Wall clock time and date at job start Tue Mar 31 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34754 * 117.00228 * 2 1 4 4 O 1.21519 * 119.99885 * 359.97438 * 3 2 1 5 5 C 1.47438 * 120.00710 * 179.97438 * 3 2 1 6 6 C 1.39819 * 120.08423 * 180.02562 * 5 3 2 7 7 C 1.37618 * 119.92528 * 180.02562 * 6 5 3 8 8 C 1.39172 * 120.07983 * 359.97438 * 7 6 5 9 9 N 1.39331 * 119.92737 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00026 * 135.82172 * 9 8 7 11 11 S 1.71200 * 120.00123 * 4.11684 * 10 9 8 12 12 N 1.34780 * 120.00239 * 184.10839 * 10 9 8 13 13 C 1.46496 * 119.99599 * 5.89494 * 12 10 9 14 14 C 1.50697 * 109.47093 * 269.99385 * 13 12 10 15 15 H 1.08002 * 120.00289 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00213 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99832 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00166 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46975 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47350 * 120.00407 * 18 16 14 21 21 H 1.48505 * 109.46938 * 240.00117 * 18 16 14 22 22 C 1.46493 * 120.00180 * 185.88817 * 12 10 9 23 23 C 1.53006 * 109.47448 * 236.54375 * 22 12 10 24 24 C 1.52995 * 109.47043 * 180.02562 * 23 22 12 25 25 C 1.52999 * 109.47538 * 60.00064 * 24 23 22 26 26 C 1.52997 * 109.46804 * 300.00058 * 25 24 23 27 27 C 1.52997 * 109.47485 * 59.99758 * 26 25 24 28 28 C 1.39178 * 120.15417 * 0.27223 * 8 7 6 29 29 C 1.37630 * 120.07733 * 359.45269 * 28 8 7 30 30 H 1.09000 * 109.47626 * 300.00368 * 1 2 3 31 31 H 1.09004 * 109.46903 * 60.00349 * 1 2 3 32 32 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 33 33 H 1.08008 * 120.03441 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.96639 * 179.97438 * 7 6 5 35 35 H 0.96996 * 120.00282 * 315.83027 * 9 8 7 36 36 H 1.08998 * 109.47685 * 29.99478 * 13 12 10 37 37 H 1.09005 * 109.47136 * 149.99571 * 13 12 10 38 38 H 0.96998 * 119.99665 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.47309 * 356.54409 * 22 12 10 40 40 H 1.09001 * 109.46893 * 300.00289 * 23 22 12 41 41 H 1.08998 * 109.46644 * 60.00464 * 23 22 12 42 42 H 1.09001 * 109.47285 * 299.99771 * 24 23 22 43 43 H 1.08999 * 109.46714 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.47342 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.47071 * 59.99577 * 25 24 23 46 46 H 1.09004 * 109.47400 * 299.99466 * 26 25 24 47 47 H 1.09004 * 109.46979 * 179.97438 * 26 25 24 48 48 H 1.08999 * 109.47079 * 179.97438 * 27 26 25 49 49 H 1.09001 * 109.47161 * 60.00009 * 27 26 25 50 50 H 1.07998 * 119.96032 * 179.70381 * 28 8 7 51 51 H 1.07999 * 120.04146 * 180.27062 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2198 -0.0005 5 6 3.5361 1.2779 0.0006 6 6 4.1726 2.5229 0.0011 7 6 5.5471 2.5912 0.0011 8 6 6.3035 1.4230 0.0011 9 7 7.6949 1.4959 0.0006 10 6 8.4120 0.6954 0.8139 11 16 7.6203 -0.4835 1.7701 12 7 9.7524 0.8229 0.8744 13 6 10.4175 1.9133 0.1570 14 6 10.7765 1.4548 -1.2329 15 1 10.5332 0.4515 -1.5503 16 6 11.4147 2.3163 -2.0998 17 7 11.7106 3.5382 -1.7135 18 14 11.8591 1.7481 -3.8229 19 1 11.4214 0.3413 -4.0085 20 1 11.1802 2.6140 -4.8202 21 1 13.3297 1.8372 -4.0096 22 6 10.5441 -0.1289 1.6576 23 6 11.3741 0.6301 2.6950 24 6 12.2013 -0.3639 3.5125 25 6 13.1349 -1.1387 2.5804 26 6 12.3050 -1.8976 1.5430 27 6 11.4777 -0.9037 0.7255 28 6 5.6734 0.1820 -0.0046 29 6 4.2992 0.1062 0.0011 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 3.5861 3.4298 0.0007 34 1 6.0394 3.5525 0.0011 35 1 8.1476 2.1228 -0.5850 36 1 9.7465 2.7700 0.0950 37 1 11.3239 2.1996 0.6906 38 1 12.1600 4.1441 -2.3232 39 1 9.8768 -0.8255 2.1653 40 1 12.0413 1.3267 2.1874 41 1 10.7089 1.1823 3.3589 42 1 11.5344 -1.0608 4.0202 43 1 12.7922 0.1768 4.2518 44 1 13.7246 -1.8465 3.1629 45 1 13.8019 -0.4418 2.0727 46 1 11.6380 -2.5946 2.0506 47 1 12.9701 -2.4493 0.8786 48 1 10.8868 -1.4444 -0.0138 49 1 12.1446 -0.2068 0.2178 50 1 6.2635 -0.7225 -0.0094 51 1 3.8109 -0.8571 0.0011 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004217839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:08 Heat of formation + Delta-G solvation = -63.336278 kcal Electronic energy + Delta-G solvation = -32274.870209 eV Core-core repulsion = 28071.402838 eV Total energy + Delta-G solvation = -4203.467371 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.74673 -41.24425 -40.16985 -38.36135 -37.46129 -36.14818 -34.86164 -32.24324 -31.69751 -31.66149 -30.60518 -29.76900 -28.38151 -26.12930 -25.12719 -24.15314 -23.53849 -23.48160 -22.09593 -21.79260 -20.53111 -19.59030 -19.14407 -18.80933 -18.52646 -18.06716 -17.35769 -17.19948 -16.72697 -16.28565 -16.15956 -15.64731 -15.49174 -15.32328 -14.95233 -14.86112 -14.78223 -14.53754 -14.50416 -14.21622 -13.84663 -13.75503 -13.54037 -13.46627 -13.17180 -13.09988 -13.01523 -12.93487 -12.74443 -12.48748 -12.39101 -12.24200 -11.98909 -11.87114 -11.80913 -11.79303 -11.66741 -11.37760 -11.21498 -11.12699 -10.73029 -10.55085 -10.11214 -9.40922 -8.86716 -8.32746 -8.18719 -6.48696 -0.55779 0.41289 0.47382 0.85410 1.34552 1.41301 1.45777 1.48946 1.64351 1.72402 2.24403 2.38050 2.75571 2.98516 3.71779 3.73762 3.83850 3.85042 3.93160 4.02795 4.20188 4.24611 4.32633 4.34873 4.36501 4.36969 4.41597 4.51776 4.59097 4.61064 4.64814 4.69788 4.72534 4.85174 4.93524 4.99457 5.06117 5.10140 5.15946 5.21030 5.25486 5.27009 5.30160 5.32271 5.35403 5.41660 5.43718 5.50921 5.57749 5.67798 5.79806 5.83420 6.02436 6.30283 6.62472 6.66351 7.23349 8.71661 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.009324 B = 0.002693 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.235036 B =10395.476223 C =12349.401691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.517 3.483 4 O -0.535 6.535 5 C -0.144 4.144 6 C -0.045 4.045 7 C -0.138 4.138 8 C 0.161 3.839 9 N -0.629 5.629 10 C 0.571 3.429 11 S -0.715 6.715 12 N -0.526 5.526 13 C 0.233 3.767 14 C -0.541 4.541 15 H 0.057 0.943 16 C 0.034 3.966 17 N -0.911 5.911 18 Si 0.951 3.049 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.280 1.280 22 C 0.130 3.870 23 C -0.119 4.119 24 C -0.106 4.106 25 C -0.117 4.117 26 C -0.110 4.110 27 C -0.113 4.113 28 C -0.095 4.095 29 C -0.048 4.048 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.134 0.866 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.422 0.578 36 H 0.029 0.971 37 H 0.046 0.954 38 H 0.270 0.730 39 H 0.119 0.881 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.043 0.957 49 H 0.061 0.939 50 H 0.144 0.856 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 -6.026 4.145 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.364 3.636 4 O -0.427 6.427 5 C -0.146 4.146 6 C -0.064 4.064 7 C -0.158 4.158 8 C 0.067 3.933 9 N -0.257 5.257 10 C 0.208 3.792 11 S -0.583 6.583 12 N -0.226 5.226 13 C 0.111 3.889 14 C -0.580 4.580 15 H 0.076 0.924 16 C -0.168 4.168 17 N -0.549 5.549 18 Si 0.777 3.223 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.205 1.205 22 C 0.027 3.973 23 C -0.158 4.158 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.148 4.148 27 C -0.152 4.152 28 C -0.118 4.118 29 C -0.068 4.068 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.265 0.735 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.137 0.863 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.161 0.839 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.733 -6.306 4.732 11.766 hybrid contribution 0.862 1.260 -1.862 2.408 sum -7.872 -5.046 2.870 9.781 Atomic orbital electron populations 1.23602 0.74215 1.05906 1.02709 1.86563 1.25328 1.31636 1.83774 1.21177 0.89121 0.81518 0.71760 1.90809 1.67355 1.36807 1.47730 1.19191 0.88949 0.95353 1.11087 1.21038 0.93276 0.97126 0.94997 1.21028 0.93551 0.97490 1.03747 1.18013 0.80669 0.95246 0.99403 1.42273 1.05432 1.39188 1.38757 1.22025 0.85280 0.87250 0.84693 1.92953 1.71190 1.39279 1.54849 1.47742 1.02421 1.28511 1.43930 1.19504 0.93689 0.83894 0.91802 1.21433 1.40031 0.99328 0.97161 0.92435 1.25503 0.94932 0.94668 1.01739 1.69983 1.40809 1.06448 1.37628 0.85592 0.78055 0.78478 0.80134 1.19674 1.20466 1.20529 1.21880 0.92914 0.90668 0.91846 1.21797 0.98354 0.98724 0.96879 1.21447 0.97893 0.97569 0.97520 1.21548 0.97627 0.99238 0.96993 1.21488 0.98370 0.97155 0.97745 1.21753 0.97844 0.98180 0.97443 1.21535 0.94998 0.97807 0.97476 1.21326 0.92278 0.98506 0.94669 0.91809 0.91672 0.84841 0.83061 0.83262 0.73526 0.95341 0.93636 0.92042 0.86314 0.92457 0.92530 0.91126 0.90199 0.89713 0.92564 0.91289 0.90893 0.93817 0.91978 0.83887 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.57 113.37 1.20 1.62 16 2 O -0.36 -7.90 9.81 -56.65 -0.56 -8.45 16 3 C 0.52 13.62 7.89 70.25 0.55 14.17 16 4 O -0.54 -16.05 16.13 19.78 0.32 -15.73 16 5 C -0.14 -3.82 5.88 -20.08 -0.12 -3.93 16 6 C -0.05 -1.15 9.58 22.51 0.22 -0.94 16 7 C -0.14 -3.69 9.95 22.35 0.22 -3.47 16 8 C 0.16 5.09 5.95 38.40 0.23 5.32 16 9 N -0.63 -21.86 5.09 -189.97 -0.97 -22.83 16 10 C 0.57 21.76 7.54 179.05 1.35 23.11 16 11 S -0.71 -28.77 23.89 -56.49 -1.35 -30.12 16 12 N -0.53 -19.85 2.39 -690.13 -1.65 -21.50 16 13 C 0.23 9.78 4.33 85.63 0.37 10.15 16 14 C -0.54 -24.66 7.69 25.60 0.20 -24.46 16 15 H 0.06 2.73 7.60 -2.91 -0.02 2.71 16 16 C 0.03 1.60 5.46 84.65 0.46 2.06 16 17 N -0.91 -45.35 13.29 21.45 0.28 -45.06 16 18 Si 0.95 38.70 29.54 68.60 2.03 40.73 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 20 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 22 C 0.13 4.39 2.43 44.99 0.11 4.50 16 23 C -0.12 -3.56 5.11 30.59 0.16 -3.41 16 24 C -0.11 -2.45 5.92 30.59 0.18 -2.27 16 25 C -0.12 -2.57 5.92 30.59 0.18 -2.39 16 26 C -0.11 -2.73 5.92 30.59 0.18 -2.55 16 27 C -0.11 -3.71 4.57 30.59 0.14 -3.57 16 28 C -0.10 -2.98 7.83 22.35 0.18 -2.80 16 29 C -0.05 -1.28 9.60 22.51 0.22 -1.06 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.15 3.44 7.64 -2.91 -0.02 3.42 16 34 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.42 14.82 6.67 -92.71 -0.62 14.21 16 36 H 0.03 1.24 6.69 -2.39 -0.02 1.23 16 37 H 0.05 2.04 6.25 -2.38 -0.01 2.03 16 38 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 39 H 0.12 4.28 5.81 -5.43 -0.03 4.25 16 40 H 0.06 1.87 6.56 -2.39 -0.02 1.86 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 47 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.06 2.30 6.92 -2.39 -0.02 2.29 16 50 H 0.14 4.98 5.99 -9.97 -0.06 4.92 16 51 H 0.16 3.53 7.60 -2.91 -0.02 3.51 16 Total: -1.00 -57.53 417.25 4.40 -53.13 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: 0.27 Total: 39.76 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 6.02 Total: 10.08 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -2.33 Total: -89.39 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.24 Total: -24.18 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Atomic # 16 Polarization: -28.77 SS G_CDS: -1.35 Total: -30.12 kcal Total: -57.53 4.40 -53.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004217839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.207 kcal (2) G-P(sol) polarization free energy of solvation -57.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds