Wall clock time and date at job start Tue Mar 31 2020 06:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.47516 * 2 1 4 4 C 1.35989 * 117.00379 * 184.38149 * 3 2 1 5 5 C 1.38569 * 120.07007 * 5.00703 * 4 3 2 6 6 C 1.38245 * 119.99690 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.92471 * 179.97438 * 6 5 4 8 8 H 1.08996 * 107.79074 * 195.77969 * 7 6 5 9 9 N 1.47259 * 107.95583 * 312.15697 * 7 6 5 10 10 C 1.34771 * 118.42195 * 121.88187 * 9 7 6 11 11 O 1.21561 * 118.92376 * 180.02562 * 10 9 7 12 12 N 1.33897 * 122.15006 * 359.97438 * 10 9 7 13 13 C 1.36553 * 123.68098 * 0.04550 * 12 10 9 14 14 C 1.50701 * 119.47016 * 179.97438 * 13 12 10 15 15 C 1.34982 * 121.05526 * 359.93248 * 13 12 10 16 16 C 1.41458 * 121.08762 * 180.08287 * 15 13 12 17 17 O 1.21681 * 120.00230 * 5.78541 * 16 15 13 18 18 O 1.34949 * 120.00108 * 185.78023 * 16 15 13 19 19 C 1.42895 * 117.00207 * 185.07962 * 18 16 15 20 20 C 1.50699 * 109.47219 * 175.15754 * 19 18 16 21 21 H 1.08005 * 119.99873 * 4.99188 * 20 19 18 22 22 C 1.37879 * 120.00128 * 184.98305 * 20 19 18 23 23 N 1.31515 * 119.99779 * 5.05906 * 22 20 19 24 24 Si 1.86802 * 119.99966 * 185.06077 * 22 20 19 25 25 H 1.48507 * 109.47127 * 64.99888 * 24 22 20 26 26 H 1.48494 * 109.47054 * 184.99889 * 24 22 20 27 27 H 1.48500 * 109.47065 * 304.99952 * 24 22 20 28 28 C 1.38246 * 120.14953 * 0.02562 * 6 5 4 29 29 C 1.38247 * 120.14356 * 359.97438 * 28 6 5 30 30 C 1.38565 * 120.00062 * 359.97438 * 29 28 6 31 31 O 1.36000 * 120.07118 * 180.02562 * 30 29 28 32 32 H 1.08995 * 109.47293 * 184.97953 * 1 2 3 33 33 H 1.08999 * 109.46919 * 304.98780 * 1 2 3 34 34 H 1.09002 * 109.46607 * 64.98300 * 1 2 3 35 35 H 1.08999 * 109.47117 * 239.99607 * 2 1 3 36 36 H 1.09006 * 109.46497 * 120.00221 * 2 1 3 37 37 H 1.08003 * 120.00008 * 359.97438 * 5 4 3 38 38 H 0.97001 * 120.79207 * 301.90828 * 9 7 6 39 39 H 0.97003 * 118.16051 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.46474 * 359.97438 * 14 13 12 41 41 H 1.08994 * 109.47193 * 119.99530 * 14 13 12 42 42 H 1.08990 * 109.47396 * 240.00562 * 14 13 12 43 43 H 1.08995 * 109.47051 * 295.16430 * 19 18 16 44 44 H 1.09008 * 109.47002 * 55.16374 * 19 18 16 45 45 H 0.96997 * 119.99653 * 179.97438 * 23 22 20 46 46 H 1.07994 * 119.92694 * 179.70588 * 28 6 5 47 47 H 1.08008 * 119.99582 * 179.97438 * 29 28 6 48 48 H 0.96693 * 113.99715 * 270.00410 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3513 1.5265 -0.0926 5 6 4.1854 0.4370 -0.2856 6 6 5.5524 0.6210 -0.3790 7 6 6.4580 -0.5652 -0.5884 8 1 7.4755 -0.2529 -0.3531 9 7 6.0693 -1.6088 0.3750 10 6 5.7000 -2.8148 -0.1000 11 8 5.3768 -3.6829 0.6872 12 7 5.6765 -3.0876 -1.4106 13 6 6.0192 -2.1868 -2.3779 14 6 5.9587 -2.5960 -3.8271 15 6 6.4106 -0.9355 -2.0569 16 6 6.7641 -0.0012 -3.0585 17 8 6.6184 -0.2839 -4.2330 18 8 7.2630 1.2037 -2.7114 19 6 7.4937 2.1388 -3.7670 20 6 7.9343 3.4565 -3.1834 21 1 8.1065 3.5460 -2.1210 22 6 8.1177 4.5479 -4.0058 23 7 7.8133 4.4675 -5.2827 24 14 8.7986 6.1406 -3.3063 25 1 10.1921 5.9215 -2.8420 26 1 8.7863 7.1884 -4.3584 27 1 7.9587 6.5778 -2.1624 28 6 6.0905 1.8906 -0.2796 29 6 5.2639 2.9818 -0.0870 30 6 3.8928 2.8045 0.0064 31 8 3.0782 3.8771 0.1953 32 1 -0.3633 -1.0237 0.0892 33 1 -0.3633 0.5893 0.8419 34 1 -0.3632 0.4346 -0.9313 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8900 37 1 3.7676 -0.5560 -0.3623 38 1 6.0783 -1.4324 1.3288 39 1 5.4007 -3.9751 -1.6886 40 1 5.6250 -3.6312 -3.8985 41 1 5.2588 -1.9508 -4.3579 42 1 6.9490 -2.5024 -4.2727 43 1 8.2713 1.7560 -4.4280 44 1 6.5734 2.2819 -4.3334 45 1 7.9420 5.2354 -5.8612 46 1 7.1592 2.0296 -0.3483 47 1 5.6869 3.9726 -0.0093 48 1 2.9152 4.0881 1.1248 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004156445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:01 Heat of formation + Delta-G solvation = -171.126256 kcal Electronic energy + Delta-G solvation = -36282.734564 eV Core-core repulsion = 31496.007104 eV Total energy + Delta-G solvation = -4786.727460 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.75482 -41.32642 -41.10814 -39.00912 -38.57399 -38.09414 -37.10551 -35.86706 -34.90791 -33.32478 -32.75582 -31.35267 -30.78832 -30.10628 -29.16754 -26.35068 -25.44779 -24.79090 -24.16223 -22.96887 -22.86935 -22.48849 -20.41511 -19.70947 -19.24008 -18.71653 -18.53000 -17.94101 -17.87929 -17.40319 -17.30766 -17.14398 -16.83109 -16.70418 -16.63088 -16.31447 -15.99770 -15.43456 -15.07703 -14.86418 -14.79858 -14.58840 -14.34742 -14.18918 -14.00573 -13.77923 -13.52486 -13.45831 -13.32158 -13.11998 -12.98363 -12.92836 -12.73132 -12.50494 -12.44953 -12.24974 -12.13687 -11.73115 -11.69502 -11.52905 -11.46130 -11.33987 -11.10960 -10.71554 -10.56456 -9.75278 -9.38644 -9.05339 -8.28799 -6.41512 -0.20355 0.17123 0.43490 1.35650 1.44783 1.48893 1.56499 1.70895 2.02536 2.13660 2.18153 2.31009 2.55678 2.64110 3.06743 3.22020 3.25746 3.55981 3.87677 3.93125 3.95582 3.99291 4.06153 4.15161 4.27686 4.31528 4.42165 4.55321 4.56794 4.63511 4.66406 4.82767 4.86031 4.87520 4.88290 4.99515 5.08073 5.08830 5.19442 5.24140 5.38840 5.54021 5.55298 5.58555 5.74950 5.81046 5.83521 6.12466 6.18117 6.29451 6.67842 6.89779 7.05703 7.07539 7.30540 8.83528 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007448 B = 0.004060 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3758.460287 B = 6894.239727 C = 9191.076042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 O -0.323 6.323 4 C 0.084 3.916 5 C -0.172 4.172 6 C -0.078 4.078 7 C 0.246 3.754 8 H 0.103 0.897 9 N -0.696 5.696 10 C 0.708 3.292 11 O -0.594 6.594 12 N -0.631 5.631 13 C 0.266 3.734 14 C -0.118 4.118 15 C -0.289 4.289 16 C 0.514 3.486 17 O -0.552 6.552 18 O -0.340 6.340 19 C 0.225 3.775 20 C -0.535 4.535 21 H 0.083 0.917 22 C 0.008 3.992 23 N -0.932 5.932 24 Si 0.980 3.020 25 H -0.261 1.261 26 H -0.285 1.285 27 H -0.260 1.260 28 C -0.095 4.095 29 C -0.112 4.112 30 C 0.066 3.934 31 O -0.500 6.500 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.440 0.560 39 H 0.442 0.558 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.093 0.907 43 H -0.007 1.007 44 H -0.011 1.011 45 H 0.269 0.731 46 H 0.136 0.864 47 H 0.139 0.861 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 -13.860 13.638 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.238 6.238 4 C 0.039 3.961 5 C -0.191 4.191 6 C -0.080 4.080 7 C 0.140 3.860 8 H 0.121 0.879 9 N -0.356 5.356 10 C 0.408 3.592 11 O -0.473 6.473 12 N -0.275 5.275 13 C 0.160 3.840 14 C -0.174 4.174 15 C -0.297 4.297 16 C 0.363 3.637 17 O -0.447 6.447 18 O -0.256 6.256 19 C 0.152 3.848 20 C -0.572 4.572 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.571 5.571 24 Si 0.803 3.197 25 H -0.185 1.185 26 H -0.210 1.210 27 H -0.185 1.185 28 C -0.113 4.113 29 C -0.130 4.130 30 C 0.021 3.979 31 O -0.311 6.311 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.283 0.717 39 H 0.285 0.715 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.010 0.990 44 H 0.007 0.993 45 H 0.078 0.922 46 H 0.154 0.846 47 H 0.157 0.843 48 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.921 -14.050 12.999 21.118 hybrid contribution 0.303 0.834 0.093 0.892 sum -8.618 -13.216 13.092 20.502 Atomic orbital electron populations 1.21787 0.91034 1.04224 1.03254 1.23019 0.97265 0.81073 1.01533 1.86118 1.18397 1.30678 1.88583 1.19393 0.83341 0.93584 0.99832 1.20825 0.93357 0.97779 1.07117 1.19970 0.93372 0.95033 0.99634 1.18360 0.98175 0.84090 0.85357 0.87916 1.45288 1.70158 1.09485 1.10648 1.15787 0.77854 0.83404 0.82171 1.91044 1.55453 1.46282 1.54476 1.42205 1.64698 1.17063 1.03543 1.20224 0.83992 0.87361 0.92425 1.21313 1.05468 1.03678 0.86957 1.18579 1.23121 0.94744 0.93301 1.19086 0.74775 0.82084 0.87708 1.90823 1.53713 1.78947 1.21197 1.86136 1.74248 1.23600 1.41581 1.19891 0.94100 0.85954 0.84839 1.21253 1.46640 0.93440 0.95874 0.89906 1.25951 0.95254 1.02865 0.94990 1.70119 1.47958 1.32824 1.06183 0.85273 0.79443 0.76908 0.78118 1.18542 1.21034 1.18458 1.20945 1.00880 0.91053 0.98445 1.21375 0.91439 1.00437 0.99749 1.17928 0.89070 0.84400 1.06487 1.84864 1.67676 1.46048 1.32559 0.88055 0.91271 0.92246 0.92642 0.91127 0.85041 0.71655 0.71508 0.87180 0.89083 0.88831 0.98958 0.99282 0.92231 0.84591 0.84312 0.74098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 10.28 71.98 0.74 -1.53 16 2 C 0.05 0.94 5.52 71.98 0.40 1.34 16 3 O -0.32 -9.17 9.92 -79.56 -0.79 -9.96 16 4 C 0.08 2.56 6.69 22.57 0.15 2.71 16 5 C -0.17 -4.76 8.32 22.35 0.19 -4.57 16 6 C -0.08 -2.21 4.26 -19.86 -0.08 -2.30 16 7 C 0.25 6.07 3.11 43.62 0.14 6.21 16 8 H 0.10 2.47 7.85 -2.39 -0.02 2.45 16 9 N -0.70 -13.85 4.81 -462.94 -2.23 -16.08 16 10 C 0.71 15.05 8.63 179.33 1.55 16.59 16 11 O -0.59 -15.59 17.94 -3.91 -0.07 -15.66 16 12 N -0.63 -10.81 5.14 -313.43 -1.61 -12.42 16 13 C 0.27 5.75 6.84 41.08 0.28 6.03 16 14 C -0.12 -2.25 8.40 71.24 0.60 -1.65 16 15 C -0.29 -8.29 5.27 -19.56 -0.10 -8.39 16 16 C 0.51 20.18 7.37 68.61 0.51 20.69 16 17 O -0.55 -23.85 12.88 19.24 0.25 -23.60 16 18 O -0.34 -15.25 7.21 -58.66 -0.42 -15.67 16 19 C 0.23 12.38 5.16 71.24 0.37 12.75 16 20 C -0.53 -29.46 9.43 25.60 0.24 -29.22 16 21 H 0.08 4.24 7.82 -2.91 -0.02 4.21 16 22 C 0.01 0.46 5.45 84.66 0.46 0.92 16 23 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 24 Si 0.98 42.59 29.54 68.60 2.03 44.61 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 28 C -0.09 -2.96 7.96 22.27 0.18 -2.78 16 29 C -0.11 -3.59 9.98 22.35 0.22 -3.36 16 30 C 0.07 2.12 6.72 22.57 0.15 2.27 16 31 O -0.50 -14.91 13.29 -79.69 -1.06 -15.97 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.15 7.17 -2.39 -0.02 1.14 16 36 H 0.07 1.26 8.09 -2.38 -0.02 1.24 16 37 H 0.13 3.25 6.12 -2.91 -0.02 3.23 16 38 H 0.44 7.25 8.93 -92.71 -0.83 6.42 16 39 H 0.44 4.89 8.44 -92.71 -0.78 4.10 16 40 H 0.11 1.07 7.85 -2.39 -0.02 1.05 16 41 H 0.09 2.18 7.09 -2.39 -0.02 2.17 16 42 H 0.09 2.09 7.41 -2.39 -0.02 2.07 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H -0.01 -0.67 8.07 -2.38 -0.02 -0.69 16 45 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.14 4.30 7.57 -2.91 -0.02 4.27 16 47 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 48 H 0.40 7.50 9.06 -74.06 -0.67 6.83 16 Total: -1.00 -77.60 405.14 1.14 -76.47 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -1.22 Total: 28.14 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 5.98 Total: 15.71 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -3.55 Total: -84.07 kcal Atomic # 8 Polarization: -78.77 SS G_CDS: -2.09 Total: -80.86 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -77.60 1.14 -76.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004156445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.660 kcal (2) G-P(sol) polarization free energy of solvation -77.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds