Wall clock time and date at job start Tue Mar 31 2020 05:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35951 * 117.00052 * 2 1 4 4 C 1.38005 * 119.99206 * 0.02562 * 3 2 1 5 5 C 1.40182 * 119.82250 * 179.97438 * 4 3 2 6 6 C 1.46526 * 120.09491 * 180.02562 * 5 4 3 7 7 C 1.36590 * 119.99960 * 151.21774 * 6 5 4 8 8 C 1.43194 * 120.00128 * 352.78089 * 7 6 5 9 9 N 6.64332 * 111.37730 * 17.71983 * 2 1 3 10 10 C 1.47412 * 119.99869 * 172.78006 * 7 6 5 11 11 N 1.31281 * 125.14364 * 359.97432 * 10 7 6 12 12 C 1.35479 * 109.63999 * 180.02562 * 11 10 7 13 13 C 1.39901 * 133.35938 * 179.97438 * 12 11 10 14 14 C 1.36594 * 119.89044 * 180.02562 * 13 12 11 15 15 C 1.50696 * 119.66583 * 180.02562 * 14 13 12 16 16 C 1.38777 * 120.67170 * 359.94391 * 14 13 12 17 17 C 1.37917 * 120.47215 * 0.09228 * 16 14 13 18 18 C 1.38776 * 119.71893 * 359.93832 * 17 16 14 19 19 N 1.37039 * 125.14086 * 180.02562 * 10 7 6 20 20 H 0.97001 * 126.41030 * 359.97438 * 19 10 7 21 21 C 1.40234 * 119.80817 * 0.27537 * 5 4 3 22 22 C 1.37574 * 119.98085 * 359.43847 * 21 5 4 23 23 C 1.39118 * 120.17947 * 0.56552 * 22 21 5 24 24 O 1.35580 * 119.90111 * 179.69282 * 23 22 21 25 25 C 1.34746 * 117.00289 * 6.08473 * 24 23 22 26 26 H 1.07994 * 120.00115 * 354.90532 * 25 24 23 27 27 C 1.38698 * 119.99930 * 174.90841 * 25 24 23 28 28 N 1.31524 * 120.00150 * 179.97438 * 27 25 24 29 29 Si 1.86807 * 120.00264 * 359.97438 * 27 25 24 30 30 H 1.48493 * 109.47079 * 90.00042 * 29 27 25 31 31 H 1.48500 * 109.46974 * 210.00251 * 29 27 25 32 32 H 1.48497 * 109.46722 * 330.00181 * 29 27 25 33 33 H 1.08999 * 109.47802 * 59.99116 * 1 2 3 34 34 H 1.08999 * 109.47297 * 180.02562 * 1 2 3 35 35 H 1.09006 * 109.47147 * 299.99751 * 1 2 3 36 36 H 1.07995 * 120.08895 * 359.94894 * 4 3 2 37 37 H 1.07998 * 120.00187 * 331.21576 * 6 5 4 38 38 H 1.08000 * 120.05237 * 0.02892 * 13 12 11 39 39 H 1.08996 * 109.47088 * 89.99813 * 15 14 13 40 40 H 1.08992 * 109.47374 * 210.00384 * 15 14 13 41 41 H 1.09003 * 109.46946 * 330.00693 * 15 14 13 42 42 H 1.08009 * 119.76417 * 180.02562 * 16 14 13 43 43 H 1.07999 * 120.14456 * 180.21856 * 17 16 14 44 44 H 1.08004 * 120.00666 * 179.72675 * 21 5 4 45 45 H 1.08000 * 119.90585 * 180.27563 * 22 21 5 46 46 H 0.97000 * 120.00343 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2944 2.3686 0.0005 5 6 1.9345 3.6158 0.0011 6 6 1.1421 4.8483 0.0022 7 6 1.6452 5.9831 0.5723 8 6 2.8756 5.9323 1.3030 9 7 3.8505 5.8928 1.8829 10 6 0.9214 7.2599 0.4352 11 7 -0.2102 7.4217 -0.2104 12 6 -0.5943 8.7188 -0.1382 13 6 -1.6944 9.4241 -0.6378 14 6 -1.8118 10.7632 -0.3952 15 6 -2.9991 11.5177 -0.9353 16 6 -0.8497 11.4355 0.3452 17 6 0.2438 10.7614 0.8473 18 6 0.3813 9.4009 0.6110 19 7 1.3286 8.4579 0.9617 20 1 2.1315 8.6145 1.4830 21 6 3.3353 3.6803 -0.0048 22 6 4.0769 2.5216 0.0007 23 6 3.4411 1.2843 0.0001 24 8 4.1775 0.1459 -0.0009 25 6 5.5122 0.2806 0.1261 26 1 5.9567 1.2647 0.1398 27 6 6.3151 -0.8447 0.2391 28 7 7.6179 -0.7133 0.3625 29 14 5.5461 -2.5470 0.2160 30 1 5.4786 -3.0407 -1.1829 31 1 6.3730 -3.4747 1.0290 32 1 4.1756 -2.4787 0.7835 33 1 -0.3635 0.5139 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 -0.3634 0.5138 0.8901 36 1 0.2158 2.3137 0.0001 37 1 0.1604 4.8596 -0.4477 38 1 -2.4495 8.9106 -1.2144 39 1 -3.8062 11.4976 -0.2030 40 1 -2.7137 12.5508 -1.1332 41 1 -3.3364 11.0503 -1.8605 42 1 -0.9574 12.4944 0.5286 43 1 0.9876 11.2892 1.4258 44 1 3.8318 4.6395 -0.0088 45 1 5.1557 2.5728 0.0006 46 1 8.1794 -1.5003 0.4418 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004725886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:03 Heat of formation + Delta-G solvation = 85.507237 kcal Electronic energy + Delta-G solvation = -31390.372781 eV Core-core repulsion = 27019.801366 eV Total energy + Delta-G solvation = -4370.571415 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.137 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.20872 -40.03961 -38.29618 -37.99875 -37.49821 -36.00545 -33.90959 -33.20402 -32.67940 -31.81127 -30.09891 -29.82805 -28.92803 -27.14031 -26.42458 -25.61136 -23.97702 -22.89185 -22.08211 -21.85342 -21.16739 -20.56242 -18.74369 -18.19528 -18.02277 -17.29662 -16.67626 -16.12706 -15.69391 -15.54629 -15.44961 -15.23213 -14.83312 -14.65093 -14.25650 -14.16220 -14.06843 -14.00072 -13.90480 -13.72637 -13.57718 -13.18837 -12.85717 -12.65409 -12.50644 -12.45879 -12.17568 -12.11445 -11.92196 -11.70001 -11.67775 -11.61924 -11.18108 -11.03434 -10.96395 -10.88312 -10.84262 -10.37016 -10.16964 -9.74749 -9.69029 -9.09455 -8.41313 -8.33718 -8.05898 -7.15275 -6.70911 -4.28053 0.22123 0.99721 1.28494 1.91155 2.14886 2.57400 2.62034 2.72168 3.10954 3.13704 3.31026 3.50626 3.63314 3.69225 3.69381 4.05163 4.18834 4.28023 4.36507 4.43569 4.61197 4.80492 4.84447 4.90417 5.04263 5.16563 5.18983 5.23827 5.30778 5.32718 5.34960 5.36856 5.43976 5.49689 5.63477 5.65394 5.70273 5.80588 5.87375 5.98592 6.08916 6.17918 6.25878 6.32285 6.36800 6.57243 6.64301 6.72102 6.96396 7.07596 7.18806 7.38236 7.54167 7.66590 7.68366 7.87667 8.60735 9.21145 10.33724 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.001769 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.317659 B =15820.727742 C =17095.358471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.308 6.308 3 C 0.053 3.947 4 C -0.125 4.125 5 C -0.182 4.182 6 C 0.101 3.899 7 C -0.094 4.094 8 C 0.258 3.742 9 N -0.418 5.418 10 C 0.364 3.636 11 N -0.490 5.490 12 C 0.063 3.937 13 C -0.068 4.068 14 C -0.096 4.096 15 C -0.109 4.109 16 C -0.105 4.105 17 C -0.106 4.106 18 C 0.043 3.957 19 N -0.600 5.600 20 H 0.423 0.577 21 C -0.054 4.054 22 C -0.209 4.209 23 C 0.161 3.839 24 O -0.178 6.178 25 C -0.385 4.385 26 H 0.113 0.887 27 C 0.068 3.932 28 N -0.855 5.855 29 Si 0.906 3.094 30 H -0.269 1.269 31 H -0.279 1.279 32 H -0.252 1.252 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.131 0.869 37 H 0.154 0.846 38 H 0.129 0.871 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.144 0.856 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.134 18.157 -1.361 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.222 6.222 3 C 0.008 3.992 4 C -0.145 4.145 5 C -0.184 4.184 6 C 0.076 3.924 7 C -0.101 4.101 8 C -0.056 4.056 9 N -0.095 5.095 10 C 0.101 3.899 11 N -0.211 5.211 12 C -0.057 4.057 13 C -0.088 4.088 14 C -0.099 4.099 15 C -0.166 4.166 16 C -0.125 4.125 17 C -0.127 4.127 18 C -0.067 4.067 19 N -0.211 5.211 20 H 0.262 0.738 21 C -0.073 4.073 22 C -0.229 4.229 23 C 0.104 3.896 24 O -0.079 6.079 25 C -0.459 4.459 26 H 0.130 0.870 27 C -0.139 4.139 28 N -0.489 5.489 29 Si 0.730 3.270 30 H -0.194 1.194 31 H -0.204 1.204 32 H -0.175 1.175 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.149 0.851 37 H 0.171 0.829 38 H 0.147 0.853 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.162 0.838 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.834 16.951 -0.893 24.621 hybrid contribution 0.405 0.237 0.513 0.695 sum -17.429 17.188 -0.380 24.482 Atomic orbital electron populations 1.22959 0.79706 1.03286 1.00767 1.86185 1.20023 1.26180 1.89820 1.17978 0.89126 0.84762 1.07340 1.20827 0.98833 0.90376 1.04440 1.18141 0.92663 0.91477 1.16106 1.22618 0.96874 0.88510 0.84416 1.15019 0.92788 0.90824 1.11459 1.25196 0.92576 0.94417 0.93416 1.81302 1.10842 1.06421 1.10908 1.20889 0.91164 0.84876 0.92980 1.70638 1.10695 1.16726 1.23051 1.18994 0.96315 0.89711 1.00648 1.19868 0.95943 0.92762 1.00220 1.19354 0.97356 0.93485 0.99672 1.20738 0.95332 0.99618 1.00896 1.20744 0.93582 0.99603 0.98570 1.19941 0.99728 0.90048 1.02994 1.18888 0.92504 0.92128 1.03188 1.43146 1.22808 1.07628 1.47521 0.73849 1.21214 0.92349 0.97936 0.95804 1.20917 1.01314 0.90355 1.10304 1.18673 0.87772 0.86843 0.96291 1.83556 1.20684 1.27859 1.75845 1.20997 0.77095 0.97411 1.50385 0.86956 1.24583 0.94565 0.99994 0.94806 1.69624 1.03316 1.32379 1.43599 0.86139 0.80540 0.81065 0.79217 1.19436 1.20432 1.17526 0.93056 0.88893 0.93163 0.85094 0.82869 0.85280 0.91277 0.91600 0.91487 0.85420 0.86001 0.86508 0.83833 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.65 10.28 -34.20 -0.35 -6.01 16 3 C 0.05 1.01 6.70 -39.13 -0.26 0.74 16 4 C -0.13 -1.92 8.78 -38.94 -0.34 -2.26 16 5 C -0.18 -2.80 5.59 -105.08 -0.59 -3.39 16 6 C 0.10 1.26 9.49 -36.84 -0.35 0.91 16 7 C -0.09 -1.21 5.81 -104.83 -0.61 -1.82 16 8 C 0.26 3.76 11.23 -22.51 -0.25 3.51 16 9 N -0.42 -6.94 17.87 41.80 0.75 -6.20 16 10 C 0.36 4.61 7.72 -154.45 -1.19 3.41 16 11 N -0.49 -6.56 10.79 -8.77 -0.09 -6.65 16 12 C 0.06 0.78 7.22 -84.72 -0.61 0.17 16 13 C -0.07 -0.69 9.67 -39.55 -0.38 -1.08 16 14 C -0.10 -0.80 5.84 -105.02 -0.61 -1.41 16 15 C -0.11 -0.59 9.99 36.00 0.36 -0.23 16 16 C -0.11 -0.83 9.67 -39.50 -0.38 -1.21 16 17 C -0.11 -0.96 10.07 -39.50 -0.40 -1.35 16 18 C 0.04 0.48 7.30 -83.89 -0.61 -0.13 16 19 N -0.60 -6.71 6.13 -8.48 -0.05 -6.77 16 20 H 0.42 3.92 8.70 -40.82 -0.36 3.57 16 21 C -0.05 -0.96 8.28 -39.07 -0.32 -1.28 16 22 C -0.21 -4.34 9.14 -39.50 -0.36 -4.70 16 23 C 0.16 3.56 6.67 -38.72 -0.26 3.30 16 24 O -0.18 -4.52 8.35 -13.80 -0.12 -4.64 16 25 C -0.38 -10.29 9.94 30.90 0.31 -9.99 16 26 H 0.11 3.06 5.42 -52.49 -0.28 2.77 16 27 C 0.07 1.80 5.49 -17.51 -0.10 1.70 16 28 N -0.86 -23.39 13.96 55.48 0.77 -22.62 16 29 Si 0.91 20.72 28.62 -169.99 -4.86 15.86 16 30 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 31 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 32 H -0.25 -5.88 7.11 56.52 0.40 -5.48 16 33 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 36 H 0.13 1.54 6.28 -52.49 -0.33 1.21 16 37 H 0.15 1.58 7.75 -52.49 -0.41 1.17 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 41 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 42 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 1.98 5.29 -52.48 -0.28 1.70 16 45 H 0.14 3.13 5.62 -52.49 -0.29 2.84 16 46 H 0.29 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 400.99 15.07 6.04 6.04 Total: -1.00 -30.92 400.99 -8.72 -39.64 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.83 Total: 5.09 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -5.98 Total: -13.76 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 1.37 Total: -42.23 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.47 Total: -10.65 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.86 Total: 15.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.92 -8.72 -39.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004725886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.148 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds