Wall clock time and date at job start Tue Mar 31 2020 06:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47459 * 2 1 4 4 C 1.34940 * 117.00190 * 184.68200 * 3 2 1 5 5 O 1.21688 * 119.99866 * 5.05775 * 4 3 2 6 6 C 1.41450 * 120.00221 * 185.05459 * 4 3 2 7 7 C 1.35048 * 121.12935 * 79.47931 * 6 4 3 8 8 C 1.50699 * 119.46598 * 0.05048 * 7 6 4 9 9 N 1.36562 * 121.06920 * 180.02562 * 7 6 4 10 10 C 1.33893 * 123.68094 * 0.02562 * 9 7 6 11 11 O 1.21561 * 118.92484 * 180.02562 * 10 9 7 12 12 N 1.34706 * 122.13696 * 0.02818 * 10 9 7 13 13 C 1.47259 * 118.46320 * 359.95046 * 12 10 9 14 14 H 1.09006 * 107.95903 * 238.18045 * 13 12 10 15 15 C 1.50703 * 107.95462 * 121.90809 * 13 12 10 16 16 C 1.38195 * 120.00811 * 326.17783 * 15 13 12 17 17 C 1.38273 * 120.17257 * 180.23503 * 16 15 13 18 18 C 1.38280 * 120.18295 * 359.79179 * 17 16 15 19 19 C 1.38521 * 120.01085 * 359.97438 * 18 17 16 20 20 O 1.35957 * 120.08436 * 179.97438 * 19 18 17 21 21 C 1.42898 * 117.00065 * 0.02562 * 20 19 18 22 22 C 1.38719 * 120.00695 * 145.94740 * 15 13 12 23 23 O 1.35803 * 120.09009 * 0.02797 * 22 15 13 24 24 C 1.34815 * 116.99311 * 272.67341 * 23 22 15 25 25 H 1.07995 * 120.00151 * 355.09174 * 24 23 22 26 26 C 1.38643 * 119.99854 * 175.08757 * 24 23 22 27 27 N 1.31571 * 119.99877 * 5.16905 * 26 24 23 28 28 Si 1.86795 * 120.00088 * 185.16685 * 26 24 23 29 29 H 1.48491 * 109.47258 * 59.99949 * 28 26 24 30 30 H 1.48497 * 109.46999 * 180.02562 * 28 26 24 31 31 H 1.48503 * 109.46910 * 299.99697 * 28 26 24 32 32 H 1.09001 * 109.47301 * 64.95678 * 1 2 3 33 33 H 1.09003 * 109.47380 * 184.95537 * 1 2 3 34 34 H 1.08998 * 109.47019 * 304.95687 * 1 2 3 35 35 H 1.09005 * 109.47196 * 239.99380 * 2 1 3 36 36 H 1.09006 * 109.46724 * 120.00118 * 2 1 3 37 37 H 1.08994 * 109.47443 * 93.87603 * 8 7 6 38 38 H 1.08996 * 109.47304 * 213.88175 * 8 7 6 39 39 H 1.09003 * 109.47056 * 333.87652 * 8 7 6 40 40 H 0.97002 * 118.15724 * 179.97438 * 9 7 6 41 41 H 0.96998 * 120.74820 * 180.02562 * 12 10 9 42 42 H 1.08004 * 119.91684 * 0.02562 * 16 15 13 43 43 H 1.08000 * 119.91099 * 179.76424 * 17 16 15 44 44 H 1.07999 * 119.99405 * 179.97438 * 18 17 16 45 45 H 1.08996 * 109.46919 * 180.02562 * 21 20 19 46 46 H 1.09007 * 109.46580 * 300.00212 * 21 20 19 47 47 H 1.09001 * 109.47156 * 59.99432 * 21 20 19 48 48 H 0.96999 * 119.99863 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3404 1.5254 -0.0981 5 8 4.0707 0.5680 -0.2739 6 6 3.8898 2.8248 0.0032 7 6 4.0675 3.4160 1.2044 8 6 3.6750 2.6788 2.4587 9 7 4.5976 4.6709 1.3007 10 6 4.9748 5.4008 0.2436 11 8 5.4374 6.5095 0.4295 12 7 4.8582 4.9465 -1.0192 13 6 4.2974 3.6017 -1.2323 14 1 5.0376 3.0104 -1.7715 15 6 3.0847 3.7387 -2.1165 16 6 2.2829 4.8602 -2.0210 17 6 1.1668 4.9873 -2.8271 18 6 0.8492 3.9949 -3.7363 19 6 1.6503 2.8698 -3.8418 20 8 1.3392 1.8929 -4.7347 21 6 0.1713 2.0922 -5.5336 22 6 2.7758 2.7414 -3.0298 23 8 3.5646 1.6403 -3.1284 24 6 4.6212 1.7171 -3.9621 25 1 4.7637 2.5957 -4.5737 26 6 5.5250 0.6683 -4.0342 27 7 5.2981 -0.4427 -3.3668 28 14 7.0648 0.8324 -5.0788 29 1 7.8778 1.9732 -4.5864 30 1 7.8601 -0.4184 -4.9882 31 1 6.6803 1.0724 -6.4930 32 1 -0.3634 0.4350 -0.9311 33 1 -0.3634 -1.0238 0.0888 34 1 -0.3633 0.5888 0.8422 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 4.5425 2.1534 2.8579 38 1 3.3087 3.3902 3.1988 39 1 2.8896 1.9594 2.2266 40 1 4.7062 5.0552 2.1847 41 1 5.1383 5.4924 -1.7705 42 1 2.5268 5.6380 -1.3124 43 1 0.5409 5.8637 -2.7463 44 1 -0.0236 4.0971 -4.3641 45 1 0.0382 1.2410 -6.2012 46 1 -0.7004 2.1854 -4.8858 47 1 0.2850 3.0023 -6.1227 48 1 5.9306 -1.1764 -3.4170 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004454608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:09 Heat of formation + Delta-G solvation = -139.503793 kcal Electronic energy + Delta-G solvation = -37623.758647 eV Core-core repulsion = 32838.402440 eV Total energy + Delta-G solvation = -4785.356208 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.66933 -41.25233 -41.12246 -39.08302 -38.33415 -37.75268 -37.40273 -36.08192 -33.97106 -33.60675 -32.25539 -31.52760 -30.56580 -29.72647 -28.06201 -27.01348 -26.15096 -24.99740 -23.89000 -23.12921 -22.80128 -22.18646 -20.40345 -19.91255 -19.39660 -18.91779 -18.26950 -17.93496 -17.80331 -17.45409 -17.36044 -16.91209 -16.66859 -16.54984 -16.38044 -16.24574 -15.59642 -15.38871 -15.05773 -14.91556 -14.75214 -14.61693 -14.40287 -14.21042 -13.79442 -13.62872 -13.50148 -13.31806 -13.22950 -13.11170 -12.91920 -12.75778 -12.63890 -12.44493 -12.33150 -12.24897 -12.20031 -11.90914 -11.87363 -11.63647 -11.52327 -11.46348 -11.30360 -10.64975 -10.20676 -9.51805 -9.18179 -8.89550 -8.08455 -5.81822 0.18312 0.40259 0.53863 1.17154 1.34848 1.41096 1.46904 1.47598 1.85810 2.19265 2.30915 2.36913 2.58949 2.80801 3.20984 3.35993 3.71266 3.80690 3.89919 4.00553 4.06499 4.14321 4.22984 4.29206 4.32084 4.40456 4.43460 4.44858 4.46880 4.50139 4.58491 4.62731 4.69260 4.83595 4.93077 4.95826 4.98872 5.08219 5.13364 5.19034 5.24775 5.39861 5.45777 5.59530 5.64252 5.72061 5.81151 5.93040 6.21788 6.27018 6.62567 6.97841 7.13933 7.30769 8.20734 9.10451 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.006635 B = 0.005116 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4218.817328 B = 5472.029120 C = 6054.932188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.056 3.944 3 O -0.350 6.350 4 C 0.549 3.451 5 O -0.503 6.503 6 C -0.267 4.267 7 C 0.211 3.789 8 C -0.129 4.129 9 N -0.633 5.633 10 C 0.710 3.290 11 O -0.600 6.600 12 N -0.700 5.700 13 C 0.253 3.747 14 H 0.063 0.937 15 C -0.110 4.110 16 C -0.126 4.126 17 C -0.093 4.093 18 C -0.190 4.190 19 C 0.077 3.923 20 O -0.336 6.336 21 C 0.019 3.981 22 C 0.071 3.929 23 O -0.247 6.247 24 C -0.369 4.369 25 H 0.058 0.942 26 C -0.022 4.022 27 N -0.905 5.905 28 Si 0.986 3.014 29 H -0.267 1.267 30 H -0.279 1.279 31 H -0.267 1.267 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.442 0.558 41 H 0.435 0.565 42 H 0.132 0.868 43 H 0.163 0.837 44 H 0.157 0.843 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.196 9.234 9.736 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.019 4.019 3 O -0.267 6.267 4 C 0.392 3.608 5 O -0.389 6.389 6 C -0.275 4.275 7 C 0.108 3.892 8 C -0.185 4.185 9 N -0.277 5.277 10 C 0.410 3.590 11 O -0.479 6.479 12 N -0.358 5.358 13 C 0.147 3.853 14 H 0.081 0.919 15 C -0.112 4.112 16 C -0.145 4.145 17 C -0.111 4.111 18 C -0.209 4.209 19 C 0.032 3.968 20 O -0.250 6.250 21 C -0.075 4.075 22 C 0.025 3.975 23 O -0.160 6.160 24 C -0.446 4.446 25 H 0.075 0.925 26 C -0.218 4.218 27 N -0.547 5.547 28 Si 0.809 3.191 29 H -0.192 1.192 30 H -0.204 1.204 31 H -0.192 1.192 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.146 0.854 39 H 0.099 0.901 40 H 0.284 0.716 41 H 0.277 0.723 42 H 0.150 0.850 43 H 0.180 0.820 44 H 0.174 0.826 45 H 0.124 0.876 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.622 8.911 9.787 17.614 hybrid contribution 1.033 -0.267 -1.364 1.732 sum -10.589 8.645 8.423 16.056 Atomic orbital electron populations 1.21747 0.89919 1.04252 1.03255 1.22733 0.97370 0.80624 1.01154 1.86236 1.24047 1.32385 1.84012 1.18691 0.80797 0.88799 0.72554 1.91018 1.61435 1.44021 1.42441 1.18665 1.18234 0.96455 0.94180 1.20039 0.89165 0.84210 0.95797 1.21301 1.03798 1.01164 0.92253 1.41834 1.61239 1.14069 1.10606 1.15697 0.78204 0.83475 0.81594 1.91004 1.52080 1.20132 1.84702 1.45224 1.66058 1.17570 1.06969 1.17896 0.93173 0.82435 0.91777 0.91883 1.20375 0.98164 0.94754 0.97937 1.20787 0.95685 0.96748 1.01267 1.21159 0.96568 0.98961 0.94407 1.21409 1.01674 0.93947 1.03863 1.19929 0.96252 0.89739 0.90923 1.86266 1.46330 1.42752 1.49657 1.23299 0.85800 1.03921 0.94518 1.18711 0.92489 0.90354 0.95916 1.83971 1.38670 1.30402 1.62911 1.20898 1.01637 1.03397 1.18650 0.92453 1.25932 1.01251 0.94744 0.99858 1.70243 1.36594 1.04461 1.43400 0.85126 0.77893 0.77754 0.78362 1.19218 1.20428 1.19193 0.93101 0.88304 0.89612 0.95291 0.90637 0.87705 0.85381 0.90109 0.71601 0.72328 0.85046 0.81980 0.82560 0.87625 0.91232 0.91550 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 10.28 71.98 0.74 -2.55 16 2 C 0.06 1.92 6.19 71.98 0.45 2.37 16 3 O -0.35 -13.39 9.61 -58.56 -0.56 -13.96 16 4 C 0.55 23.67 4.04 68.61 0.28 23.94 16 5 O -0.50 -26.70 16.77 19.22 0.32 -26.38 16 6 C -0.27 -10.00 5.12 -19.54 -0.10 -10.10 16 7 C 0.21 5.59 6.84 41.09 0.28 5.87 16 8 C -0.13 -2.23 9.70 71.24 0.69 -1.54 16 9 N -0.63 -14.91 5.14 -313.43 -1.61 -16.52 16 10 C 0.71 21.47 8.63 179.35 1.55 23.02 16 11 O -0.60 -20.39 17.94 -3.91 -0.07 -20.46 16 12 N -0.70 -22.94 4.26 -463.02 -1.97 -24.92 16 13 C 0.25 10.17 3.17 43.62 0.14 10.31 16 14 H 0.06 3.23 6.52 -2.38 -0.02 3.21 16 15 C -0.11 -4.45 4.66 -19.76 -0.09 -4.54 16 16 C -0.13 -4.03 9.27 22.27 0.21 -3.83 16 17 C -0.09 -2.56 10.04 22.29 0.22 -2.34 16 18 C -0.19 -5.89 9.04 22.35 0.20 -5.69 16 19 C 0.08 3.27 6.70 22.61 0.15 3.42 16 20 O -0.34 -14.61 10.28 -79.29 -0.82 -15.43 16 21 C 0.02 0.52 9.81 113.37 1.11 1.63 16 22 C 0.07 3.44 5.14 22.66 0.12 3.55 16 23 O -0.25 -14.56 7.99 -9.41 -0.08 -14.64 16 24 C -0.37 -22.29 8.73 67.92 0.59 -21.70 16 25 H 0.06 3.37 7.76 -2.91 -0.02 3.35 16 26 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 27 N -0.91 -59.04 13.68 21.61 0.30 -58.74 16 28 Si 0.99 47.24 29.55 68.60 2.03 49.27 16 29 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 30 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 31 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.03 1.27 7.96 -2.38 -0.02 1.25 16 36 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.64 6.49 -2.39 -0.02 1.62 16 40 H 0.44 7.00 8.65 -92.71 -0.80 6.20 16 41 H 0.43 13.27 8.93 -92.71 -0.83 12.44 16 42 H 0.13 3.68 7.45 -2.91 -0.02 3.65 16 43 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.16 3.62 6.30 -2.91 -0.02 3.60 16 45 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.07 1.56 7.66 -2.38 -0.02 1.55 16 47 H 0.07 1.54 7.66 -2.39 -0.02 1.52 16 48 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -91.19 408.14 3.95 -87.23 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.59 Total: 33.53 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 7.00 Total: 21.01 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -3.29 Total: -100.18 kcal Atomic # 8 Polarization: -89.66 SS G_CDS: -1.20 Total: -90.86 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -91.19 3.95 -87.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004454608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.271 kcal (2) G-P(sol) polarization free energy of solvation -91.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds