Wall clock time and date at job start Tue Mar 31 2020 06:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47477 * 2 1 4 4 C 1.34943 * 117.00311 * 184.86495 * 3 2 1 5 5 O 1.21681 * 120.00022 * 354.81581 * 4 3 2 6 6 C 1.41461 * 120.00038 * 174.81363 * 4 3 2 7 7 C 1.35044 * 121.13048 * 173.27983 * 6 4 3 8 8 C 1.50703 * 119.46355 * 0.02562 * 7 6 4 9 9 N 1.36559 * 121.07249 * 179.77342 * 7 6 4 10 10 C 1.33901 * 123.67718 * 0.53069 * 9 7 6 11 11 O 1.21555 * 118.92363 * 179.74195 * 10 9 7 12 12 N 1.34770 * 122.14872 * 359.46111 * 10 9 7 13 13 C 1.47265 * 118.42434 * 0.25886 * 12 10 9 14 14 H 1.09002 * 107.95347 * 121.87948 * 13 12 10 15 15 C 1.50693 * 107.95460 * 238.11679 * 13 12 10 16 16 C 1.38200 * 120.00847 * 102.86324 * 15 13 12 17 17 C 1.38280 * 120.17019 * 179.79027 * 16 15 13 18 18 C 1.38279 * 120.18498 * 0.45994 * 17 16 15 19 19 C 1.38527 * 120.01168 * 359.79294 * 18 17 16 20 20 O 1.35945 * 120.08501 * 179.97438 * 19 18 17 21 21 C 1.42892 * 116.99930 * 0.02562 * 20 19 18 22 22 C 1.38719 * 120.00875 * 283.13357 * 15 13 12 23 23 O 1.35801 * 120.08627 * 359.96036 * 22 15 13 24 24 C 1.34809 * 117.00325 * 96.29237 * 23 22 15 25 25 H 1.08001 * 119.99274 * 4.98695 * 24 23 22 26 26 C 1.38637 * 120.00099 * 184.98711 * 24 23 22 27 27 N 1.31563 * 120.00385 * 5.08734 * 26 24 23 28 28 Si 1.86805 * 119.99763 * 185.08140 * 26 24 23 29 29 H 1.48496 * 109.46933 * 60.00056 * 28 26 24 30 30 H 1.48501 * 109.46688 * 180.02562 * 28 26 24 31 31 H 1.48497 * 109.47042 * 300.00123 * 28 26 24 32 32 H 1.09004 * 109.47342 * 64.95461 * 1 2 3 33 33 H 1.08998 * 109.47341 * 184.96004 * 1 2 3 34 34 H 1.09007 * 109.46811 * 304.96092 * 1 2 3 35 35 H 1.09007 * 109.46914 * 240.00378 * 2 1 3 36 36 H 1.08998 * 109.47273 * 120.00563 * 2 1 3 37 37 H 1.09001 * 109.47169 * 84.54657 * 8 7 6 38 38 H 1.08998 * 109.47163 * 204.54907 * 8 7 6 39 39 H 1.09008 * 109.47177 * 324.54941 * 8 7 6 40 40 H 0.97000 * 118.15957 * 180.27335 * 9 7 6 41 41 H 0.96999 * 120.78854 * 180.23580 * 12 10 9 42 42 H 1.08004 * 119.91303 * 359.97438 * 16 15 13 43 43 H 1.07998 * 119.90838 * 180.23355 * 17 16 15 44 44 H 1.07996 * 119.99487 * 179.76921 * 18 17 16 45 45 H 1.09002 * 109.47411 * 299.99593 * 21 20 19 46 46 H 1.09000 * 109.47174 * 60.00326 * 21 20 19 47 47 H 1.09002 * 109.47389 * 179.97438 * 21 20 19 48 48 H 0.96994 * 120.00446 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3401 1.5255 -0.1020 5 8 4.0849 0.5633 -0.0935 6 6 3.8724 2.8309 -0.2188 7 6 5.2050 3.0469 -0.1872 8 6 6.1419 1.8776 -0.0253 9 7 5.7178 4.3072 -0.3046 10 6 4.9644 5.4050 -0.4464 11 8 5.5124 6.4861 -0.5388 12 7 3.6187 5.3499 -0.4957 13 6 2.9664 4.0344 -0.3832 14 1 2.2913 4.0662 0.4720 15 6 2.1320 3.8224 -1.6199 16 6 2.5854 2.9893 -2.6251 17 6 1.8204 2.7890 -3.7595 18 6 0.6022 3.4283 -3.8985 19 6 0.1428 4.2690 -2.8979 20 8 -1.0544 4.8988 -3.0333 21 6 -1.7875 4.6475 -4.2338 22 6 0.9112 4.4676 -1.7522 23 8 0.4658 5.2903 -0.7678 24 6 0.7011 6.6091 -0.9191 25 1 1.1504 6.9763 -1.8299 26 6 0.3665 7.4937 0.0946 27 7 -0.0874 7.0379 1.2423 28 14 0.5603 9.3328 -0.1690 29 1 -0.2852 9.7607 -1.3123 30 1 0.1382 10.0558 1.0575 31 1 1.9826 9.6438 -0.4616 32 1 -0.3634 0.4351 -0.9311 33 1 -0.3634 -1.0238 0.0888 34 1 -0.3633 0.5889 0.8423 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 6.3329 1.4275 -0.9994 38 1 7.0816 2.2220 0.4064 39 1 5.6887 1.1375 0.6344 40 1 6.6816 4.4133 -0.2803 41 1 3.0923 6.1576 -0.6023 42 1 3.5383 2.4912 -2.5231 43 1 2.1771 2.1341 -4.5408 44 1 0.0090 3.2725 -4.7874 45 1 -1.1942 4.9585 -5.0937 46 1 -2.0066 3.5824 -4.3095 47 1 -2.7212 5.2096 -4.2138 48 1 -0.3212 7.6568 1.9516 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004454609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:14 Heat of formation + Delta-G solvation = -116.145783 kcal Electronic energy + Delta-G solvation = -37246.896391 eV Core-core repulsion = 32462.553063 eV Total energy + Delta-G solvation = -4784.343328 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.44638 -40.06635 -39.68983 -37.56218 -37.28737 -36.27367 -35.96983 -34.62382 -32.22254 -31.99517 -31.34658 -30.15463 -29.12060 -28.45867 -26.89430 -25.08465 -24.59449 -23.98165 -22.68154 -21.76302 -21.54727 -20.75998 -19.29050 -18.15703 -17.73748 -17.37385 -16.84124 -16.69230 -16.42435 -16.16527 -16.00395 -15.55790 -15.33583 -15.14779 -14.94717 -14.59162 -14.16272 -14.04259 -13.73576 -13.67985 -13.37454 -13.35721 -13.23488 -13.06963 -12.95869 -12.48975 -11.94451 -11.83066 -11.77324 -11.71829 -11.60424 -11.43241 -11.33774 -11.31183 -10.99929 -10.80108 -10.63107 -10.38723 -10.29863 -10.25213 -10.09631 -9.93361 -9.63559 -8.99236 -8.25257 -8.14775 -7.98428 -7.38396 -6.11237 -3.79733 0.98642 1.74739 1.98804 2.64737 2.97278 3.24231 3.29268 3.32044 3.33387 3.33793 3.79293 3.83172 4.16824 4.33151 4.43757 4.94888 4.97229 5.08321 5.15804 5.18154 5.22154 5.24410 5.31937 5.38395 5.42917 5.43296 5.45316 5.50506 5.65562 5.74898 5.79298 5.82580 5.88302 5.93407 5.95137 5.99676 6.16673 6.27934 6.38564 6.62468 6.72409 6.77965 6.81042 6.87246 7.04108 7.26278 7.37369 7.45165 7.75672 8.00051 8.04623 8.26495 8.61002 9.32300 10.05598 11.06626 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007360 B = 0.005031 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3803.214936 B = 5564.541133 C = 7492.084902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 O -0.333 6.333 4 C 0.542 3.458 5 O -0.530 6.530 6 C -0.275 4.275 7 C 0.244 3.756 8 C -0.135 4.135 9 N -0.648 5.648 10 C 0.697 3.303 11 O -0.576 6.576 12 N -0.688 5.688 13 C 0.242 3.758 14 H 0.105 0.895 15 C -0.094 4.094 16 C -0.127 4.127 17 C -0.115 4.115 18 C -0.200 4.200 19 C 0.092 3.908 20 O -0.290 6.290 21 C 0.027 3.973 22 C 0.131 3.869 23 O -0.223 6.223 24 C -0.368 4.368 25 H 0.066 0.934 26 C 0.038 3.962 27 N -0.871 5.871 28 Si 0.920 3.080 29 H -0.275 1.275 30 H -0.281 1.281 31 H -0.272 1.272 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.423 0.577 41 H 0.444 0.556 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.093 0.907 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.897 -13.699 -5.970 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 O -0.248 6.248 4 C 0.392 3.608 5 O -0.424 6.424 6 C -0.284 4.284 7 C 0.138 3.862 8 C -0.191 4.191 9 N -0.291 5.291 10 C 0.397 3.603 11 O -0.453 6.453 12 N -0.350 5.350 13 C 0.137 3.863 14 H 0.122 0.878 15 C -0.096 4.096 16 C -0.146 4.146 17 C -0.133 4.133 18 C -0.219 4.219 19 C 0.046 3.954 20 O -0.202 6.202 21 C -0.069 4.069 22 C 0.084 3.916 23 O -0.135 6.135 24 C -0.444 4.444 25 H 0.084 0.916 26 C -0.163 4.163 27 N -0.511 5.511 28 Si 0.746 3.254 29 H -0.201 1.201 30 H -0.206 1.206 31 H -0.197 1.197 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.139 0.861 40 H 0.262 0.738 41 H 0.292 0.708 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.112 0.888 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.966 -13.218 -5.499 15.510 hybrid contribution 0.052 0.967 -0.743 1.221 sum 6.018 -12.251 -6.242 15.009 Atomic orbital electron populations 1.21794 0.92784 1.02316 1.04110 1.22543 0.95452 0.81042 1.01732 1.86340 1.23676 1.31319 1.83489 1.18413 0.80879 0.88439 0.73019 1.90774 1.59004 1.42929 1.49740 1.18760 0.92231 0.93597 1.23861 1.20132 0.93496 0.86157 0.86414 1.21575 0.97107 0.95024 1.05419 1.42387 1.11570 1.04233 1.70866 1.15905 0.83114 0.83225 0.78031 1.91010 1.71342 1.25775 1.57199 1.45889 1.03507 1.10928 1.74698 1.18263 0.90764 0.80025 0.97240 0.87757 1.20141 0.93376 0.99666 0.96403 1.20667 0.99679 1.00430 0.93860 1.20609 0.94505 1.00478 0.97711 1.21028 0.99119 1.02224 0.99508 1.19811 0.86949 0.94056 0.94572 1.86337 1.29151 1.65638 1.39100 1.22967 0.96235 1.00837 0.86818 1.18253 0.90222 0.95310 0.87811 1.83916 1.75489 1.16239 1.37862 1.20755 1.42549 0.79103 1.02013 0.91625 1.24956 0.97849 0.98687 0.94805 1.70003 1.43292 1.34413 1.03383 0.86106 0.78896 0.82646 0.77752 1.20061 1.20643 1.19727 0.91477 0.90806 0.91095 0.91883 0.91918 0.88662 0.91364 0.86123 0.73808 0.70789 0.87075 0.86768 0.86240 0.93470 0.93450 0.88820 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 37.16 0.38 -1.37 16 2 C 0.07 0.85 6.12 37.16 0.23 1.08 16 3 O -0.33 -5.35 8.91 -41.16 -0.37 -5.72 16 4 C 0.54 8.39 6.33 31.96 0.20 8.59 16 5 O -0.53 -7.87 12.85 -19.41 -0.25 -8.12 16 6 C -0.28 -4.32 3.85 -104.12 -0.40 -4.72 16 7 C 0.24 3.17 6.84 -81.62 -0.56 2.61 16 8 C -0.13 -1.27 8.72 36.01 0.31 -0.96 16 9 N -0.65 -8.76 5.14 -12.86 -0.07 -8.83 16 10 C 0.70 12.82 8.63 -87.70 -0.76 12.07 16 11 O -0.58 -12.24 17.94 5.32 0.10 -12.15 16 12 N -0.69 -13.87 5.34 -60.29 -0.32 -14.19 16 13 C 0.24 4.62 2.81 -69.41 -0.20 4.43 16 14 H 0.10 2.30 7.75 -51.93 -0.40 1.89 16 15 C -0.09 -1.84 4.41 -104.46 -0.46 -2.30 16 16 C -0.13 -2.16 8.41 -39.58 -0.33 -2.49 16 17 C -0.11 -1.79 10.04 -39.55 -0.40 -2.19 16 18 C -0.20 -3.31 9.04 -39.46 -0.36 -3.67 16 19 C 0.09 1.89 6.69 -39.05 -0.26 1.63 16 20 O -0.29 -6.00 10.28 -33.98 -0.35 -6.35 16 21 C 0.03 0.38 9.81 101.05 0.99 1.38 16 22 C 0.13 2.97 5.58 -38.98 -0.22 2.75 16 23 O -0.22 -5.99 8.65 -14.46 -0.13 -6.11 16 24 C -0.37 -9.99 7.90 30.88 0.24 -9.74 16 25 H 0.07 1.76 7.76 -52.49 -0.41 1.35 16 26 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 27 N -0.87 -25.49 13.68 55.48 0.76 -24.73 16 28 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 29 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 31 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 35 H 0.06 0.75 8.08 -51.92 -0.42 0.33 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.46 8.06 -51.93 -0.42 0.04 16 39 H 0.12 1.31 5.67 -51.92 -0.29 1.01 16 40 H 0.42 4.35 8.58 -40.82 -0.35 4.00 16 41 H 0.44 10.10 6.91 -40.82 -0.28 9.82 16 42 H 0.11 1.73 6.49 -52.48 -0.34 1.39 16 43 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.12 1.63 6.30 -52.49 -0.33 1.30 16 45 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 46 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 47 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 400.77 15.07 6.04 6.04 Total: -1.00 -34.13 400.77 -7.42 -41.54 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -6.14 Total: 14.09 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -1.67 Total: 8.05 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.37 Total: -47.75 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.99 Total: -38.45 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.13 -7.42 -41.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004454609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.602 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds