Wall clock time and date at job start Tue Mar 31 2020 06:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00093 * 2 1 4 4 H 1.48504 * 109.46812 * 269.99626 * 3 2 1 5 5 H 1.48495 * 109.47174 * 29.99874 * 3 2 1 6 6 H 1.48500 * 109.47209 * 149.99893 * 3 2 1 7 7 C 1.37879 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99854 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99992 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.40091 * 66.45971 * 9 7 2 11 11 O 1.42098 * 106.40151 * 293.53846 * 9 7 2 12 12 C 1.76202 * 107.21842 * 179.97438 * 9 7 2 13 13 C 1.34238 * 126.49839 * 114.97197 * 12 9 7 14 14 N 1.36837 * 109.92812 * 180.02562 * 13 12 9 15 15 C 1.46499 * 125.06029 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.46943 * 265.02318 * 15 14 13 17 17 O 1.21280 * 120.00515 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00111 * 180.02562 * 16 15 14 19 19 C 1.46931 * 120.62659 * 359.72394 * 18 16 15 20 20 C 1.53622 * 108.54337 * 126.37164 * 19 18 16 21 21 C 1.53033 * 109.24541 * 54.85007 * 20 19 18 22 22 C 1.53035 * 109.54113 * 298.51544 * 21 20 19 23 23 C 1.46923 * 120.63593 * 179.97438 * 18 16 15 24 24 C 1.37691 * 109.87433 * 0.02562 * 14 13 12 25 25 C 1.39123 * 133.51229 * 180.02562 * 24 14 13 26 26 C 1.37743 * 119.78222 * 179.97438 * 25 24 14 27 27 C 1.38832 * 120.66710 * 359.97438 * 26 25 24 28 28 C 1.36625 * 120.52845 * 359.97438 * 27 26 25 29 29 C 1.39637 * 119.75993 * 359.97438 * 28 27 26 30 30 H 0.97004 * 120.00104 * 0.02562 * 1 2 3 31 31 H 1.08000 * 125.03833 * 0.02623 * 13 12 9 32 32 H 1.08994 * 109.47251 * 25.02443 * 15 14 13 33 33 H 1.09004 * 109.46922 * 145.02863 * 15 14 13 34 34 H 1.09002 * 109.58149 * 246.20186 * 19 18 16 35 35 H 1.08993 * 109.58568 * 6.62246 * 19 18 16 36 36 H 1.09009 * 109.62813 * 294.85872 * 20 19 18 37 37 H 1.08996 * 109.43135 * 174.72594 * 20 19 18 38 38 H 1.08995 * 109.46143 * 178.49035 * 21 20 19 39 39 H 1.09001 * 109.44526 * 58.52761 * 21 20 19 40 40 H 1.09001 * 109.49922 * 301.41107 * 22 21 20 41 41 H 1.09004 * 109.50366 * 181.31491 * 22 21 20 42 42 H 1.09004 * 109.58618 * 353.37776 * 23 18 16 43 43 H 1.09002 * 109.58428 * 113.79736 * 23 18 16 44 44 H 1.08001 * 120.10598 * 359.97310 * 25 24 14 45 45 H 1.08002 * 119.66925 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.73830 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.12341 * 179.72861 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2494 11 8 0.4509 -2.7949 1.2500 12 6 2.3202 -4.0132 0.0005 13 6 2.5282 -4.9087 0.9788 14 7 3.5403 -5.7590 0.6252 15 6 4.0391 -6.8624 1.4499 16 6 5.2333 -6.3970 2.2424 17 8 5.6287 -5.2560 2.1299 18 7 5.8623 -7.2489 3.0763 19 6 5.3915 -8.6324 3.2278 20 6 6.5723 -9.5811 2.9717 21 6 7.7306 -9.2066 3.8990 22 6 8.1869 -7.7775 3.5965 23 6 7.0283 -6.8102 3.8551 24 6 4.0207 -5.4225 -0.6205 25 6 5.0209 -5.9446 -1.4345 26 6 5.2717 -5.3729 -2.6623 27 6 4.5356 -4.2794 -3.0979 28 6 3.5481 -3.7513 -2.3152 29 6 3.2763 -4.3158 -1.0673 30 1 -0.4850 0.8401 -0.0004 31 1 1.9782 -4.9516 1.9072 32 1 3.2548 -7.1890 2.1327 33 1 4.3307 -7.6932 0.8073 34 1 5.0127 -8.7808 4.2391 35 1 4.5990 -8.8298 2.5060 36 1 6.8940 -9.4934 1.9339 37 1 6.2632 -10.6070 3.1717 38 1 8.5608 -9.8945 3.7391 39 1 7.4006 -9.2706 4.9359 40 1 8.4936 -7.7067 2.5529 41 1 9.0272 -7.5196 4.2412 42 1 7.3160 -5.8049 3.5474 43 1 6.7805 -6.8126 4.9166 44 1 5.5988 -6.7953 -1.1047 45 1 6.0489 -5.7793 -3.2926 46 1 4.7451 -3.8426 -4.0632 47 1 2.9824 -2.8978 -2.6587 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004272517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:38 Heat of formation + Delta-G solvation = -57.320108 kcal Electronic energy + Delta-G solvation = -32513.806204 eV Core-core repulsion = 28174.766619 eV Total energy + Delta-G solvation = -4339.039585 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.31471 -40.19942 -37.74804 -36.68980 -34.96447 -33.77331 -33.59570 -32.98317 -32.72558 -31.59074 -30.20403 -28.66668 -27.37736 -25.99284 -25.44175 -23.67016 -22.48332 -21.67341 -21.45596 -20.54620 -19.31130 -18.40065 -17.82824 -17.45210 -16.43812 -16.39113 -16.08337 -15.58908 -15.29307 -15.08040 -15.04035 -14.74085 -14.52968 -14.18199 -14.07905 -13.80020 -13.74442 -13.62609 -13.45726 -13.29639 -13.22327 -12.82093 -12.48306 -12.26753 -11.89238 -11.79434 -11.47075 -11.36347 -11.35006 -11.22051 -11.11325 -11.07269 -11.05328 -10.71977 -10.49705 -10.17318 -10.09084 -10.01933 -9.57617 -9.38791 -9.12622 -9.05091 -8.63288 -7.86667 -7.54769 -6.58430 -5.17910 1.40815 1.89969 2.21685 2.26780 2.49249 2.78295 2.97636 3.16990 3.23020 3.32579 3.99880 4.18927 4.20627 4.28611 4.32217 4.42527 4.45987 4.58830 4.69758 4.75963 4.78000 4.81167 4.92925 5.02127 5.07427 5.24413 5.27212 5.29709 5.37292 5.39663 5.44892 5.53763 5.58933 5.63017 5.68363 5.82318 5.86841 5.95212 6.03206 6.09453 6.15361 6.36511 6.69479 6.91239 6.93638 6.95774 7.05405 7.16767 7.41728 7.44322 7.49512 7.83822 8.13398 9.01013 10.35958 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.002751 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.999962 B =10174.189870 C =10789.892695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.997 4.997 8 H 0.104 0.896 9 S 2.632 3.368 10 O -0.985 6.985 11 O -0.995 6.995 12 C -0.702 4.702 13 C 0.166 3.834 14 N -0.470 5.470 15 C 0.092 3.908 16 C 0.493 3.507 17 O -0.507 6.507 18 N -0.614 5.614 19 C 0.103 3.897 20 C -0.136 4.136 21 C -0.120 4.120 22 C -0.135 4.135 23 C 0.111 3.889 24 C 0.097 3.903 25 C -0.129 4.129 26 C -0.106 4.106 27 C -0.145 4.145 28 C -0.064 4.064 29 C -0.034 4.034 30 H 0.290 0.710 31 H 0.184 0.816 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.035 -20.996 5.612 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.084 4.084 3 Si 0.743 3.257 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.130 5.130 8 H 0.123 0.877 9 S 2.812 3.188 10 O -0.982 6.982 11 O -0.993 6.993 12 C -0.791 4.791 13 C 0.038 3.962 14 N -0.154 5.154 15 C -0.035 4.035 16 C 0.278 3.722 17 O -0.380 6.380 18 N -0.351 5.351 19 C -0.020 4.020 20 C -0.174 4.174 21 C -0.158 4.158 22 C -0.173 4.173 23 C -0.012 4.012 24 C -0.007 4.007 25 C -0.150 4.150 26 C -0.125 4.125 27 C -0.164 4.164 28 C -0.082 4.082 29 C -0.038 4.038 30 H 0.100 0.900 31 H 0.201 0.799 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.325 -20.732 5.729 25.843 hybrid contribution 1.430 0.602 0.285 1.577 sum 15.754 -20.130 6.014 26.260 Atomic orbital electron populations 1.69906 1.06700 1.30578 1.40430 1.24740 0.94460 1.00624 0.88570 0.86179 0.80279 0.80010 0.79221 1.19114 1.20033 1.18589 1.30172 1.06103 1.10289 1.66461 0.87743 1.00108 0.72216 0.73424 0.73095 1.93331 1.72305 1.87742 1.44851 1.93311 1.72613 1.88094 1.45246 1.32779 1.23167 1.22029 1.01079 1.21726 0.88307 0.88075 0.98082 1.43646 1.30309 1.27286 1.14121 1.21630 0.96550 0.89810 0.95468 1.21060 0.85005 0.85996 0.80116 1.90829 1.65021 1.18174 1.63963 1.48120 1.31299 1.11843 1.43813 1.21910 0.96870 0.80614 1.02572 1.22001 0.95670 0.99053 1.00700 1.21515 0.98099 0.96518 0.99651 1.21911 0.97784 0.95009 1.02597 1.21601 0.84737 0.99634 0.95179 1.18240 0.98398 0.97968 0.86048 1.19809 0.98277 1.01988 0.94922 1.20707 0.99833 0.96792 0.95180 1.20611 0.97544 0.97878 1.00375 1.20632 0.96594 0.99256 0.91759 1.18430 0.95709 0.95492 0.94193 0.89986 0.79916 0.86020 0.86679 0.90712 0.89762 0.91312 0.90446 0.91548 0.91618 0.91473 0.90581 0.88812 0.91359 0.87268 0.86135 0.85895 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.33 13.19 55.43 0.73 -24.60 16 2 C 0.13 3.83 5.46 -17.82 -0.10 3.73 16 3 Si 0.92 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.99 7.11 56.52 0.40 -5.58 16 7 C -1.00 -28.78 9.58 30.60 0.29 -28.49 16 8 H 0.10 2.86 7.81 -52.48 -0.41 2.45 16 9 S 2.63 73.45 4.82 -107.50 -0.52 72.93 16 10 O -0.99 -29.71 17.90 -57.17 -1.02 -30.73 16 11 O -1.00 -29.40 17.64 -57.17 -1.01 -30.41 16 12 C -0.70 -16.30 6.21 -37.67 -0.23 -16.53 16 13 C 0.17 3.22 10.92 -16.73 -0.18 3.04 16 14 N -0.47 -7.83 2.27 -115.71 -0.26 -8.09 16 15 C 0.09 0.99 4.83 -5.20 -0.03 0.97 16 16 C 0.49 6.24 7.77 -10.99 -0.09 6.15 16 17 O -0.51 -9.19 15.83 5.56 0.09 -9.10 16 18 N -0.61 -5.48 2.97 -172.53 -0.51 -5.99 16 19 C 0.10 0.53 6.37 -3.48 -0.02 0.51 16 20 C -0.14 -0.59 6.10 -26.39 -0.16 -0.75 16 21 C -0.12 -0.56 5.88 -26.70 -0.16 -0.72 16 22 C -0.13 -0.84 6.08 -26.64 -0.16 -1.01 16 23 C 0.11 0.94 6.43 -3.74 -0.02 0.92 16 24 C 0.10 1.79 6.80 -83.99 -0.57 1.22 16 25 C -0.13 -2.00 10.00 -39.43 -0.39 -2.40 16 26 C -0.11 -1.55 10.01 -39.54 -0.40 -1.94 16 27 C -0.15 -2.36 9.97 -39.94 -0.40 -2.76 16 28 C -0.06 -1.29 10.05 -39.64 -0.40 -1.69 16 29 C -0.03 -0.74 6.37 -105.14 -0.67 -1.41 16 30 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.18 3.03 8.06 -52.49 -0.42 2.60 16 32 H 0.12 0.91 7.91 -51.93 -0.41 0.50 16 33 H 0.12 0.90 7.70 -51.93 -0.40 0.50 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.30 5.93 -51.93 -0.31 0.00 16 36 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 37 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 1.04 7.01 -51.93 -0.36 0.67 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 45 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 46 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.14 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 404.41 15.07 6.09 6.09 Total: -1.00 -40.74 404.41 -11.64 -52.38 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.52 Total: 2.30 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: -3.69 Total: -41.15 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.04 Total: -38.68 kcal Atomic # 8 Polarization: -68.30 SS G_CDS: -1.94 Total: -70.25 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 73.45 SS G_CDS: -0.52 Total: 72.93 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -40.74 -11.64 -52.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004272517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.938 kcal (2) G-P(sol) polarization free energy of solvation -40.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds