96997 * 119.99653 * 179.97438 * 23 22 20 46 46 H 1.07994 * 119.92694 * 179.70588 * 28 6 5 47 47 H 1.08008 * 119.99582 * 179.97438 * 29 28 6 48 48 H 0.96693 * 113.99715 * 270.00410 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3513 1.5265 -0.0926 5 6 4.1854 0.4370 -0.2856 6 6 5.5524 0.6210 -0.3790 7 6 6.4580 -0.5652 -0.5884 8 1 7.4755 -0.2529 -0.3531 9 7 6.0693 -1.6088 0.3750 10 6 5.7000 -2.8148 -0.1000 11 8 5.3768 -3.6829 0.6872 12 7 5.6765 -3.0876 -1.4106 13 6 6.0192 -2.1868 -2.3779 14 6 5.9587 -2.5960 -3.8271 15 6 6.4106 -0.9355 -2.0569 16 6 6.7641 -0.0012 -3.0585 17 8 6.6184 -0.2839 -4.2330 18 8 7.2630 1.2037 -2.7114 19 6 7.4937 2.1388 -3.7670 20 6 7.9343 3.4565 -3.1834 21 1 8.1065 3.5460 -2.1210 22 6 8.1177 4.5479 -4.0058 23 7 7.8133 4.4675 -5.2827 24 14 8.7986 6.1406 -3.3063 25 1 10.1921 5.9215 -2.8420 26 1 8.7863 7.1884 -4.3584 27 1 7.9587 6.5778 -2.1624 28 6 6.0905 1.8906 -0.2796 29 6 5.2639 2.9818 -0.0870 30 6 3.8928 2.8045 0.0064 31 8 3.0782 3.8771 0.1953 32 1 -0.3633 -1.0237 0.0892 33 1 -0.3633 0.5893 0.8419 34 1 -0.3632 0.4346 -0.9313 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8900 37 1 3.7676 -0.5560 -0.3623 38 1 6.0783 -1.4324 1.3288 39 1 5.4007 -3.9751 -1.6886 40 1 5.6250 -3.6312 -3.8985 41 1 5.2588 -1.9508 -4.3579 42 1 6.9490 -2.5024 -4.2727 43 1 8.2713 1.7560 -4.4280 44 1 6.5734 2.2819 -4.3334 45 1 7.9420 5.2354 -5.8612 46 1 7.1592 2.0296 -0.3483 47 1 5.6869 3.9726 -0.0093 48 1 2.9152 4.0881 1.1248 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004156445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:03 Heat of formation + Delta-G solvation = -146.463693 kcal Electronic energy + Delta-G solvation = -36281.665115 eV Core-core repulsion = 31496.007104 eV Total energy + Delta-G solvation = -4785.658011 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.66152 -40.22671 -39.61277 -37.92382 -37.36365 -36.91127 -35.55168 -34.80623 -32.84504 -32.20937 -31.87733 -30.25649 -29.68416 -28.65393 -27.50977 -25.24121 -24.02447 -23.67005 -22.80861 -21.80383 -21.49658 -21.39945 -19.06232 -18.58566 -18.10262 -17.59438 -17.01431 -16.55162 -16.38605 -16.19009 -16.16745 -16.04423 -15.54933 -15.37347 -15.24175 -14.98591 -14.40133 -14.32100 -13.99719 -13.73837 -13.61689 -13.39537 -13.16360 -13.03958 -12.77214 -12.70517 -12.34488 -12.13587 -12.03386 -11.82608 -11.65479 -11.49195 -11.42802 -11.28594 -11.05939 -10.94677 -10.74324 -10.62455 -10.35712 -10.26055 -9.68587 -9.66231 -9.56008 -9.27169 -8.60083 -8.48686 -8.26301 -7.90476 -6.18572 -4.22695 0.95967 1.32419 1.61029 2.35317 2.77692 3.15751 3.22595 3.26873 3.30977 3.32608 3.44681 3.75484 3.88987 4.28344 4.31300 4.36898 4.62829 4.74792 4.84201 4.95834 5.01380 5.08118 5.10033 5.18075 5.20215 5.35154 5.46159 5.57580 5.59800 5.60767 5.64021 5.73632 5.82186 5.87096 5.99526 6.01870 6.25571 6.29649 6.47011 6.56679 6.62749 6.78650 6.89083 6.94063 7.20080 7.28666 7.31598 7.51290 7.83727 7.88909 8.02957 8.06470 8.63562 8.89918 9.41414 10.92224 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007448 B = 0.004060 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3758.460287 B = 6894.239727 C = 9191.076042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.309 6.309 4 C 0.093 3.907 5 C -0.175 4.175 6 C -0.079 4.079 7 C 0.234 3.766 8 H 0.099 0.901 9 N -0.710 5.710 10 C 0.706 3.294 11 O -0.576 6.576 12 N -0.650 5.650 13 C 0.222 3.778 14 C -0.116 4.116 15 C -0.252 4.252 16 C 0.518 3.482 17 O -0.525 6.525 18 O -0.342 6.342 19 C 0.205 3.795 20 C -0.522 4.522 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.890 5.890 24 Si 0.908 3.092 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.273 1.273 28 C -0.083 4.083 29 C -0.098 4.098 30 C 0.079 3.921 31 O -0.485 6.485 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.120 0.880 38 H 0.431 0.569 39 H 0.426 0.574 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.020 0.980 44 H 0.029 0.971 45 H 0.267 0.733 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.142 -12.315 11.925 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.223 6.223 4 C 0.048 3.952 5 C -0.194 4.194 6 C -0.081 4.081 7 C 0.129 3.871 8 H 0.116 0.884 9 N -0.369 5.369 10 C 0.406 3.594 11 O -0.454 6.454 12 N -0.293 5.293 13 C 0.119 3.881 14 C -0.172 4.172 15 C -0.260 4.260 16 C 0.365 3.635 17 O -0.419 6.419 18 O -0.257 6.257 19 C 0.133 3.867 20 C -0.560 4.560 21 H 0.088 0.912 22 C -0.140 4.140 23 N -0.527 5.527 24 Si 0.734 3.266 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.198 1.198 28 C -0.101 4.101 29 C -0.116 4.116 30 C 0.033 3.967 31 O -0.294 6.294 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.138 0.862 38 H 0.272 0.728 39 H 0.265 0.735 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.037 0.963 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.159 0.841 47 H 0.157 0.843 48 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -8.463 -12.459 11.230 18.787 hybrid contribution 0.280 0.550 0.628 0.880 sum -8.183 -11.909 11.858 18.692 Atomic orbital electron populations 1.21754 0.92810 1.02615 1.03536 1.22733 0.95824 0.82479 1.01097 1.86128 1.18944 1.28501 1.88698 1.19259 0.82664 0.93467 0.99840 1.20732 0.93557 0.97501 1.07630 1.19835 0.93024 0.94898 1.00347 1.18559 0.98225 0.84296 0.85988 0.88360 1.45394 1.70896 1.10229 1.10417 1.15735 0.78128 0.83553 0.81957 1.91034 1.54635 1.45724 1.53964 1.42253 1.66077 1.16669 1.04324 1.20127 0.88033 0.88421 0.91537 1.21270 1.06267 1.01151 0.88549 1.18956 1.19300 0.94352 0.93430 1.18480 0.75535 0.82589 0.86857 1.90834 1.52408 1.78763 1.19917 1.86141 1.73246 1.22806 1.43537 1.20475 0.97029 0.84760 0.84455 1.20882 1.46842 0.93088 0.95142 0.91238 1.24915 0.95345 0.98948 0.94824 1.69969 1.46695 1.31559 1.04523 0.86402 0.79572 0.81906 0.78684 1.20013 1.21117 1.19778 1.20907 1.01061 0.90449 0.97727 1.21284 0.91083 1.00213 0.99063 1.17801 0.88947 0.83834 1.06077 1.84938 1.67848 1.46212 1.30357 0.90577 0.91499 0.91523 0.92403 0.92386 0.86221 0.72804 0.73528 0.91903 0.87477 0.87954 0.96260 0.95338 0.92360 0.84140 0.84313 0.76552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.05 0.60 5.52 37.16 0.21 0.80 16 3 O -0.31 -4.48 9.92 -34.21 -0.34 -4.82 16 4 C 0.09 1.43 6.69 -39.12 -0.26 1.17 16 5 C -0.18 -2.50 8.32 -39.46 -0.33 -2.82 16 6 C -0.08 -1.14 4.26 -104.62 -0.45 -1.58 16 7 C 0.23 3.03 3.11 -69.41 -0.22 2.82 16 8 H 0.10 1.23 7.85 -51.93 -0.41 0.82 16 9 N -0.71 -7.87 4.81 -60.29 -0.29 -8.16 16 10 C 0.71 8.57 8.63 -87.71 -0.76 7.81 16 11 O -0.58 -8.46 17.94 5.31 0.10 -8.36 16 12 N -0.65 -6.66 5.14 -12.88 -0.07 -6.72 16 13 C 0.22 2.65 6.84 -81.65 -0.56 2.09 16 14 C -0.12 -1.23 8.40 36.01 0.30 -0.93 16 15 C -0.25 -3.72 5.27 -104.15 -0.55 -4.27 16 16 C 0.52 9.94 7.37 31.96 0.24 10.18 16 17 O -0.53 -10.96 12.88 -19.41 -0.25 -11.21 16 18 O -0.34 -7.39 7.21 -41.18 -0.30 -7.69 16 19 C 0.20 5.35 5.16 36.01 0.19 5.54 16 20 C -0.52 -14.03 9.43 -34.44 -0.32 -14.35 16 21 H 0.07 1.76 7.82 -52.48 -0.41 1.35 16 22 C 0.06 1.71 5.45 -17.82 -0.10 1.61 16 23 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 24 Si 0.91 20.74 29.54 -169.99 -5.02 15.71 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 C -0.08 -1.28 7.96 -39.57 -0.32 -1.59 16 29 C -0.10 -1.54 9.98 -39.46 -0.39 -1.94 16 30 C 0.08 1.24 6.72 -39.12 -0.26 0.98 16 31 O -0.49 -7.21 13.29 -34.24 -0.46 -7.67 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.65 7.17 -51.93 -0.37 0.27 16 36 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 37 H 0.12 1.59 6.12 -52.48 -0.32 1.27 16 38 H 0.43 4.05 8.93 -40.82 -0.36 3.68 16 39 H 0.43 3.26 8.44 -40.82 -0.34 2.91 16 40 H 0.06 0.44 7.85 -51.93 -0.41 0.03 16 41 H 0.11 1.34 7.09 -51.93 -0.37 0.97 16 42 H 0.10 1.20 7.41 -51.93 -0.38 0.82 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.03 0.83 8.07 -51.92 -0.42 0.41 16 45 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.14 2.17 7.57 -52.49 -0.40 1.77 16 47 H 0.14 2.09 8.06 -52.48 -0.42 1.67 16 48 H 0.38 3.60 9.06 45.56 0.41 4.01 16 LS Contribution 405.14 15.07 6.11 6.11 Total: -1.00 -34.78 405.14 -8.43 -43.21 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -5.45 Total: 10.15 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -3.20 Total: 4.59 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.38 Total: -40.03 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -1.25 Total: -39.74 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.78 -8.43 -43.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004156445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.256 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds