Wall clock time and date at job start Tue Mar 31 2020 06:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47459 * 2 1 4 4 C 1.34940 * 117.00190 * 184.68200 * 3 2 1 5 5 O 1.21688 * 119.99866 * 5.05775 * 4 3 2 6 6 C 1.41450 * 120.00221 * 185.05459 * 4 3 2 7 7 C 1.35048 * 121.12935 * 79.47931 * 6 4 3 8 8 C 1.50699 * 119.46598 * 0.05048 * 7 6 4 9 9 N 1.36562 * 121.06920 * 180.02562 * 7 6 4 10 10 C 1.33893 * 123.68094 * 0.02562 * 9 7 6 11 11 O 1.21561 * 118.92484 * 180.02562 * 10 9 7 12 12 N 1.34706 * 122.13696 * 0.02818 * 10 9 7 13 13 C 1.47259 * 118.46320 * 359.95046 * 12 10 9 14 14 H 1.09006 * 107.95903 * 238.18045 * 13 12 10 15 15 C 1.50703 * 107.95462 * 121.90809 * 13 12 10 16 16 C 1.38195 * 120.00811 * 326.17783 * 15 13 12 17 17 C 1.38273 * 120.17257 * 180.23503 * 16 15 13 18 18 C 1.38280 * 120.18295 * 359.79179 * 17 16 15 19 19 C 1.38521 * 120.01085 * 359.97438 * 18 17 16 20 20 O 1.35957 * 120.08436 * 179.97438 * 19 18 17 21 21 C 1.42898 * 117.00065 * 0.02562 * 20 19 18 22 22 C 1.38719 * 120.00695 * 145.94740 * 15 13 12 23 23 O 1.35803 * 120.09009 * 0.02797 * 22 15 13 24 24 C 1.34815 * 116.99311 * 272.67341 * 23 22 15 25 25 H 1.07995 * 120.00151 * 355.09174 * 24 23 22 26 26 C 1.38643 * 119.99854 * 175.08757 * 24 23 22 27 27 N 1.31571 * 119.99877 * 5.16905 * 26 24 23 28 28 Si 1.86795 * 120.00088 * 185.16685 * 26 24 23 29 29 H 1.48491 * 109.47258 * 59.99949 * 28 26 24 30 30 H 1.48497 * 109.46999 * 180.02562 * 28 26 24 31 31 H 1.48503 * 109.46910 * 299.99697 * 28 26 24 32 32 H 1.09001 * 109.47301 * 64.95678 * 1 2 3 33 33 H 1.09003 * 109.47380 * 184.95537 * 1 2 3 34 34 H 1.08998 * 109.47019 * 304.95687 * 1 2 3 35 35 H 1.09005 * 109.47196 * 239.99380 * 2 1 3 36 36 H 1.09006 * 109.46724 * 120.00118 * 2 1 3 37 37 H 1.08994 * 109.47443 * 93.87603 * 8 7 6 38 38 H 1.08996 * 109.47304 * 213.88175 * 8 7 6 39 39 H 1.09003 * 109.47056 * 333.87652 * 8 7 6 40 40 H 0.97002 * 118.15724 * 179.97438 * 9 7 6 41 41 H 0.96998 * 120.74820 * 180.02562 * 12 10 9 42 42 H 1.08004 * 119.91684 * 0.02562 * 16 15 13 43 43 H 1.08000 * 119.91099 * 179.76424 * 17 16 15 44 44 H 1.07999 * 119.99405 * 179.97438 * 18 17 16 45 45 H 1.08996 * 109.46919 * 180.02562 * 21 20 19 46 46 H 1.09007 * 109.46580 * 300.00212 * 21 20 19 47 47 H 1.09001 * 109.47156 * 59.99432 * 21 20 19 48 48 H 0.96999 * 119.99863 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3404 1.5254 -0.0981 5 8 4.0707 0.5680 -0.2739 6 6 3.8898 2.8248 0.0032 7 6 4.0675 3.4160 1.2044 8 6 3.6750 2.6788 2.4587 9 7 4.5976 4.6709 1.3007 10 6 4.9748 5.4008 0.2436 11 8 5.4374 6.5095 0.4295 12 7 4.8582 4.9465 -1.0192 13 6 4.2974 3.6017 -1.2323 14 1 5.0376 3.0104 -1.7715 15 6 3.0847 3.7387 -2.1165 16 6 2.2829 4.8602 -2.0210 17 6 1.1668 4.9873 -2.8271 18 6 0.8492 3.9949 -3.7363 19 6 1.6503 2.8698 -3.8418 20 8 1.3392 1.8929 -4.7347 21 6 0.1713 2.0922 -5.5336 22 6 2.7758 2.7414 -3.0298 23 8 3.5646 1.6403 -3.1284 24 6 4.6212 1.7171 -3.9621 25 1 4.7637 2.5957 -4.5737 26 6 5.5250 0.6683 -4.0342 27 7 5.2981 -0.4427 -3.3668 28 14 7.0648 0.8324 -5.0788 29 1 7.8778 1.9732 -4.5864 30 1 7.8601 -0.4184 -4.9882 31 1 6.6803 1.0724 -6.4930 32 1 -0.3634 0.4350 -0.9311 33 1 -0.3634 -1.0238 0.0888 34 1 -0.3633 0.5888 0.8422 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 4.5425 2.1534 2.8579 38 1 3.3087 3.3902 3.1988 39 1 2.8896 1.9594 2.2266 40 1 4.7062 5.0552 2.1847 41 1 5.1383 5.4924 -1.7705 42 1 2.5268 5.6380 -1.3124 43 1 0.5409 5.8637 -2.7463 44 1 -0.0236 4.0971 -4.3641 45 1 0.0382 1.2410 -6.2012 46 1 -0.7004 2.1854 -4.8858 47 1 0.2850 3.0023 -6.1227 48 1 5.9306 -1.1764 -3.4170 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004454608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:10 Heat of formation + Delta-G solvation = -113.076749 kcal Electronic energy + Delta-G solvation = -37622.612684 eV Core-core repulsion = 32838.402440 eV Total energy + Delta-G solvation = -4784.210245 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.32047 -39.79153 -39.64000 -37.58538 -36.94030 -36.11206 -35.86545 -34.73099 -32.33806 -31.85003 -31.05137 -30.19545 -29.11231 -28.54002 -26.82473 -25.22288 -24.45154 -23.75654 -22.65172 -21.63605 -21.43452 -20.79043 -19.00066 -18.17062 -17.93405 -17.40013 -16.78510 -16.42030 -16.18116 -16.04119 -15.95429 -15.57732 -15.34730 -15.17456 -15.05653 -14.52302 -14.05023 -13.85147 -13.70884 -13.66193 -13.50966 -13.08961 -12.99061 -12.90559 -12.68737 -12.38982 -12.19037 -11.83673 -11.75965 -11.67212 -11.38510 -11.31080 -11.29947 -11.10626 -10.99808 -10.79273 -10.58701 -10.35469 -10.34977 -10.07022 -9.92771 -9.84094 -9.56433 -9.24808 -8.11175 -8.08254 -7.86776 -7.38050 -5.94442 -3.64780 1.48311 1.79178 1.98226 2.65568 2.74351 3.16527 3.31298 3.34096 3.36185 3.55381 3.71498 3.89741 4.12739 4.36033 4.52049 4.96676 5.11854 5.20665 5.22147 5.29186 5.31604 5.34731 5.36669 5.40414 5.43449 5.45239 5.58797 5.68672 5.73959 5.74731 5.76629 5.84753 5.87699 5.89710 6.00802 6.19279 6.22400 6.35196 6.37259 6.64927 6.78809 6.80505 6.84580 6.99040 7.07626 7.12208 7.30755 7.47888 7.58692 8.00171 8.38246 8.41336 8.48200 9.46102 10.15174 11.21780 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.006635 B = 0.005116 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4218.817328 B = 5472.029120 C = 6054.932188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.536 3.464 5 O -0.446 6.446 6 C -0.205 4.205 7 C 0.165 3.835 8 C -0.127 4.127 9 N -0.651 5.651 10 C 0.708 3.292 11 O -0.585 6.585 12 N -0.706 5.706 13 C 0.238 3.762 14 H 0.120 0.880 15 C -0.111 4.111 16 C -0.126 4.126 17 C -0.113 4.113 18 C -0.199 4.199 19 C 0.096 3.904 20 O -0.289 6.289 21 C 0.027 3.973 22 C 0.131 3.869 23 O -0.217 6.217 24 C -0.374 4.374 25 H 0.063 0.937 26 C 0.040 3.960 27 N -0.857 5.857 28 Si 0.919 3.081 29 H -0.277 1.277 30 H -0.283 1.283 31 H -0.278 1.278 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.422 0.578 41 H 0.431 0.569 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.130 6.085 8.126 14.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 O -0.271 6.271 4 C 0.375 3.625 5 O -0.328 6.328 6 C -0.214 4.214 7 C 0.064 3.936 8 C -0.184 4.184 9 N -0.295 5.295 10 C 0.408 3.592 11 O -0.463 6.463 12 N -0.365 5.365 13 C 0.133 3.867 14 H 0.138 0.862 15 C -0.113 4.113 16 C -0.145 4.145 17 C -0.131 4.131 18 C -0.218 4.218 19 C 0.050 3.950 20 O -0.202 6.202 21 C -0.069 4.069 22 C 0.083 3.917 23 O -0.130 6.130 24 C -0.451 4.451 25 H 0.081 0.919 26 C -0.162 4.162 27 N -0.496 5.496 28 Si 0.745 3.255 29 H -0.202 1.202 30 H -0.208 1.208 31 H -0.204 1.204 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.260 0.740 41 H 0.273 0.727 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.112 0.888 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.515 5.698 8.162 13.770 hybrid contribution 0.550 0.554 -0.917 1.205 sum -8.965 6.252 7.244 13.113 Atomic orbital electron populations 1.21754 0.93449 1.02199 1.02980 1.22544 0.94667 0.81513 1.02667 1.86232 1.24794 1.31480 1.84551 1.18398 0.80820 0.88638 0.74597 1.91058 1.60222 1.41920 1.39578 1.18886 1.13327 0.96149 0.93042 1.19616 0.93536 0.84816 0.95591 1.21089 1.03303 1.00547 0.93469 1.41895 1.62667 1.14741 1.10186 1.15656 0.78451 0.83571 0.81481 1.91002 1.51356 1.19388 1.84533 1.45311 1.66271 1.18647 1.06239 1.18370 0.94660 0.82208 0.91454 0.86225 1.20306 0.97591 0.94609 0.98833 1.20567 0.95627 0.97656 1.00653 1.20615 0.97440 0.98364 0.96717 1.21046 1.01535 0.95608 1.03617 1.19741 0.96044 0.88407 0.90780 1.86346 1.43552 1.41516 1.48767 1.22972 0.87114 1.02357 0.94413 1.18221 0.91256 0.89466 0.92708 1.83985 1.38526 1.27499 1.62953 1.20649 1.01190 1.04083 1.19141 0.91880 1.24912 0.97997 0.95100 0.98172 1.70051 1.35309 1.03502 1.40761 0.86154 0.81947 0.77557 0.79811 1.20245 1.20799 1.20350 0.91732 0.90849 0.92104 0.90368 0.92435 0.89317 0.89969 0.89277 0.74007 0.72703 0.86933 0.86624 0.86165 0.88799 0.93464 0.93435 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 37.16 0.38 -1.45 16 2 C 0.06 0.99 6.19 37.16 0.23 1.22 16 3 O -0.35 -6.49 9.61 -41.15 -0.40 -6.88 16 4 C 0.54 10.89 4.04 31.95 0.13 11.02 16 5 O -0.45 -10.85 16.77 -19.41 -0.33 -11.17 16 6 C -0.21 -3.74 5.12 -104.13 -0.53 -4.28 16 7 C 0.17 2.33 6.84 -81.62 -0.56 1.77 16 8 C -0.13 -1.29 9.70 36.01 0.35 -0.94 16 9 N -0.65 -8.52 5.14 -12.88 -0.07 -8.59 16 10 C 0.71 11.30 8.63 -87.77 -0.76 10.54 16 11 O -0.58 -10.57 17.94 5.31 0.10 -10.47 16 12 N -0.71 -11.57 4.26 -60.31 -0.26 -11.83 16 13 C 0.24 4.57 3.17 -69.41 -0.22 4.35 16 14 H 0.12 2.78 6.52 -51.93 -0.34 2.44 16 15 C -0.11 -2.19 4.66 -104.46 -0.49 -2.68 16 16 C -0.13 -2.13 9.27 -39.58 -0.37 -2.50 16 17 C -0.11 -1.76 10.04 -39.55 -0.40 -2.16 16 18 C -0.20 -3.32 9.04 -39.46 -0.36 -3.68 16 19 C 0.10 2.00 6.70 -39.06 -0.26 1.74 16 20 O -0.29 -6.07 10.28 -34.01 -0.35 -6.42 16 21 C 0.03 0.39 9.81 101.05 0.99 1.38 16 22 C 0.13 2.99 5.14 -38.98 -0.20 2.79 16 23 O -0.22 -5.92 7.99 -14.48 -0.12 -6.04 16 24 C -0.37 -10.53 8.73 30.88 0.27 -10.26 16 25 H 0.06 1.73 7.76 -52.49 -0.41 1.32 16 26 C 0.04 1.14 5.49 -17.51 -0.10 1.04 16 27 N -0.86 -25.96 13.68 55.48 0.76 -25.20 16 28 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 31 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.55 7.96 -51.93 -0.41 1.13 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.99 6.49 -51.93 -0.34 0.66 16 40 H 0.42 4.18 8.65 -40.82 -0.35 3.83 16 41 H 0.43 6.53 8.93 -40.82 -0.36 6.17 16 42 H 0.11 1.75 7.45 -52.48 -0.39 1.36 16 43 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.12 1.64 6.30 -52.49 -0.33 1.31 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 47 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 408.14 15.07 6.15 6.15 Total: -1.00 -36.92 408.14 -7.66 -44.58 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.25 Total: 11.12 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -1.88 Total: 7.92 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.44 Total: -45.61 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.09 Total: -40.98 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.92 -7.66 -44.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004454608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.496 kcal (2) G-P(sol) polarization free energy of solvation -36.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds