Wall clock time and date at job start Tue Mar 31 2020 06:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.46983 * 2 1 4 4 C 1.35995 * 116.99905 * 184.67905 * 3 2 1 5 5 C 1.38566 * 120.07607 * 354.63155 * 4 3 2 6 6 C 1.38236 * 120.00131 * 179.69887 * 5 4 3 7 7 C 1.50702 * 119.92908 * 180.29593 * 6 5 4 8 8 H 1.09001 * 107.78835 * 349.73242 * 7 6 5 9 9 N 1.47267 * 107.95573 * 233.38938 * 7 6 5 10 10 C 1.34770 * 118.42024 * 238.11289 * 9 7 6 11 11 O 1.21549 * 118.92607 * 179.97438 * 10 9 7 12 12 N 1.33901 * 122.15003 * 0.02562 * 10 9 7 13 13 C 1.36558 * 123.67910 * 0.02562 * 12 10 9 14 14 C 1.50700 * 119.46647 * 180.02562 * 13 12 10 15 15 C 1.35047 * 121.07485 * 359.97438 * 13 12 10 16 16 C 1.41458 * 121.13579 * 179.97438 * 15 13 12 17 17 O 1.21677 * 119.99720 * 101.84346 * 16 15 13 18 18 O 1.34936 * 120.00129 * 281.84636 * 16 15 13 19 19 C 1.42896 * 117.00334 * 185.38709 * 18 16 15 20 20 C 1.50702 * 109.47153 * 184.58226 * 19 18 16 21 21 H 1.07997 * 120.00121 * 4.89163 * 20 19 18 22 22 C 1.37874 * 119.99606 * 184.90191 * 20 19 18 23 23 N 1.31506 * 120.00424 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99720 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46960 * 59.99592 * 24 22 20 26 26 H 1.48506 * 109.46788 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47019 * 299.99711 * 24 22 20 28 28 C 1.38253 * 120.14892 * 0.59688 * 6 5 4 29 29 C 1.38246 * 120.14272 * 359.67204 * 28 6 5 30 30 C 1.38569 * 119.99847 * 0.03092 * 29 28 6 31 31 O 1.35989 * 120.07088 * 180.02562 * 30 29 28 32 32 H 1.08999 * 109.47482 * 299.99916 * 1 2 3 33 33 H 1.08997 * 109.47404 * 60.00416 * 1 2 3 34 34 H 1.09004 * 109.46802 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47482 * 240.00083 * 2 1 3 36 36 H 1.09005 * 109.47259 * 119.99308 * 2 1 3 37 37 H 1.08006 * 119.99511 * 359.97438 * 5 4 3 38 38 H 0.97001 * 120.78928 * 58.13640 * 9 7 6 39 39 H 0.96996 * 118.15988 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.46664 * 273.48651 * 14 13 12 41 41 H 1.08999 * 109.46960 * 33.48007 * 14 13 12 42 42 H 1.08997 * 109.47701 * 153.48493 * 14 13 12 43 43 H 1.09007 * 109.46503 * 304.57448 * 19 18 16 44 44 H 1.08995 * 109.47283 * 64.57282 * 19 18 16 45 45 H 0.97008 * 120.00523 * 180.02562 * 23 22 20 46 46 H 1.07998 * 119.92991 * 179.70501 * 28 6 5 47 47 H 1.07994 * 120.00135 * 180.02562 * 29 28 6 48 48 H 0.96703 * 114.00466 * 269.97456 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3507 1.5269 -0.0988 5 6 4.2005 0.4326 -0.0817 6 6 5.5664 0.6164 -0.1886 7 6 6.4888 -0.5753 -0.1765 8 1 5.9008 -1.4486 0.1062 9 7 7.5027 -0.3541 0.8684 10 6 8.8023 -0.3552 0.5115 11 8 9.6469 -0.1730 1.3664 12 7 9.1934 -0.5494 -0.7543 13 6 8.3290 -0.7613 -1.7900 14 6 8.8738 -0.9699 -3.1795 15 6 6.9938 -0.7879 -1.5892 16 6 6.0971 -1.0067 -2.6612 17 8 5.5902 -2.1019 -2.8164 18 8 5.8040 -0.0009 -3.5116 19 6 4.8028 -0.2568 -4.4986 20 6 4.6912 0.9302 -5.4204 21 1 5.3746 1.7601 -5.3174 22 6 3.7165 0.9566 -6.3952 23 7 2.8845 -0.0541 -6.5209 24 14 3.5776 2.4283 -7.5374 25 1 4.8455 2.5895 -8.2933 26 1 2.4583 2.2122 -8.4892 27 1 3.3188 3.6526 -6.7380 28 6 6.0888 1.8916 -0.3002 29 6 5.2469 2.9881 -0.3124 30 6 3.8763 2.8103 -0.2118 31 8 3.0468 3.8878 -0.2241 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5137 0.8901 37 1 3.7954 -0.5643 0.0106 38 1 7.2415 -0.2113 1.7915 39 1 10.1441 -0.5390 -0.9464 40 1 9.0185 -0.0032 -3.6619 41 1 9.8282 -1.4931 -3.1208 42 1 8.1688 -1.5642 -3.7608 43 1 5.0785 -1.1399 -5.0752 44 1 3.8445 -0.4276 -4.0083 45 1 2.1989 -0.0356 -7.2069 46 1 7.1568 2.0314 -0.3787 47 1 5.6573 3.9831 -0.4001 48 1 2.8640 4.2536 0.6522 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004156446.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:05 Heat of formation + Delta-G solvation = -174.696666 kcal Electronic energy + Delta-G solvation = -36067.571883 eV Core-core repulsion = 31280.689598 eV Total energy + Delta-G solvation = -4786.882285 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.72153 -41.38140 -41.24121 -39.07825 -38.56689 -37.88981 -37.42824 -35.85487 -35.01388 -33.51893 -32.78493 -31.72816 -30.58773 -30.11490 -29.29137 -26.47197 -25.38012 -25.00951 -24.28414 -22.96304 -22.79479 -22.64478 -20.36666 -19.76459 -19.45893 -18.75518 -18.63910 -18.29926 -17.80527 -17.53813 -17.23154 -17.21416 -16.95141 -16.77572 -16.54941 -16.35284 -16.18400 -15.53974 -15.08647 -15.00345 -14.70554 -14.60375 -14.46202 -14.36545 -14.10429 -13.67977 -13.63718 -13.49037 -13.39392 -13.11913 -13.11055 -13.02629 -12.79747 -12.58259 -12.40384 -12.28495 -12.22013 -11.76438 -11.73298 -11.67903 -11.62669 -11.56778 -11.42023 -10.69243 -10.64934 -9.87388 -9.32634 -9.12107 -8.36019 -6.51172 -0.02378 0.24601 0.31644 0.97712 1.38644 1.41664 1.45001 1.52822 1.84337 2.12575 2.20643 2.30446 2.47708 2.61922 2.98785 3.16031 3.24408 3.46706 3.71924 3.87270 3.96103 3.99174 4.02783 4.14605 4.15776 4.28600 4.31029 4.37822 4.48025 4.55226 4.58244 4.72636 4.78513 4.81490 4.87614 4.91959 4.95493 5.02378 5.05006 5.16074 5.20980 5.39416 5.41688 5.63213 5.66145 5.71985 5.81784 5.95978 6.21405 6.23645 6.56543 6.86653 6.88804 7.11678 7.20960 8.75739 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.006216 B = 0.004407 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4503.649857 B = 6352.272765 C = 8836.758713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 O -0.322 6.322 4 C 0.090 3.910 5 C -0.186 4.186 6 C -0.084 4.084 7 C 0.257 3.743 8 H 0.094 0.906 9 N -0.694 5.694 10 C 0.711 3.289 11 O -0.596 6.596 12 N -0.634 5.634 13 C 0.229 3.771 14 C -0.135 4.135 15 C -0.284 4.284 16 C 0.541 3.459 17 O -0.542 6.542 18 O -0.343 6.343 19 C 0.222 3.778 20 C -0.548 4.548 21 H 0.074 0.926 22 C 0.012 3.988 23 N -0.927 5.927 24 Si 0.982 3.018 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.268 1.268 28 C -0.108 4.108 29 C -0.106 4.106 30 C 0.070 3.930 31 O -0.498 6.498 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.441 0.559 39 H 0.441 0.559 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.064 0.936 43 H 0.000 1.000 44 H -0.008 1.008 45 H 0.272 0.728 46 H 0.133 0.867 47 H 0.157 0.843 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.287 1.664 16.188 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.236 6.236 4 C 0.044 3.956 5 C -0.205 4.205 6 C -0.086 4.086 7 C 0.151 3.849 8 H 0.112 0.888 9 N -0.354 5.354 10 C 0.411 3.589 11 O -0.475 6.475 12 N -0.278 5.278 13 C 0.126 3.874 14 C -0.191 4.191 15 C -0.293 4.293 16 C 0.385 3.615 17 O -0.433 6.433 18 O -0.258 6.258 19 C 0.149 3.851 20 C -0.585 4.585 21 H 0.092 0.908 22 C -0.187 4.187 23 N -0.565 5.565 24 Si 0.804 3.196 25 H -0.181 1.181 26 H -0.201 1.201 27 H -0.193 1.193 28 C -0.127 4.127 29 C -0.124 4.124 30 C 0.024 3.976 31 O -0.310 6.310 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.154 0.846 38 H 0.285 0.715 39 H 0.283 0.717 40 H 0.129 0.871 41 H 0.143 0.857 42 H 0.083 0.917 43 H 0.018 0.982 44 H 0.010 0.990 45 H 0.081 0.919 46 H 0.150 0.850 47 H 0.174 0.826 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 7.183 1.413 15.879 17.485 hybrid contribution -0.664 0.077 -0.188 0.694 sum 6.519 1.490 15.691 17.056 Atomic orbital electron populations 1.21781 0.91037 1.04204 1.03255 1.23043 0.97417 0.81041 1.01528 1.86094 1.18653 1.30715 1.88167 1.19568 0.83341 0.94259 0.98475 1.21111 0.93553 0.98326 1.07538 1.20043 0.93004 0.95521 1.00014 1.18117 0.87094 0.95463 0.84179 0.88827 1.45162 1.02707 1.75919 1.11645 1.15717 0.83596 0.77248 0.82353 1.91036 1.50891 1.57295 1.48291 1.41959 1.11812 1.69432 1.04570 1.19896 0.88381 0.88255 0.90911 1.21286 1.03787 1.05478 0.88586 1.18598 0.92317 1.25066 0.93270 1.19219 0.79100 0.82053 0.81098 1.90841 1.52542 1.26601 1.73350 1.86281 1.55335 1.41823 1.42330 1.19971 0.83719 0.97105 0.84306 1.21239 1.17517 1.04197 1.15551 0.90781 1.25944 0.94001 0.99932 0.98834 1.70085 1.18949 1.32754 1.34716 0.85251 0.78638 0.77949 0.77764 1.18105 1.20136 1.19288 1.20723 1.00124 0.91017 1.00839 1.21422 0.90850 1.00973 0.99184 1.18004 0.89488 0.84233 1.05849 1.84876 1.66750 1.43953 1.35405 0.90351 0.92971 0.88221 0.93929 0.89822 0.84593 0.71491 0.71665 0.87120 0.85714 0.91747 0.98216 0.99030 0.91886 0.84952 0.82587 0.73877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 10.28 71.98 0.74 -2.37 16 2 C 0.04 1.17 5.47 71.98 0.39 1.56 16 3 O -0.32 -10.34 9.92 -79.63 -0.79 -11.13 16 4 C 0.09 2.90 6.69 22.57 0.15 3.06 16 5 C -0.19 -5.61 8.63 22.35 0.19 -5.42 16 6 C -0.08 -2.35 4.38 -19.86 -0.09 -2.43 16 7 C 0.26 6.50 3.36 43.62 0.15 6.65 16 8 H 0.09 2.30 7.80 -2.39 -0.02 2.28 16 9 N -0.69 -14.09 5.01 -462.93 -2.32 -16.41 16 10 C 0.71 15.79 8.63 179.33 1.55 17.33 16 11 O -0.60 -16.30 17.94 -3.87 -0.07 -16.37 16 12 N -0.63 -11.58 5.14 -313.39 -1.61 -13.19 16 13 C 0.23 5.19 6.84 41.09 0.28 5.47 16 14 C -0.13 -2.58 9.69 71.24 0.69 -1.89 16 15 C -0.28 -8.49 5.01 -19.54 -0.10 -8.58 16 16 C 0.54 21.96 4.99 68.61 0.34 22.30 16 17 O -0.54 -25.28 16.77 19.26 0.32 -24.95 16 18 O -0.34 -16.23 10.09 -58.52 -0.59 -16.82 16 19 C 0.22 12.56 5.23 71.24 0.37 12.93 16 20 C -0.55 -31.65 9.43 25.60 0.24 -31.40 16 21 H 0.07 4.11 7.81 -2.91 -0.02 4.09 16 22 C 0.01 0.71 5.46 84.66 0.46 1.17 16 23 N -0.93 -55.66 13.28 21.44 0.28 -55.38 16 24 Si 0.98 43.61 29.54 68.60 2.03 45.64 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 28 C -0.11 -2.90 9.25 22.28 0.21 -2.69 16 29 C -0.11 -2.87 9.98 22.35 0.22 -2.65 16 30 C 0.07 2.14 6.72 22.57 0.15 2.29 16 31 O -0.50 -14.24 13.29 -79.56 -1.06 -15.30 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.04 1.31 7.63 -2.39 -0.02 1.29 16 36 H 0.08 1.74 7.70 -2.38 -0.02 1.72 16 37 H 0.14 3.81 6.19 -2.91 -0.02 3.79 16 38 H 0.44 7.25 8.93 -92.71 -0.83 6.42 16 39 H 0.44 5.44 8.65 -92.71 -0.80 4.64 16 40 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 1.67 6.88 -2.39 -0.02 1.65 16 43 H 0.00 0.00 7.95 -2.38 -0.02 -0.02 16 44 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 45 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 46 H 0.13 3.17 8.04 -2.91 -0.02 3.14 16 47 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 48 H 0.40 6.91 9.07 -74.05 -0.67 6.23 16 Total: -1.00 -81.40 414.23 0.91 -80.49 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: -1.25 Total: 28.11 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 5.96 Total: 15.31 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.65 Total: -84.98 kcal Atomic # 8 Polarization: -82.39 SS G_CDS: -2.18 Total: -84.57 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -81.40 0.91 -80.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004156446.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.205 kcal (2) G-P(sol) polarization free energy of solvation -81.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds