Wall clock time and date at job start Tue Mar 31 2020 06:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34754 * 117.00228 * 2 1 4 4 O 1.21519 * 119.99885 * 359.97438 * 3 2 1 5 5 C 1.47438 * 120.00710 * 179.97438 * 3 2 1 6 6 C 1.39819 * 120.08423 * 180.02562 * 5 3 2 7 7 C 1.37618 * 119.92528 * 180.02562 * 6 5 3 8 8 C 1.39172 * 120.07983 * 359.97438 * 7 6 5 9 9 N 1.39331 * 119.92737 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00026 * 135.82172 * 9 8 7 11 11 S 1.71200 * 120.00123 * 4.11684 * 10 9 8 12 12 N 1.34780 * 120.00239 * 184.10839 * 10 9 8 13 13 C 1.46496 * 119.99599 * 5.89494 * 12 10 9 14 14 C 1.50697 * 109.47093 * 269.99385 * 13 12 10 15 15 H 1.08002 * 120.00289 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00213 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99832 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00166 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46975 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47350 * 120.00407 * 18 16 14 21 21 H 1.48505 * 109.46938 * 240.00117 * 18 16 14 22 22 C 1.46493 * 120.00180 * 185.88817 * 12 10 9 23 23 C 1.53006 * 109.47448 * 236.54375 * 22 12 10 24 24 C 1.52995 * 109.47043 * 180.02562 * 23 22 12 25 25 C 1.52999 * 109.47538 * 60.00064 * 24 23 22 26 26 C 1.52997 * 109.46804 * 300.00058 * 25 24 23 27 27 C 1.52997 * 109.47485 * 59.99758 * 26 25 24 28 28 C 1.39178 * 120.15417 * 0.27223 * 8 7 6 29 29 C 1.37630 * 120.07733 * 359.45269 * 28 8 7 30 30 H 1.09000 * 109.47626 * 300.00368 * 1 2 3 31 31 H 1.09004 * 109.46903 * 60.00349 * 1 2 3 32 32 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 33 33 H 1.08008 * 120.03441 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.96639 * 179.97438 * 7 6 5 35 35 H 0.96996 * 120.00282 * 315.83027 * 9 8 7 36 36 H 1.08998 * 109.47685 * 29.99478 * 13 12 10 37 37 H 1.09005 * 109.47136 * 149.99571 * 13 12 10 38 38 H 0.96998 * 119.99665 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.47309 * 356.54409 * 22 12 10 40 40 H 1.09001 * 109.46893 * 300.00289 * 23 22 12 41 41 H 1.08998 * 109.46644 * 60.00464 * 23 22 12 42 42 H 1.09001 * 109.47285 * 299.99771 * 24 23 22 43 43 H 1.08999 * 109.46714 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.47342 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.47071 * 59.99577 * 25 24 23 46 46 H 1.09004 * 109.47400 * 299.99466 * 26 25 24 47 47 H 1.09004 * 109.46979 * 179.97438 * 26 25 24 48 48 H 1.08999 * 109.47079 * 179.97438 * 27 26 25 49 49 H 1.09001 * 109.47161 * 60.00009 * 27 26 25 50 50 H 1.07998 * 119.96032 * 179.70381 * 28 8 7 51 51 H 1.07999 * 120.04146 * 180.27062 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2198 -0.0005 5 6 3.5361 1.2779 0.0006 6 6 4.1726 2.5229 0.0011 7 6 5.5471 2.5912 0.0011 8 6 6.3035 1.4230 0.0011 9 7 7.6949 1.4959 0.0006 10 6 8.4120 0.6954 0.8139 11 16 7.6203 -0.4835 1.7701 12 7 9.7524 0.8229 0.8744 13 6 10.4175 1.9133 0.1570 14 6 10.7765 1.4548 -1.2329 15 1 10.5332 0.4515 -1.5503 16 6 11.4147 2.3163 -2.0998 17 7 11.7106 3.5382 -1.7135 18 14 11.8591 1.7481 -3.8229 19 1 11.4214 0.3413 -4.0085 20 1 11.1802 2.6140 -4.8202 21 1 13.3297 1.8372 -4.0096 22 6 10.5441 -0.1289 1.6576 23 6 11.3741 0.6301 2.6950 24 6 12.2013 -0.3639 3.5125 25 6 13.1349 -1.1387 2.5804 26 6 12.3050 -1.8976 1.5430 27 6 11.4777 -0.9037 0.7255 28 6 5.6734 0.1820 -0.0046 29 6 4.2992 0.1062 0.0011 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 3.5861 3.4298 0.0007 34 1 6.0394 3.5525 0.0011 35 1 8.1476 2.1228 -0.5850 36 1 9.7465 2.7700 0.0950 37 1 11.3239 2.1996 0.6906 38 1 12.1600 4.1441 -2.3232 39 1 9.8768 -0.8255 2.1653 40 1 12.0413 1.3267 2.1874 41 1 10.7089 1.1823 3.3589 42 1 11.5344 -1.0608 4.0202 43 1 12.7922 0.1768 4.2518 44 1 13.7246 -1.8465 3.1629 45 1 13.8019 -0.4418 2.0727 46 1 11.6380 -2.5946 2.0506 47 1 12.9701 -2.4493 0.8786 48 1 10.8868 -1.4444 -0.0138 49 1 12.1446 -0.2068 0.2178 50 1 6.2635 -0.7225 -0.0094 51 1 3.8109 -0.8571 0.0011 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004217839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:09 Heat of formation + Delta-G solvation = -54.231607 kcal Electronic energy + Delta-G solvation = -32274.475400 eV Core-core repulsion = 28071.402838 eV Total energy + Delta-G solvation = -4203.072563 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.61621 -39.95525 -38.95506 -37.15896 -36.40945 -34.80902 -33.11171 -31.10727 -30.52684 -30.48944 -29.19782 -28.32410 -27.49506 -24.58934 -23.79877 -22.91289 -22.38686 -22.29740 -20.92897 -20.49210 -19.28375 -18.27970 -18.01862 -17.31423 -17.02796 -16.84932 -16.39503 -15.90122 -15.12240 -15.02902 -14.78523 -14.56763 -14.17120 -14.02487 -13.80885 -13.71223 -13.56404 -13.48010 -13.36189 -12.81979 -12.70154 -12.42287 -12.38695 -12.19058 -11.95794 -11.89133 -11.78699 -11.37019 -11.12736 -11.08264 -11.02026 -10.91199 -10.82252 -10.77098 -10.58191 -10.51142 -10.33920 -10.14427 -9.95492 -9.75842 -9.23699 -8.96535 -8.89934 -8.07504 -7.29242 -6.67119 -6.50986 -4.62857 0.62906 1.54312 1.90183 2.36621 2.62129 2.64349 3.02324 3.03305 3.13377 3.16924 3.75129 3.90567 4.08289 4.73922 4.81859 4.91489 4.95177 4.95885 5.00266 5.02277 5.04695 5.12901 5.33414 5.36413 5.38845 5.49320 5.52491 5.64243 5.73104 5.75244 5.80896 5.89108 5.95336 6.04192 6.11261 6.17508 6.22582 6.24294 6.34022 6.40236 6.41042 6.42975 6.45949 6.48661 6.58824 6.68594 6.74153 6.81458 6.95237 7.14121 7.38538 7.50745 7.58337 7.70387 7.75667 8.45136 9.07399 10.54323 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.009324 B = 0.002693 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.235036 B =10395.476223 C =12349.401691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.514 3.486 4 O -0.515 6.515 5 C -0.142 4.142 6 C -0.048 4.048 7 C -0.144 4.144 8 C 0.185 3.815 9 N -0.635 5.635 10 C 0.571 3.429 11 S -0.691 6.691 12 N -0.524 5.524 13 C 0.217 3.783 14 C -0.548 4.548 15 H 0.069 0.931 16 C 0.071 3.929 17 N -0.884 5.884 18 Si 0.900 3.100 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.131 3.869 23 C -0.125 4.125 24 C -0.111 4.111 25 C -0.120 4.120 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.087 4.087 29 C -0.056 4.056 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.424 0.576 36 H 0.036 0.964 37 H 0.058 0.942 38 H 0.269 0.731 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.084 0.916 50 H 0.161 0.839 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 -5.260 3.849 10.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.360 3.640 4 O -0.405 6.405 5 C -0.144 4.144 6 C -0.068 4.068 7 C -0.165 4.165 8 C 0.089 3.911 9 N -0.264 5.264 10 C 0.209 3.791 11 S -0.558 6.558 12 N -0.224 5.224 13 C 0.095 3.905 14 C -0.587 4.587 15 H 0.087 0.913 16 C -0.134 4.134 17 N -0.520 5.520 18 Si 0.727 3.273 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.027 3.973 23 C -0.163 4.163 24 C -0.149 4.149 25 C -0.158 4.158 26 C -0.152 4.152 27 C -0.160 4.160 28 C -0.110 4.110 29 C -0.076 4.076 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.267 0.733 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.145 0.855 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.178 0.822 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.183 -5.520 4.441 10.824 hybrid contribution 0.846 1.050 -1.761 2.218 sum -7.337 -4.470 2.680 8.999 Atomic orbital electron populations 1.23250 0.76326 1.03625 1.02483 1.86576 1.23270 1.32815 1.84395 1.21247 0.89273 0.81228 0.72235 1.90819 1.66977 1.36047 1.46622 1.19033 0.88499 0.95193 1.11673 1.20846 0.93448 0.96589 0.95884 1.20882 0.93417 0.97481 1.04712 1.17777 0.81304 0.94333 0.97695 1.42259 1.04765 1.39895 1.39460 1.22059 0.85287 0.87166 0.84558 1.92993 1.70760 1.38226 1.53822 1.47723 1.02367 1.28560 1.43750 1.19862 0.94348 0.83623 0.92647 1.21386 1.40819 1.00089 0.96375 0.91332 1.24949 0.94759 0.94586 0.99135 1.69915 1.39767 1.05669 1.36674 0.86386 0.78499 0.79191 0.83243 1.19406 1.20592 1.20563 1.21759 0.93057 0.90860 0.91596 1.21837 0.98705 0.98448 0.97346 1.21440 0.97938 0.97987 0.97552 1.21559 0.97903 0.99043 0.97283 1.21494 0.98381 0.97782 0.97565 1.21850 0.98351 0.98229 0.97568 1.21665 0.94349 0.98491 0.96484 1.21220 0.93082 0.97624 0.95668 0.91925 0.91958 0.88077 0.84491 0.84842 0.73337 0.94664 0.92414 0.92080 0.85523 0.91039 0.91911 0.91750 0.92005 0.92359 0.91835 0.92029 0.92019 0.91917 0.89692 0.82212 0.84387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.35 -4.24 9.81 -40.64 -0.40 -4.64 16 3 C 0.51 7.13 7.89 34.48 0.27 7.40 16 4 O -0.51 -8.05 16.13 -19.28 -0.31 -8.36 16 5 C -0.14 -1.97 5.88 -104.96 -0.62 -2.59 16 6 C -0.05 -0.65 9.58 -39.22 -0.38 -1.02 16 7 C -0.14 -1.99 9.95 -39.46 -0.39 -2.38 16 8 C 0.18 2.91 5.95 -83.76 -0.50 2.41 16 9 N -0.64 -10.86 5.09 -11.40 -0.06 -10.92 16 10 C 0.57 10.67 7.54 -86.92 -0.65 10.02 16 11 S -0.69 -13.74 23.89 -107.50 -2.57 -16.31 16 12 N -0.52 -9.64 2.39 -169.48 -0.40 -10.05 16 13 C 0.22 4.42 4.33 -5.20 -0.02 4.40 16 14 C -0.55 -12.27 7.69 -34.44 -0.26 -12.54 16 15 H 0.07 1.60 7.60 -52.49 -0.40 1.20 16 16 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.88 -21.83 13.29 55.43 0.74 -21.09 16 18 Si 0.90 18.81 29.54 -169.99 -5.02 13.79 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 C 0.13 2.18 2.43 -67.93 -0.16 2.02 16 23 C -0.12 -1.87 5.11 -26.73 -0.14 -2.01 16 24 C -0.11 -1.37 5.92 -26.73 -0.16 -1.53 16 25 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 26 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 27 C -0.12 -1.96 4.57 -26.73 -0.12 -2.08 16 28 C -0.09 -1.36 7.83 -39.45 -0.31 -1.66 16 29 C -0.06 -0.76 9.60 -39.21 -0.38 -1.14 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.14 1.67 7.64 -52.48 -0.40 1.27 16 34 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.42 7.29 6.67 -40.82 -0.27 7.02 16 36 H 0.04 0.75 6.69 -51.93 -0.35 0.40 16 37 H 0.06 1.25 6.25 -51.93 -0.32 0.93 16 38 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 39 H 0.13 2.26 5.81 -47.15 -0.27 1.99 16 40 H 0.07 1.15 6.56 -51.93 -0.34 0.81 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 50 H 0.16 2.72 5.99 -41.39 -0.25 2.47 16 51 H 0.14 1.66 7.60 -52.49 -0.40 1.26 16 LS Contribution 417.25 15.07 6.29 6.29 Total: -1.00 -26.91 417.25 -12.48 -39.39 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.57 Total: 12.92 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -3.17 Total: -1.01 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.27 Total: -42.06 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.71 Total: -13.00 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Atomic # 16 Polarization: -13.74 SS G_CDS: -2.57 Total: -16.31 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -26.91 -12.48 -39.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004217839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.846 kcal (2) G-P(sol) polarization free energy of solvation -26.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds