Wall clock time and date at job start Tue Mar 31 2020 06:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.46983 * 2 1 4 4 C 1.35995 * 116.99905 * 184.67905 * 3 2 1 5 5 C 1.38566 * 120.07607 * 354.63155 * 4 3 2 6 6 C 1.38236 * 120.00131 * 179.69887 * 5 4 3 7 7 C 1.50702 * 119.92908 * 180.29593 * 6 5 4 8 8 H 1.09001 * 107.78835 * 349.73242 * 7 6 5 9 9 N 1.47267 * 107.95573 * 233.38938 * 7 6 5 10 10 C 1.34770 * 118.42024 * 238.11289 * 9 7 6 11 11 O 1.21549 * 118.92607 * 179.97438 * 10 9 7 12 12 N 1.33901 * 122.15003 * 0.02562 * 10 9 7 13 13 C 1.36558 * 123.67910 * 0.02562 * 12 10 9 14 14 C 1.50700 * 119.46647 * 180.02562 * 13 12 10 15 15 C 1.35047 * 121.07485 * 359.97438 * 13 12 10 16 16 C 1.41458 * 121.13579 * 179.97438 * 15 13 12 17 17 O 1.21677 * 119.99720 * 101.84346 * 16 15 13 18 18 O 1.34936 * 120.00129 * 281.84636 * 16 15 13 19 19 C 1.42896 * 117.00334 * 185.38709 * 18 16 15 20 20 C 1.50702 * 109.47153 * 184.58226 * 19 18 16 21 21 H 1.07997 * 120.00121 * 4.89163 * 20 19 18 22 22 C 1.37874 * 119.99606 * 184.90191 * 20 19 18 23 23 N 1.31506 * 120.00424 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99720 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46960 * 59.99592 * 24 22 20 26 26 H 1.48506 * 109.46788 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47019 * 299.99711 * 24 22 20 28 28 C 1.38253 * 120.14892 * 0.59688 * 6 5 4 29 29 C 1.38246 * 120.14272 * 359.67204 * 28 6 5 30 30 C 1.38569 * 119.99847 * 0.03092 * 29 28 6 31 31 O 1.35989 * 120.07088 * 180.02562 * 30 29 28 32 32 H 1.08999 * 109.47482 * 299.99916 * 1 2 3 33 33 H 1.08997 * 109.47404 * 60.00416 * 1 2 3 34 34 H 1.09004 * 109.46802 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47482 * 240.00083 * 2 1 3 36 36 H 1.09005 * 109.47259 * 119.99308 * 2 1 3 37 37 H 1.08006 * 119.99511 * 359.97438 * 5 4 3 38 38 H 0.97001 * 120.78928 * 58.13640 * 9 7 6 39 39 H 0.96996 * 118.15988 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.46664 * 273.48651 * 14 13 12 41 41 H 1.08999 * 109.46960 * 33.48007 * 14 13 12 42 42 H 1.08997 * 109.47701 * 153.48493 * 14 13 12 43 43 H 1.09007 * 109.46503 * 304.57448 * 19 18 16 44 44 H 1.08995 * 109.47283 * 64.57282 * 19 18 16 45 45 H 0.97008 * 120.00523 * 180.02562 * 23 22 20 46 46 H 1.07998 * 119.92991 * 179.70501 * 28 6 5 47 47 H 1.07994 * 120.00135 * 180.02562 * 29 28 6 48 48 H 0.96703 * 114.00466 * 269.97456 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3507 1.5269 -0.0988 5 6 4.2005 0.4326 -0.0817 6 6 5.5664 0.6164 -0.1886 7 6 6.4888 -0.5753 -0.1765 8 1 5.9008 -1.4486 0.1062 9 7 7.5027 -0.3541 0.8684 10 6 8.8023 -0.3552 0.5115 11 8 9.6469 -0.1730 1.3664 12 7 9.1934 -0.5494 -0.7543 13 6 8.3290 -0.7613 -1.7900 14 6 8.8738 -0.9699 -3.1795 15 6 6.9938 -0.7879 -1.5892 16 6 6.0971 -1.0067 -2.6612 17 8 5.5902 -2.1019 -2.8164 18 8 5.8040 -0.0009 -3.5116 19 6 4.8028 -0.2568 -4.4986 20 6 4.6912 0.9302 -5.4204 21 1 5.3746 1.7601 -5.3174 22 6 3.7165 0.9566 -6.3952 23 7 2.8845 -0.0541 -6.5209 24 14 3.5776 2.4283 -7.5374 25 1 4.8455 2.5895 -8.2933 26 1 2.4583 2.2122 -8.4892 27 1 3.3188 3.6526 -6.7380 28 6 6.0888 1.8916 -0.3002 29 6 5.2469 2.9881 -0.3124 30 6 3.8763 2.8103 -0.2118 31 8 3.0468 3.8878 -0.2241 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5137 0.8901 37 1 3.7954 -0.5643 0.0106 38 1 7.2415 -0.2113 1.7915 39 1 10.1441 -0.5390 -0.9464 40 1 9.0185 -0.0032 -3.6619 41 1 9.8282 -1.4931 -3.1208 42 1 8.1688 -1.5642 -3.7608 43 1 5.0785 -1.1399 -5.0752 44 1 3.8445 -0.4276 -4.0083 45 1 2.1989 -0.0356 -7.2069 46 1 7.1568 2.0314 -0.3787 47 1 5.6573 3.9831 -0.4001 48 1 2.8640 4.2536 0.6522 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004156446.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:06 Heat of formation + Delta-G solvation = -148.340093 kcal Electronic energy + Delta-G solvation = -36066.428976 eV Core-core repulsion = 31280.689598 eV Total energy + Delta-G solvation = -4785.739378 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.61149 -40.28815 -39.63939 -37.96457 -37.39608 -36.80191 -35.64626 -34.81785 -32.90038 -32.34028 -31.80669 -30.67056 -29.52200 -28.57755 -27.64673 -25.28017 -24.01695 -23.80153 -22.80994 -21.75269 -21.59473 -21.44818 -18.91032 -18.65183 -18.35648 -17.62454 -16.90940 -16.81820 -16.41420 -16.19523 -16.10933 -16.05980 -15.84153 -15.29725 -15.11573 -15.04203 -14.54228 -14.37281 -13.98924 -13.92941 -13.68079 -13.45279 -13.12724 -13.01673 -12.66998 -12.63072 -12.42439 -12.14115 -12.04832 -11.95902 -11.66451 -11.54695 -11.41155 -11.24523 -11.09448 -10.93825 -10.70041 -10.60955 -10.49275 -10.34437 -9.93722 -9.65891 -9.63535 -9.33016 -8.77072 -8.48742 -8.22433 -7.99802 -6.20175 -4.25024 1.07827 1.37525 1.44049 2.39005 2.51156 2.86539 3.18083 3.27749 3.31266 3.34146 3.39503 3.69610 3.85956 4.20221 4.27776 4.36133 4.53477 4.77216 4.91627 4.96250 5.00450 5.06696 5.16464 5.21343 5.25016 5.26790 5.37826 5.43830 5.48280 5.50728 5.73115 5.75827 5.79371 5.83956 5.87697 6.01540 6.11984 6.14891 6.29937 6.49427 6.54415 6.67923 6.71514 6.83988 7.21349 7.24255 7.29003 7.43932 7.79544 7.80619 8.01671 8.08172 8.56823 8.86905 9.39824 10.90382 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.006216 B = 0.004407 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4503.649857 B = 6352.272765 C = 8836.758713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.306 6.306 4 C 0.112 3.888 5 C -0.176 4.176 6 C -0.079 4.079 7 C 0.244 3.756 8 H 0.091 0.909 9 N -0.709 5.709 10 C 0.710 3.290 11 O -0.577 6.577 12 N -0.650 5.650 13 C 0.189 3.811 14 C -0.130 4.130 15 C -0.238 4.238 16 C 0.528 3.472 17 O -0.511 6.511 18 O -0.338 6.338 19 C 0.202 3.798 20 C -0.524 4.524 21 H 0.069 0.931 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.909 3.091 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.107 4.107 29 C -0.103 4.103 30 C 0.083 3.917 31 O -0.483 6.483 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.132 0.868 38 H 0.431 0.569 39 H 0.425 0.575 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.024 0.976 44 H 0.026 0.974 45 H 0.267 0.733 46 H 0.121 0.879 47 H 0.136 0.864 48 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 0.515 15.766 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.219 6.219 4 C 0.066 3.934 5 C -0.196 4.196 6 C -0.081 4.081 7 C 0.139 3.861 8 H 0.109 0.891 9 N -0.369 5.369 10 C 0.410 3.590 11 O -0.454 6.454 12 N -0.294 5.294 13 C 0.087 3.913 14 C -0.187 4.187 15 C -0.246 4.246 16 C 0.371 3.629 17 O -0.401 6.401 18 O -0.253 6.253 19 C 0.130 3.870 20 C -0.562 4.562 21 H 0.088 0.912 22 C -0.140 4.140 23 N -0.529 5.529 24 Si 0.736 3.264 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.198 1.198 28 C -0.125 4.125 29 C -0.122 4.122 30 C 0.038 3.962 31 O -0.291 6.291 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.150 0.850 38 H 0.273 0.727 39 H 0.264 0.736 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.042 0.958 44 H 0.044 0.956 45 H 0.077 0.923 46 H 0.139 0.861 47 H 0.153 0.847 48 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.252 0.267 15.405 16.278 hybrid contribution -0.145 0.488 -0.116 0.522 sum 5.107 0.755 15.289 16.137 Atomic orbital electron populations 1.21750 0.92657 1.02832 1.03459 1.22849 0.96086 0.81931 1.01597 1.86123 1.18530 1.29305 1.87987 1.19277 0.83040 0.93557 0.97514 1.20969 0.93083 0.98209 1.07290 1.19877 0.93100 0.94850 1.00289 1.18337 0.87082 0.95795 0.84880 0.89101 1.45278 1.03409 1.76672 1.11556 1.15651 0.83633 0.77511 0.82225 1.91029 1.50358 1.56339 1.47683 1.42029 1.11164 1.70738 1.05462 1.19781 0.89210 0.92329 0.89948 1.21151 1.02533 1.04790 0.90267 1.18959 0.91972 1.19912 0.93792 1.18664 0.79543 0.83331 0.81399 1.90867 1.51021 1.25505 1.72716 1.86284 1.56250 1.40463 1.42265 1.20535 0.84246 0.98151 0.84060 1.20917 1.16778 1.03795 1.14734 0.91234 1.24910 0.94825 0.96842 0.97380 1.69958 1.18403 1.30602 1.33930 0.86368 0.77822 0.82194 0.80012 1.19876 1.20990 1.19775 1.20549 0.99551 0.91169 1.01263 1.21163 0.91338 0.99860 0.99826 1.17758 0.88766 0.84124 1.05550 1.84952 1.66742 1.44185 1.33241 0.91833 0.91185 0.90369 0.91385 0.92289 0.85022 0.72728 0.73605 0.88245 0.90022 0.89019 0.95783 0.95582 0.92316 0.86124 0.84661 0.76416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.15 0.38 -1.20 16 2 C 0.05 0.64 5.47 37.15 0.20 0.84 16 3 O -0.31 -4.73 9.92 -34.23 -0.34 -5.07 16 4 C 0.11 1.77 6.69 -39.12 -0.26 1.50 16 5 C -0.18 -2.58 8.63 -39.46 -0.34 -2.92 16 6 C -0.08 -1.12 4.38 -104.62 -0.46 -1.57 16 7 C 0.24 3.19 3.36 -69.41 -0.23 2.95 16 8 H 0.09 1.13 7.80 -51.93 -0.41 0.73 16 9 N -0.71 -7.88 5.01 -60.29 -0.30 -8.18 16 10 C 0.71 8.82 8.63 -87.71 -0.76 8.06 16 11 O -0.58 -8.65 17.94 5.32 0.10 -8.56 16 12 N -0.65 -6.95 5.14 -12.87 -0.07 -7.02 16 13 C 0.19 2.34 6.84 -81.62 -0.56 1.78 16 14 C -0.13 -1.40 9.69 36.01 0.35 -1.05 16 15 C -0.24 -3.63 5.01 -104.12 -0.52 -4.15 16 16 C 0.53 10.44 4.99 31.96 0.16 10.60 16 17 O -0.51 -11.39 16.77 -19.40 -0.33 -11.72 16 18 O -0.34 -7.75 10.09 -41.14 -0.41 -8.16 16 19 C 0.20 5.44 5.23 36.01 0.19 5.63 16 20 C -0.52 -14.83 9.43 -34.44 -0.32 -15.16 16 21 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -26.15 13.28 55.43 0.74 -25.41 16 24 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 C -0.11 -1.48 9.25 -39.57 -0.37 -1.84 16 29 C -0.10 -1.44 9.98 -39.46 -0.39 -1.83 16 30 C 0.08 1.27 6.72 -39.12 -0.26 1.01 16 31 O -0.48 -6.92 13.29 -34.21 -0.45 -7.37 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.96 7.63 -51.93 -0.40 0.57 16 36 H 0.06 0.61 7.70 -51.93 -0.40 0.21 16 37 H 0.13 1.75 6.19 -52.48 -0.33 1.43 16 38 H 0.43 3.96 8.93 -40.82 -0.36 3.59 16 39 H 0.43 3.45 8.65 -40.82 -0.35 3.10 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.22 6.88 -51.93 -0.36 0.86 16 43 H 0.02 0.69 7.95 -51.93 -0.41 0.27 16 44 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.12 1.57 8.04 -52.49 -0.42 1.14 16 47 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 48 H 0.38 3.34 9.07 45.56 0.41 3.75 16 LS Contribution 414.23 15.07 6.24 6.24 Total: -1.00 -36.54 414.23 -8.67 -45.22 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.53 Total: 9.33 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -3.29 Total: 4.33 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.37 Total: -40.61 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -1.44 Total: -40.88 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.54 -8.67 -45.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004156446.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.125 kcal (2) G-P(sol) polarization free energy of solvation -36.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds