Wall clock time and date at job start Tue Mar 31 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46503 * 120.00329 * 2 1 4 4 C 1.50700 * 109.46807 * 270.00319 * 3 2 1 5 5 H 1.07995 * 120.00454 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99939 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99757 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00310 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46943 * 60.00021 * 8 6 4 10 10 H 1.48493 * 109.47116 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46884 * 300.00256 * 8 6 4 12 12 C 1.34772 * 120.00018 * 179.97438 * 2 1 3 13 13 O 1.21588 * 120.00136 * 180.27674 * 12 2 1 14 14 N 1.34781 * 119.99942 * 359.97438 * 12 2 1 15 15 C 1.46503 * 119.99709 * 179.97438 * 14 12 2 16 16 H 1.08996 * 110.85809 * 37.34150 * 15 14 12 17 17 C 1.54628 * 110.97016 * 273.54707 * 15 14 12 18 18 C 1.51283 * 104.19617 * 266.68105 * 17 15 14 19 19 O 1.21297 * 124.94458 * 163.71036 * 18 17 15 20 20 N 1.34417 * 110.11865 * 343.75017 * 18 17 15 21 21 C 1.40101 * 124.35236 * 179.56857 * 20 18 17 22 22 C 1.38844 * 120.01510 * 173.94836 * 21 20 18 23 23 C 1.38129 * 120.03347 * 179.77553 * 22 21 20 24 24 C 1.38713 * 120.16413 * 0.58647 * 23 22 21 25 25 C 1.38991 * 119.93072 * 359.60265 * 24 23 22 26 26 C 1.38650 * 119.88365 * 0.12197 * 25 24 23 27 27 O 1.36121 * 120.78919 * 180.26608 * 25 24 23 28 28 C 1.43172 * 116.72355 * 342.80206 * 27 25 24 29 29 C 1.53465 * 108.24846 * 46.19032 * 28 27 25 30 30 O 1.36203 * 119.32261 * 179.51645 * 24 23 22 31 31 C 1.46762 * 111.29758 * 359.58953 * 20 18 17 32 32 H 1.09008 * 109.47357 * 270.00151 * 1 2 3 33 33 H 1.09001 * 109.47304 * 29.99772 * 1 2 3 34 34 H 1.08999 * 109.47508 * 150.00378 * 1 2 3 35 35 H 1.09000 * 109.46912 * 29.99809 * 3 2 1 36 36 H 1.09000 * 109.47077 * 149.99907 * 3 2 1 37 37 H 0.97001 * 119.99945 * 180.02562 * 7 6 4 38 38 H 0.97001 * 119.99984 * 0.02562 * 14 12 2 39 39 H 1.08996 * 110.48651 * 25.35945 * 17 15 14 40 40 H 1.08995 * 110.48749 * 147.87275 * 17 15 14 41 41 H 1.07998 * 119.98536 * 0.05304 * 22 21 20 42 42 H 1.08002 * 119.92177 * 180.32741 * 23 22 21 43 43 H 1.08010 * 119.99040 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.70368 * 165.88217 * 28 27 25 45 45 H 1.09005 * 109.70946 * 286.46089 * 28 27 25 46 46 H 1.09003 * 109.71176 * 59.91280 * 29 28 27 47 47 H 1.08997 * 109.71604 * 180.54877 * 29 28 27 48 48 H 1.09005 * 110.24911 * 258.01458 * 31 20 18 49 49 H 1.09007 * 110.24582 * 136.01596 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.1405 3.5936 -4.1347 10 1 4.1803 4.7028 -3.4340 11 1 4.2412 2.3820 -4.1334 12 6 2.1388 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0056 14 7 1.4649 -2.3344 0.0016 15 6 2.1975 -3.6031 0.0016 16 1 3.0933 -3.5340 0.6186 17 6 2.5504 -4.0383 -1.4396 18 6 1.4075 -4.9431 -1.8444 19 8 1.1510 -5.2712 -2.9836 20 7 0.7170 -5.3299 -0.7579 21 6 -0.4072 -6.1653 -0.7918 22 6 -0.9777 -6.6104 0.3932 23 6 -2.0889 -7.4302 0.3604 24 6 -2.6309 -7.8212 -0.8552 25 6 -2.0596 -7.3804 -2.0431 26 6 -0.9477 -6.5528 -2.0096 27 8 -2.5804 -7.7489 -3.2455 28 6 -3.4646 -8.8750 -3.2463 29 6 -4.4609 -8.7045 -2.0915 30 8 -3.7208 -8.6379 -0.8676 31 6 1.2918 -4.7643 0.4683 32 1 -0.3634 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3634 -0.8900 -0.5138 35 1 1.6084 2.0284 0.5138 36 1 3.1499 1.1383 0.5138 37 1 4.0296 4.4442 -0.8505 38 1 0.4949 -2.3344 0.0016 39 1 2.6021 -3.1713 -2.0981 40 1 3.4942 -4.5833 -1.4532 41 1 -0.5552 -6.3118 1.3412 42 1 -2.5344 -7.7711 1.2833 43 1 -0.5021 -6.2096 -2.9317 44 1 -4.0031 -8.9187 -4.1930 45 1 -2.8921 -9.7920 -3.1064 46 1 -5.0284 -7.7840 -2.2284 47 1 -5.1410 -9.5558 -2.0640 48 1 1.8827 -5.5172 0.9901 49 1 0.5007 -4.3883 1.1172 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004374439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:30 Heat of formation + Delta-G solvation = -105.852928 kcal Electronic energy + Delta-G solvation = -34251.584325 eV Core-core repulsion = 29565.405990 eV Total energy + Delta-G solvation = -4686.178334 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.167 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.54497 -41.92236 -40.78468 -38.72567 -38.23230 -37.96507 -36.53646 -35.36554 -34.61344 -32.70430 -31.95611 -30.75409 -29.66730 -28.76467 -28.64457 -27.27263 -25.73800 -24.95573 -24.31488 -22.95421 -21.96835 -21.16721 -20.74206 -19.59784 -18.95606 -18.77136 -18.61549 -18.38778 -17.98232 -17.38876 -16.99691 -16.55232 -16.50018 -16.33384 -16.09063 -15.90746 -15.38590 -15.33749 -15.17044 -14.96435 -14.81021 -14.73545 -14.56127 -14.43869 -14.17260 -13.91119 -13.78054 -13.48050 -13.39596 -13.20855 -12.98312 -12.91100 -12.85626 -12.61063 -12.51105 -12.39645 -12.16138 -12.02103 -11.72046 -11.64436 -11.05814 -10.88076 -10.75695 -10.61418 -10.16113 -9.60337 -9.30964 -8.66918 -8.19349 -6.33361 0.09434 0.22877 1.36888 1.37414 1.40500 1.47660 1.57807 1.82439 2.07144 2.30102 2.34617 2.41765 2.67821 3.08756 3.12585 3.17509 3.28934 3.35590 3.65155 3.69938 3.92670 4.04359 4.06923 4.15164 4.17558 4.32568 4.34823 4.43522 4.49522 4.53956 4.58217 4.67247 4.71451 4.72876 4.82156 4.85771 4.90222 5.02993 5.10193 5.12381 5.25801 5.29984 5.55118 5.58964 5.72503 5.81707 5.87921 5.94560 6.10060 6.15199 6.39349 6.75490 6.86606 7.17926 7.33509 7.76760 8.86416 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.001918 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.239295 B =14591.575240 C =15019.644687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.627 5.627 3 C 0.277 3.723 4 C -0.541 4.541 5 H 0.047 0.953 6 C 0.010 3.990 7 N -0.925 5.925 8 Si 0.962 3.038 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.280 1.280 12 C 0.699 3.301 13 O -0.631 6.631 14 N -0.730 5.730 15 C 0.157 3.843 16 H 0.128 0.872 17 C -0.164 4.164 18 C 0.515 3.485 19 O -0.552 6.552 20 N -0.552 5.552 21 C 0.165 3.835 22 C -0.135 4.135 23 C -0.081 4.081 24 C 0.014 3.986 25 C 0.064 3.936 26 C -0.184 4.184 27 O -0.333 6.333 28 C 0.012 3.988 29 C 0.018 3.982 30 O -0.318 6.318 31 C 0.098 3.902 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.026 0.974 36 H 0.004 0.996 37 H 0.267 0.733 38 H 0.406 0.594 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.176 0.824 42 H 0.168 0.832 43 H 0.134 0.866 44 H 0.149 0.851 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.157 0.843 48 H 0.140 0.860 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.450 -28.463 5.402 33.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.362 5.362 3 C 0.155 3.845 4 C -0.580 4.580 5 H 0.065 0.935 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.786 3.214 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.206 1.206 12 C 0.400 3.600 13 O -0.512 6.512 14 N -0.389 5.389 15 C 0.051 3.949 16 H 0.145 0.855 17 C -0.206 4.206 18 C 0.306 3.694 19 O -0.431 6.431 20 N -0.275 5.275 21 C 0.071 3.929 22 C -0.155 4.155 23 C -0.099 4.099 24 C -0.031 4.031 25 C 0.018 3.982 26 C -0.205 4.205 27 O -0.248 6.248 28 C -0.063 4.063 29 C -0.057 4.057 30 O -0.233 6.233 31 C -0.023 4.023 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.022 0.978 37 H 0.076 0.924 38 H 0.244 0.756 39 H 0.101 0.899 40 H 0.156 0.844 41 H 0.194 0.806 42 H 0.185 0.815 43 H 0.151 0.849 44 H 0.166 0.834 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.174 0.826 48 H 0.157 0.843 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.679 -28.455 4.839 33.336 hybrid contribution -0.075 0.738 -1.685 1.841 sum -16.754 -27.717 3.154 32.541 Atomic orbital electron populations 1.21788 0.78510 1.03182 1.02479 1.47329 1.07623 1.05312 1.75968 1.18642 0.91040 0.79227 0.95572 1.21685 1.36674 1.06338 0.93311 0.93487 1.25770 0.95082 0.96519 1.01551 1.70025 1.38943 1.14763 1.32740 0.85564 0.78668 0.77409 0.79726 1.18916 1.20138 1.20595 1.16046 0.84993 0.81151 0.77803 1.90860 1.13791 1.86827 1.59721 1.45142 1.09849 1.03269 1.80654 1.21730 0.96731 0.81652 0.94798 0.85460 1.22867 0.98418 0.99686 0.99598 1.21416 0.84020 0.80090 0.83924 1.90626 1.71157 1.58941 1.22346 1.45850 1.26206 1.45752 1.09688 1.17455 0.88051 0.93699 0.93718 1.20896 0.97289 1.00239 0.97101 1.20590 0.96135 0.97148 0.96069 1.19089 0.91452 0.99074 0.93519 1.18733 0.94931 0.99784 0.84725 1.20679 0.96704 1.03560 0.99519 1.86302 1.61894 1.49101 1.27483 1.23996 0.91880 0.87401 1.02995 1.23894 0.93536 1.06120 0.82148 1.86289 1.38072 1.61808 1.37100 1.22916 0.98917 0.95191 0.85234 0.90685 0.91600 0.90433 0.95560 0.97802 0.92406 0.75589 0.89944 0.84365 0.80638 0.81490 0.84885 0.83367 0.90155 0.90480 0.82571 0.84254 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.41 10.20 127.77 1.30 3.72 16 2 N -0.63 -26.00 2.86 -869.32 -2.48 -28.48 16 3 C 0.28 14.76 5.16 85.63 0.44 15.20 16 4 C -0.54 -31.37 9.39 25.60 0.24 -31.13 16 5 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 6 C 0.01 0.58 5.46 84.65 0.46 1.04 16 7 N -0.92 -55.73 13.29 21.45 0.28 -55.45 16 8 Si 0.96 45.65 29.54 68.60 2.03 47.68 16 9 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 12 C 0.70 27.70 8.28 179.05 1.48 29.19 16 13 O -0.63 -31.18 15.66 -3.99 -0.06 -31.24 16 14 N -0.73 -18.92 5.03 -452.75 -2.28 -21.19 16 15 C 0.16 3.11 3.43 46.05 0.16 3.26 16 16 H 0.13 2.52 7.72 -2.39 -0.02 2.50 16 17 C -0.16 -3.96 6.58 30.59 0.20 -3.76 16 18 C 0.51 13.70 7.92 87.90 0.70 14.40 16 19 O -0.55 -19.55 14.82 -3.08 -0.05 -19.60 16 20 N -0.55 -10.53 3.14 -627.63 -1.97 -12.50 16 21 C 0.16 3.36 6.60 38.09 0.25 3.62 16 22 C -0.14 -1.78 9.40 22.39 0.21 -1.57 16 23 C -0.08 -1.15 9.95 22.36 0.22 -0.93 16 24 C 0.01 0.28 6.49 22.56 0.15 0.42 16 25 C 0.06 1.55 6.49 22.55 0.15 1.70 16 26 C -0.18 -4.94 9.20 22.49 0.21 -4.73 16 27 O -0.33 -7.83 10.42 -82.71 -0.86 -8.69 16 28 C 0.01 0.15 7.26 72.14 0.52 0.67 16 29 C 0.02 0.18 7.26 72.14 0.52 0.71 16 30 O -0.32 -5.34 10.42 -83.64 -0.87 -6.21 16 31 C 0.10 1.07 5.87 86.83 0.51 1.58 16 32 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 34 H 0.08 1.78 6.36 -2.39 -0.02 1.77 16 35 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 36 H 0.00 0.23 7.42 -2.39 -0.02 0.22 16 37 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.41 8.36 6.30 -92.71 -0.58 7.78 16 39 H 0.08 2.61 8.09 -2.39 -0.02 2.59 16 40 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.18 0.90 7.02 -2.91 -0.02 0.88 16 42 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.13 4.48 5.25 -2.91 -0.02 4.47 16 44 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.16 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.14 0.58 8.14 -2.38 -0.02 0.56 16 49 H 0.13 0.75 7.60 -2.38 -0.02 0.73 16 Total: -1.00 -89.14 404.52 1.89 -87.25 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.42 Total: 15.05 kcal Atomic # 6 Polarization: 25.66 SS G_CDS: 7.73 Total: 33.38 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -6.45 Total: -117.62 kcal Atomic # 8 Polarization: -63.90 SS G_CDS: -1.84 Total: -65.74 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -89.14 1.89 -87.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004374439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.604 kcal (2) G-P(sol) polarization free energy of solvation -89.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds