Wall clock time and date at job start Tue Mar 31 2020 05:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46503 * 120.00329 * 2 1 4 4 C 1.50700 * 109.46807 * 270.00319 * 3 2 1 5 5 H 1.07995 * 120.00454 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99939 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99757 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00310 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46943 * 60.00021 * 8 6 4 10 10 H 1.48493 * 109.47116 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46884 * 300.00256 * 8 6 4 12 12 C 1.34772 * 120.00018 * 179.97438 * 2 1 3 13 13 O 1.21588 * 120.00136 * 180.27674 * 12 2 1 14 14 N 1.34781 * 119.99942 * 359.97438 * 12 2 1 15 15 C 1.46503 * 119.99709 * 179.97438 * 14 12 2 16 16 H 1.08996 * 110.85809 * 37.34150 * 15 14 12 17 17 C 1.54628 * 110.97016 * 273.54707 * 15 14 12 18 18 C 1.51283 * 104.19617 * 266.68105 * 17 15 14 19 19 O 1.21297 * 124.94458 * 163.71036 * 18 17 15 20 20 N 1.34417 * 110.11865 * 343.75017 * 18 17 15 21 21 C 1.40101 * 124.35236 * 179.56857 * 20 18 17 22 22 C 1.38844 * 120.01510 * 173.94836 * 21 20 18 23 23 C 1.38129 * 120.03347 * 179.77553 * 22 21 20 24 24 C 1.38713 * 120.16413 * 0.58647 * 23 22 21 25 25 C 1.38991 * 119.93072 * 359.60265 * 24 23 22 26 26 C 1.38650 * 119.88365 * 0.12197 * 25 24 23 27 27 O 1.36121 * 120.78919 * 180.26608 * 25 24 23 28 28 C 1.43172 * 116.72355 * 342.80206 * 27 25 24 29 29 C 1.53465 * 108.24846 * 46.19032 * 28 27 25 30 30 O 1.36203 * 119.32261 * 179.51645 * 24 23 22 31 31 C 1.46762 * 111.29758 * 359.58953 * 20 18 17 32 32 H 1.09008 * 109.47357 * 270.00151 * 1 2 3 33 33 H 1.09001 * 109.47304 * 29.99772 * 1 2 3 34 34 H 1.08999 * 109.47508 * 150.00378 * 1 2 3 35 35 H 1.09000 * 109.46912 * 29.99809 * 3 2 1 36 36 H 1.09000 * 109.47077 * 149.99907 * 3 2 1 37 37 H 0.97001 * 119.99945 * 180.02562 * 7 6 4 38 38 H 0.97001 * 119.99984 * 0.02562 * 14 12 2 39 39 H 1.08996 * 110.48651 * 25.35945 * 17 15 14 40 40 H 1.08995 * 110.48749 * 147.87275 * 17 15 14 41 41 H 1.07998 * 119.98536 * 0.05304 * 22 21 20 42 42 H 1.08002 * 119.92177 * 180.32741 * 23 22 21 43 43 H 1.08010 * 119.99040 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.70368 * 165.88217 * 28 27 25 45 45 H 1.09005 * 109.70946 * 286.46089 * 28 27 25 46 46 H 1.09003 * 109.71176 * 59.91280 * 29 28 27 47 47 H 1.08997 * 109.71604 * 180.54877 * 29 28 27 48 48 H 1.09005 * 110.24911 * 258.01458 * 31 20 18 49 49 H 1.09007 * 110.24582 * 136.01596 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.1405 3.5936 -4.1347 10 1 4.1803 4.7028 -3.4340 11 1 4.2412 2.3820 -4.1334 12 6 2.1388 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0056 14 7 1.4649 -2.3344 0.0016 15 6 2.1975 -3.6031 0.0016 16 1 3.0933 -3.5340 0.6186 17 6 2.5504 -4.0383 -1.4396 18 6 1.4075 -4.9431 -1.8444 19 8 1.1510 -5.2712 -2.9836 20 7 0.7170 -5.3299 -0.7579 21 6 -0.4072 -6.1653 -0.7918 22 6 -0.9777 -6.6104 0.3932 23 6 -2.0889 -7.4302 0.3604 24 6 -2.6309 -7.8212 -0.8552 25 6 -2.0596 -7.3804 -2.0431 26 6 -0.9477 -6.5528 -2.0096 27 8 -2.5804 -7.7489 -3.2455 28 6 -3.4646 -8.8750 -3.2463 29 6 -4.4609 -8.7045 -2.0915 30 8 -3.7208 -8.6379 -0.8676 31 6 1.2918 -4.7643 0.4683 32 1 -0.3634 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3634 -0.8900 -0.5138 35 1 1.6084 2.0284 0.5138 36 1 3.1499 1.1383 0.5138 37 1 4.0296 4.4442 -0.8505 38 1 0.4949 -2.3344 0.0016 39 1 2.6021 -3.1713 -2.0981 40 1 3.4942 -4.5833 -1.4532 41 1 -0.5552 -6.3118 1.3412 42 1 -2.5344 -7.7711 1.2833 43 1 -0.5021 -6.2096 -2.9317 44 1 -4.0031 -8.9187 -4.1930 45 1 -2.8921 -9.7920 -3.1064 46 1 -5.0284 -7.7840 -2.2284 47 1 -5.1410 -9.5558 -2.0640 48 1 1.8827 -5.5172 0.9901 49 1 0.5007 -4.3883 1.1172 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004374439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:32 Heat of formation + Delta-G solvation = -78.913297 kcal Electronic energy + Delta-G solvation = -34250.416135 eV Core-core repulsion = 29565.405990 eV Total energy + Delta-G solvation = -4685.010144 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.167 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.74039 -41.08464 -39.34258 -37.90878 -37.53354 -36.88415 -34.89154 -34.16326 -32.65927 -31.65595 -31.25454 -29.94140 -28.19676 -27.91838 -27.50083 -25.77136 -24.99987 -23.58484 -23.13153 -22.00150 -21.05791 -20.18948 -19.52637 -18.84672 -18.03914 -17.69342 -17.40024 -16.97490 -16.58647 -16.50018 -15.81773 -15.68556 -15.36927 -15.22821 -14.80820 -14.69616 -14.55382 -14.38968 -14.15476 -13.89857 -13.81519 -13.74309 -13.57233 -13.40935 -12.98416 -12.86581 -12.31872 -12.30903 -12.18531 -11.96381 -11.94493 -11.76904 -11.65727 -11.46538 -11.16717 -10.95807 -10.90184 -10.54320 -10.14460 -10.05017 -9.86868 -9.64748 -9.33213 -8.87510 -8.81151 -8.41171 -7.90176 -7.63206 -6.02389 -4.06842 0.89391 0.99102 2.28814 2.40236 2.71919 2.96850 3.13596 3.34193 3.38267 3.42508 3.44325 3.81085 3.83490 4.01212 4.23241 4.33262 4.39608 4.40616 4.49518 4.54908 4.59162 4.73013 4.79151 4.90063 4.93986 5.02106 5.08455 5.13057 5.30708 5.31582 5.45146 5.51791 5.55486 5.64349 5.80355 5.82003 5.86332 5.93597 6.02260 6.14846 6.52360 6.56452 6.70448 6.75979 6.77196 7.10804 7.35724 7.52436 7.68541 7.82241 7.95966 8.25359 8.63526 8.93983 9.28765 9.58743 11.05344 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.001918 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.239295 B =14591.575240 C =15019.644687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.616 5.616 3 C 0.261 3.739 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.702 3.298 13 O -0.581 6.581 14 N -0.752 5.752 15 C 0.161 3.839 16 H 0.123 0.877 17 C -0.167 4.167 18 C 0.520 3.480 19 O -0.507 6.507 20 N -0.560 5.560 21 C 0.178 3.822 22 C -0.154 4.154 23 C -0.083 4.083 24 C 0.020 3.980 25 C 0.081 3.919 26 C -0.154 4.154 27 O -0.303 6.303 28 C 0.020 3.980 29 C 0.021 3.979 30 O -0.309 6.309 31 C 0.090 3.910 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.393 0.607 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.167 0.833 44 H 0.122 0.878 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.121 0.879 48 H 0.099 0.901 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.372 -26.525 3.679 30.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.351 5.351 3 C 0.141 3.859 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.403 3.597 13 O -0.458 6.458 14 N -0.412 5.412 15 C 0.053 3.947 16 H 0.140 0.860 17 C -0.209 4.209 18 C 0.310 3.690 19 O -0.381 6.381 20 N -0.285 5.285 21 C 0.084 3.916 22 C -0.175 4.175 23 C -0.103 4.103 24 C -0.026 4.026 25 C 0.036 3.964 26 C -0.175 4.175 27 O -0.218 6.218 28 C -0.056 4.056 29 C -0.055 4.055 30 O -0.224 6.224 31 C -0.032 4.032 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.228 0.772 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.184 0.816 44 H 0.140 0.860 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.139 0.861 48 H 0.117 0.883 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.514 -26.463 3.078 30.338 hybrid contribution -0.629 0.247 -1.147 1.331 sum -15.143 -26.215 1.931 30.336 Atomic orbital electron populations 1.21545 0.81856 1.02256 1.00175 1.47464 1.05585 1.06491 1.75564 1.19214 0.92319 0.76981 0.97364 1.21421 1.36475 1.06181 0.92421 0.92601 1.24925 0.95391 0.96407 0.97380 1.69921 1.38436 1.14359 1.30729 0.86569 0.78353 0.77801 0.84752 1.20316 1.21202 1.20173 1.15869 0.85488 0.80079 0.78234 1.90901 1.11404 1.85914 1.57613 1.45366 1.09259 1.04124 1.82422 1.21482 0.95675 0.82018 0.95526 0.85967 1.22923 0.97570 1.00905 0.99484 1.21263 0.83675 0.80094 0.83920 1.90636 1.69956 1.57198 1.20348 1.45857 1.26747 1.46350 1.09518 1.17310 0.87782 0.93097 0.93452 1.20533 0.98255 1.01843 0.96830 1.20153 0.96450 0.97955 0.95702 1.18843 0.91081 0.99155 0.93476 1.18612 0.94700 0.99290 0.83843 1.20768 0.95343 1.01777 0.99624 1.86353 1.60895 1.47459 1.27057 1.23651 0.92090 0.88668 1.01144 1.23607 0.93745 1.04538 0.83583 1.86308 1.38382 1.62147 1.35522 1.22647 0.98274 0.95938 0.86376 0.93816 0.90515 0.93308 0.94946 0.93684 0.92690 0.77178 0.86456 0.86308 0.84528 0.84316 0.81556 0.86025 0.90438 0.90491 0.86114 0.88323 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 10.20 59.84 0.61 1.93 16 2 N -0.62 -12.69 2.86 -188.74 -0.54 -13.23 16 3 C 0.26 6.71 5.16 -5.19 -0.03 6.69 16 4 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.70 13.87 8.28 -86.92 -0.72 13.15 16 13 O -0.58 -13.94 15.66 5.29 0.08 -13.86 16 14 N -0.75 -10.32 5.03 -57.08 -0.29 -10.61 16 15 C 0.16 1.74 3.43 -66.29 -0.23 1.51 16 16 H 0.12 1.33 7.72 -51.93 -0.40 0.93 16 17 C -0.17 -2.01 6.58 -26.74 -0.18 -2.19 16 18 C 0.52 6.84 7.92 -10.86 -0.09 6.76 16 19 O -0.51 -8.39 14.82 5.54 0.08 -8.30 16 20 N -0.56 -5.88 3.14 -112.25 -0.35 -6.23 16 21 C 0.18 1.96 6.60 -83.66 -0.55 1.41 16 22 C -0.15 -1.32 9.40 -39.40 -0.37 -1.69 16 23 C -0.08 -0.74 9.95 -39.45 -0.39 -1.14 16 24 C 0.02 0.21 6.49 -39.13 -0.25 -0.04 16 25 C 0.08 0.98 6.49 -39.15 -0.25 0.72 16 26 C -0.15 -2.01 9.20 -39.24 -0.36 -2.37 16 27 O -0.30 -3.45 10.42 -32.90 -0.34 -3.79 16 28 C 0.02 0.13 7.26 37.40 0.27 0.41 16 29 C 0.02 0.13 7.26 37.40 0.27 0.40 16 30 O -0.31 -2.92 10.42 -33.17 -0.35 -3.26 16 31 C 0.09 0.68 5.87 -3.12 -0.02 0.66 16 32 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 33 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 34 H 0.05 0.62 6.36 -51.93 -0.33 0.29 16 35 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.39 4.58 6.30 -40.82 -0.26 4.33 16 39 H 0.12 1.75 8.09 -51.93 -0.42 1.33 16 40 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.14 0.80 7.02 -52.49 -0.37 0.43 16 42 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.17 2.55 5.25 -52.48 -0.28 2.27 16 44 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.57 7.60 -51.92 -0.39 0.18 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -37.55 404.52 -9.19 -46.74 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.60 Total: 2.53 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: -2.71 Total: 12.67 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.44 Total: -55.81 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.52 Total: -29.22 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.55 -9.19 -46.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004374439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.172 kcal (2) G-P(sol) polarization free energy of solvation -37.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds