Wall clock time and date at job start Tue Mar 31 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86800 * 119.99883 * 2 1 4 4 H 1.48506 * 109.47178 * 270.00439 * 3 2 1 5 5 H 1.48500 * 109.46894 * 30.00006 * 3 2 1 6 6 H 1.48494 * 109.47120 * 150.00356 * 3 2 1 7 7 C 1.38904 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00184 * 179.97438 * 7 2 1 9 9 O 1.34784 * 119.99895 * 359.97438 * 7 2 1 10 10 C 1.34718 * 117.00107 * 180.02562 * 9 7 2 11 11 O 1.21517 * 119.99917 * 0.02562 * 10 9 7 12 12 C 1.47666 * 119.99886 * 179.97438 * 10 9 7 13 13 C 1.46395 * 121.18598 * 269.99781 * 12 10 9 14 14 C 1.39792 * 121.53353 * 0.21905 * 13 12 10 15 15 C 1.36438 * 119.62884 * 180.14946 * 14 13 12 16 16 C 1.39273 * 120.79720 * 359.47173 * 15 14 13 17 17 C 1.36129 * 121.07341 * 0.30870 * 16 15 14 18 18 C 1.40733 * 119.72611 * 0.02562 * 17 16 15 19 19 N 1.33264 * 121.12239 * 179.85358 * 18 17 16 20 20 C 1.32438 * 122.63464 * 180.02562 * 19 18 17 21 21 C 1.38927 * 121.17868 * 90.02937 * 12 10 9 22 22 C 1.50342 * 118.83293 * 359.65982 * 21 12 10 23 23 C 1.52626 * 111.25915 * 157.64817 * 22 21 12 24 24 C 1.53418 * 109.29435 * 54.39889 * 23 22 21 25 25 C 1.47735 * 118.65101 * 179.52529 * 20 19 18 26 26 C 1.34994 * 121.11773 * 348.19299 * 25 20 19 27 27 C 1.46296 * 119.99846 * 350.12771 * 26 25 20 28 28 C 1.36697 * 125.99721 * 145.54182 * 27 26 25 29 29 C 1.40556 * 106.70346 * 179.97438 * 28 27 26 30 30 C 1.34995 * 107.11550 * 359.97438 * 29 28 27 31 31 O 1.34223 * 108.78665 * 359.75679 * 30 29 28 32 32 H 0.96995 * 120.00494 * 359.97438 * 1 2 3 33 33 H 1.07996 * 120.18625 * 359.89695 * 14 13 12 34 34 H 1.07999 * 119.60031 * 179.73854 * 15 14 13 35 35 H 1.07999 * 119.45828 * 180.32871 * 16 15 14 36 36 H 1.08007 * 120.13808 * 180.02562 * 17 16 15 37 37 H 1.08996 * 109.12550 * 278.11086 * 22 21 12 38 38 H 1.08999 * 109.12071 * 37.19476 * 22 21 12 39 39 H 1.08992 * 109.50241 * 174.34377 * 23 22 21 40 40 H 1.09005 * 109.50020 * 294.42207 * 23 22 21 41 41 H 1.09004 * 109.85101 * 55.21048 * 24 23 22 42 42 H 1.08995 * 109.85529 * 176.14332 * 24 23 22 43 43 H 1.07996 * 120.00010 * 170.12201 * 26 25 20 44 44 H 1.08002 * 126.64790 * 359.97438 * 28 27 26 45 45 H 1.08000 * 126.44140 * 180.02562 * 29 28 27 46 46 H 1.08006 * 125.60271 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4949 2.0465 -1.4001 5 1 1.4449 2.6526 0.7000 6 1 3.5451 1.4402 0.6999 7 6 2.0081 -1.2029 -0.0005 8 1 3.0882 -1.2029 -0.0010 9 8 1.3343 -2.3702 -0.0005 10 6 2.0680 -3.5000 -0.0005 11 8 3.2815 -3.4364 -0.0001 12 6 1.3976 -4.8157 0.0000 13 6 1.0540 -5.4909 1.2527 14 6 1.3413 -4.9176 2.4949 15 6 1.0065 -5.5826 3.6383 16 6 0.3718 -6.8211 3.5831 17 6 0.0736 -7.4052 2.3903 18 6 0.4101 -6.7521 1.1899 19 7 0.1339 -7.2998 0.0069 20 6 0.4374 -6.7122 -1.1406 21 6 1.0712 -5.4571 -1.1883 22 6 1.4055 -4.7847 -2.4907 23 6 1.4978 -5.7975 -3.6287 24 6 0.1997 -6.6129 -3.6883 25 6 0.0999 -7.4039 -2.4016 26 6 -0.2847 -8.6978 -2.4063 27 6 -0.1675 -9.5001 -1.1886 28 6 -1.0232 -10.4902 -0.7933 29 6 -0.5302 -10.9874 0.4255 30 6 0.5884 -10.2897 0.7159 31 8 0.8074 -9.3973 -0.2625 32 1 -0.4850 0.8400 0.0004 33 1 1.8292 -3.9557 2.5492 34 1 1.2325 -5.1412 4.5977 35 1 0.1118 -7.3260 4.5017 36 1 -0.4192 -8.3660 2.3651 37 1 0.6309 -4.0544 -2.7247 38 1 2.3614 -4.2705 -2.3920 39 1 1.6410 -5.2720 -4.5728 40 1 2.3405 -6.4664 -3.4531 41 1 -0.6549 -5.9422 -3.7781 42 1 0.2279 -7.2922 -4.5402 43 1 -0.6790 -9.1407 -3.3089 44 1 -1.9067 -10.8254 -1.3161 45 1 -0.9643 -11.7793 1.0178 46 1 1.2073 -10.4292 1.5899 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004469905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:07 Heat of formation + Delta-G solvation = 19.939246 kcal Electronic energy + Delta-G solvation = -34335.571083 eV Core-core repulsion = 29929.863675 eV Total energy + Delta-G solvation = -4405.707408 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.130 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.21524 -40.70403 -38.90363 -38.24597 -35.45516 -35.38708 -34.19419 -32.82041 -32.37308 -32.16445 -30.21290 -29.83790 -28.74114 -26.17608 -25.82664 -24.64765 -23.44030 -22.77516 -21.68563 -21.32070 -20.56892 -20.28412 -19.08048 -17.90250 -17.82950 -17.47061 -16.80784 -16.46285 -15.78867 -15.51554 -15.03787 -14.73757 -14.56295 -14.46561 -14.41770 -14.28275 -14.05700 -13.82634 -13.57643 -13.25311 -13.02094 -12.85177 -12.66320 -12.55670 -12.46390 -12.32279 -11.90664 -11.74141 -11.69003 -11.50913 -11.29645 -11.07551 -10.88771 -10.63591 -10.53547 -10.50622 -10.17807 -9.88073 -9.75937 -9.71431 -9.51030 -9.06314 -8.70560 -8.48426 -8.00671 -7.53805 -6.53434 -4.21612 0.20609 0.83562 1.45434 2.09686 2.39156 2.87798 2.95718 3.12038 3.17761 3.22375 3.27271 3.36587 3.77350 4.09421 4.25442 4.29842 4.53880 4.64315 4.81480 4.85583 4.99424 5.02605 5.04843 5.07562 5.14367 5.16337 5.19660 5.32291 5.40646 5.53421 5.56150 5.61112 5.68009 5.78687 5.83923 5.90075 5.92541 6.04677 6.12595 6.14890 6.23908 6.24695 6.34415 6.35890 6.39619 6.48774 6.57555 6.65376 6.70895 6.77370 6.99082 7.26280 7.39640 7.78834 8.06502 8.48917 8.93637 9.66984 10.63299 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.003273 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.468119 B = 8553.741814 C =10270.067494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.047 3.953 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.388 4.388 8 H 0.099 0.901 9 O -0.197 6.197 10 C 0.439 3.561 11 O -0.538 6.538 12 C -0.016 4.016 13 C -0.071 4.071 14 C -0.083 4.083 15 C -0.118 4.118 16 C -0.106 4.106 17 C -0.093 4.093 18 C 0.133 3.867 19 N -0.445 5.445 20 C 0.191 3.809 21 C -0.084 4.084 22 C -0.088 4.088 23 C -0.112 4.112 24 C -0.081 4.081 25 C -0.057 4.057 26 C -0.064 4.064 27 C 0.053 3.947 28 C -0.207 4.207 29 C -0.220 4.220 30 C -0.038 4.038 31 O -0.140 6.140 32 H 0.272 0.728 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.150 0.850 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.659 -17.977 -1.795 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.159 4.159 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.464 4.464 8 H 0.116 0.884 9 O -0.103 6.103 10 C 0.285 3.715 11 O -0.436 6.436 12 C -0.025 4.025 13 C -0.073 4.073 14 C -0.101 4.101 15 C -0.136 4.136 16 C -0.125 4.125 17 C -0.111 4.111 18 C 0.011 3.989 19 N -0.153 5.153 20 C 0.040 3.960 21 C -0.086 4.086 22 C -0.125 4.125 23 C -0.149 4.149 24 C -0.118 4.118 25 C -0.058 4.058 26 C -0.084 4.084 27 C 0.002 3.998 28 C -0.226 4.226 29 C -0.239 4.239 30 C -0.107 4.107 31 O -0.033 6.033 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.167 0.833 44 H 0.160 0.840 45 H 0.158 0.842 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.704 -18.344 -1.654 18.616 hybrid contribution 0.579 1.536 0.403 1.690 sum -2.125 -16.808 -1.251 16.988 Atomic orbital electron populations 1.69962 1.06121 1.28048 1.44992 1.25393 0.95796 0.98893 0.95812 0.85666 0.79129 0.79482 0.78924 1.19673 1.20177 1.18925 1.21310 0.92540 0.79536 1.52988 0.88387 1.84005 1.38925 1.13002 1.74338 1.20370 0.85904 0.84995 0.80246 1.90703 1.14460 1.87434 1.50958 1.20650 0.96338 0.93090 0.92405 1.19654 0.99448 0.95265 0.92912 1.21016 0.98088 0.99889 0.91143 1.20928 0.99066 0.95168 0.98405 1.20836 0.98479 0.95536 0.97674 1.20719 1.00289 1.00121 0.90006 1.18539 0.97289 0.91075 0.92000 1.67729 1.17857 1.32798 0.96932 1.19699 0.94426 0.90283 0.91564 1.20796 0.97836 0.94908 0.95097 1.20463 1.03799 0.97938 0.90309 1.21493 0.97273 0.97579 0.98592 1.20866 0.99155 0.98542 0.93254 1.21072 0.98555 0.93755 0.92395 1.21034 1.01264 0.92225 0.93865 1.20247 0.90815 0.97561 0.91153 1.21717 1.02078 1.00052 0.98761 1.21541 0.98742 1.04441 0.99215 1.23956 1.00114 0.92785 0.93865 1.84290 1.43833 1.47905 1.27285 0.91779 0.85026 0.85427 0.85474 0.85039 0.89080 0.89571 0.90245 0.91323 0.89645 0.89825 0.83265 0.84043 0.84181 0.79246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.51 13.67 55.49 0.76 -23.75 16 2 C 0.05 1.28 5.50 -17.51 -0.10 1.18 16 3 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -11.19 9.65 30.98 0.30 -10.89 16 8 H 0.10 2.83 6.86 -52.48 -0.36 2.47 16 9 O -0.20 -5.62 9.75 -21.40 -0.21 -5.83 16 10 C 0.44 11.18 4.84 34.58 0.17 11.35 16 11 O -0.54 -14.69 16.35 -19.28 -0.32 -15.01 16 12 C -0.02 -0.35 5.95 -102.51 -0.61 -0.96 16 13 C -0.07 -1.42 5.90 -104.70 -0.62 -2.04 16 14 C -0.08 -1.54 9.47 -39.65 -0.38 -1.92 16 15 C -0.12 -1.72 9.97 -39.85 -0.40 -2.12 16 16 C -0.11 -1.37 9.94 -39.96 -0.40 -1.76 16 17 C -0.09 -1.36 9.91 -39.40 -0.39 -1.75 16 18 C 0.13 2.38 6.62 -84.96 -0.56 1.81 16 19 N -0.45 -7.80 5.52 -7.56 -0.04 -7.84 16 20 C 0.19 3.30 6.40 -82.80 -0.53 2.77 16 21 C -0.08 -1.60 5.82 -103.62 -0.60 -2.20 16 22 C -0.09 -1.47 5.19 -28.25 -0.15 -1.62 16 23 C -0.11 -1.36 5.91 -26.71 -0.16 -1.52 16 24 C -0.08 -0.86 6.01 -27.34 -0.16 -1.02 16 25 C -0.06 -0.76 5.68 -101.57 -0.58 -1.34 16 26 C -0.06 -0.75 9.79 -37.50 -0.37 -1.12 16 27 C 0.05 0.72 5.55 -36.90 -0.20 0.52 16 28 C -0.21 -2.47 10.86 -39.27 -0.43 -2.90 16 29 C -0.22 -2.46 10.88 -39.86 -0.43 -2.89 16 30 C -0.04 -0.45 11.25 29.58 0.33 -0.12 16 31 O -0.14 -2.07 7.59 4.39 0.03 -2.04 16 32 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.13 2.65 7.34 -52.49 -0.39 2.27 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.13 1.68 7.30 -52.48 -0.38 1.30 16 37 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 38 H 0.09 1.61 7.27 -51.93 -0.38 1.24 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 43 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 44 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 46 H 0.19 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -34.75 390.87 -10.45 -45.20 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.29 Total: 6.25 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -6.26 Total: -18.53 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.72 Total: -31.59 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.49 Total: -22.87 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.75 -10.45 -45.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004469905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.141 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds