Wall clock time and date at job start Tue Mar 31 2020 07:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47115 * 179.97438 * 9 7 2 11 11 C 1.38348 * 124.86426 * 89.99790 * 10 9 7 12 12 C 1.39170 * 132.32069 * 359.94429 * 11 10 9 13 13 C 1.37815 * 120.03926 * 180.02562 * 12 11 10 14 14 C 1.38658 * 120.58032 * 0.04677 * 13 12 11 15 15 C 1.37811 * 120.23238 * 359.95096 * 14 13 12 16 16 C 1.39298 * 119.78011 * 0.02562 * 15 14 13 17 17 C 1.47449 * 133.44418 * 179.97438 * 16 15 14 18 18 C 1.39296 * 133.44310 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.77268 * 179.97438 * 18 17 16 20 20 I 2.09501 * 119.88515 * 180.02562 * 19 18 17 21 21 C 1.38705 * 120.22242 * 0.02562 * 19 18 17 22 22 C 1.37803 * 120.57150 * 0.02562 * 21 19 18 23 23 C 1.38368 * 124.86155 * 269.69706 * 10 9 7 24 24 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 25 25 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 26 26 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 27 27 H 1.08003 * 119.97958 * 359.97438 * 12 11 10 28 28 H 1.07998 * 119.70614 * 180.02562 * 13 12 11 29 29 H 1.07996 * 119.88577 * 179.97438 * 14 13 12 30 30 H 1.08003 * 120.11179 * 180.02562 * 15 14 13 31 31 H 1.07998 * 120.11682 * 359.97438 * 18 17 16 32 32 H 1.08001 * 119.71120 * 180.02562 * 21 19 18 33 33 H 1.07997 * 119.97302 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 7 2.2030 -3.6126 0.0164 11 6 2.7169 -4.2087 1.1542 12 6 2.5171 -3.9675 2.5102 13 6 3.1739 -4.7311 3.4508 14 6 4.0376 -5.7429 3.0600 15 6 4.2484 -5.9970 1.7220 16 6 3.5907 -5.2330 0.7607 17 6 3.5902 -5.2400 -0.7138 18 6 4.2469 -6.0133 -1.6682 19 6 4.0344 -5.7723 -3.0090 20 53 5.0197 -6.9339 -4.4474 21 6 3.1704 -4.7635 -3.4086 22 6 2.5154 -3.9907 -2.4744 23 6 2.7124 -4.2227 -1.1163 24 1 -0.4850 0.8401 -0.0041 25 1 0.6241 -2.5528 0.9015 26 1 0.6247 -2.5609 -0.8785 27 1 1.8477 -3.1808 2.8254 28 1 3.0145 -4.5395 4.5017 29 1 4.5468 -6.3341 3.8066 30 1 4.9213 -6.7858 1.4197 31 1 4.9203 -6.7990 -1.3591 32 1 3.0097 -4.5821 -4.4611 33 1 1.8445 -3.2080 -2.7964 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004797644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:36 Heat of formation + Delta-G solvation = 74.902891 kcal Electronic energy + Delta-G solvation = -18949.075731 eV Core-core repulsion = 15991.463055 eV Total energy + Delta-G solvation = -2957.612676 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 376.997 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07662 -37.88933 -36.10437 -33.40072 -31.96640 -31.27140 -29.77378 -28.86771 -27.80406 -26.19985 -23.91488 -22.72083 -21.52398 -20.51380 -20.27890 -17.10222 -16.83489 -16.50083 -15.76190 -14.77296 -14.48580 -14.27520 -14.22112 -13.78159 -13.53723 -13.28638 -13.00061 -12.58808 -12.18437 -11.79471 -11.51615 -11.42372 -11.16492 -10.89541 -10.83306 -10.66029 -10.55639 -10.23291 -10.00153 -9.75432 -9.49039 -9.35061 -8.73596 -8.59028 -7.64206 -6.97360 -6.31992 -4.43227 1.11346 1.34848 1.36545 2.17886 2.27272 3.15367 3.22350 3.25996 3.47993 4.03885 4.22561 4.30421 4.83768 4.94670 4.99457 5.19277 5.30320 5.35576 5.54412 5.63036 5.68715 5.83671 5.97264 6.06796 6.27662 6.32904 6.40778 6.47258 6.60433 6.75232 6.86759 6.90525 7.00853 7.05194 7.23460 7.57673 7.79429 7.82525 7.92718 8.63834 9.24952 10.72769 Molecular weight = 377.00amu Principal moments of inertia in cm(-1) A = 0.011520 B = 0.003490 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.912260 B = 8021.977007 C = 9956.147033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.239 3.761 10 N -0.472 5.472 11 C 0.157 3.843 12 C -0.128 4.128 13 C -0.093 4.093 14 C -0.163 4.163 15 C -0.066 4.066 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.025 4.025 19 C -0.141 4.141 20 I -0.065 7.065 21 C -0.063 4.063 22 C -0.125 4.125 23 C 0.175 3.825 24 H 0.268 0.732 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.511 -14.813 -5.119 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.121 3.879 10 N -0.154 5.154 11 C 0.051 3.949 12 C -0.149 4.149 13 C -0.112 4.112 14 C -0.182 4.182 15 C -0.085 4.085 16 C -0.120 4.120 17 C -0.124 4.124 18 C -0.046 4.046 19 C -0.283 4.283 20 I 0.085 6.915 21 C -0.085 4.085 22 C -0.147 4.147 23 C 0.066 3.934 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.145 0.855 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.775 -15.205 -6.103 18.586 hybrid contribution -0.277 1.855 0.835 2.053 sum 8.498 -13.351 -5.268 16.680 Atomic orbital electron populations 1.69918 1.06063 1.27748 1.49012 1.24930 0.94922 0.99466 0.94265 0.86403 0.79830 0.82285 0.78520 1.20234 1.20816 1.19607 1.21352 0.93724 0.89815 1.53146 0.91780 1.19687 0.86869 0.81739 0.99562 1.44966 1.39195 1.29776 1.01468 1.18321 0.94917 0.93070 0.88615 1.20252 1.03311 1.02024 0.89274 1.20784 0.96497 0.95334 0.98611 1.20746 1.01923 1.00385 0.95170 1.20362 0.98187 0.98107 0.91839 1.18690 1.02320 0.99856 0.91159 1.18662 1.02237 0.99813 0.91673 1.20202 0.97044 0.97340 0.90057 1.23527 1.06764 1.03606 0.94409 1.96614 1.76503 1.67480 1.50921 1.20608 0.95061 0.93672 0.99113 1.20217 1.03385 1.01969 0.89131 1.18385 0.93939 0.92344 0.88739 0.92204 0.93530 0.93566 0.85497 0.85990 0.86332 0.86479 0.85907 0.85464 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.30 13.29 55.43 0.74 -23.57 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -14.28 9.39 -34.44 -0.32 -14.60 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.24 5.77 5.65 -5.20 -0.03 5.75 16 10 N -0.47 -10.25 2.81 -112.80 -0.32 -10.57 16 11 C 0.16 3.16 6.77 -83.82 -0.57 2.59 16 12 C -0.13 -2.31 9.86 -39.39 -0.39 -2.70 16 13 C -0.09 -1.37 10.01 -39.58 -0.40 -1.77 16 14 C -0.16 -2.25 10.03 -39.58 -0.40 -2.64 16 15 C -0.07 -1.00 10.09 -39.34 -0.40 -1.40 16 16 C -0.12 -2.11 6.35 -104.99 -0.67 -2.78 16 17 C -0.12 -2.14 6.35 -104.99 -0.67 -2.81 16 18 C -0.03 -0.39 9.79 -39.32 -0.38 -0.78 16 19 C -0.14 -2.08 6.20 -39.54 -0.25 -2.32 16 20 I -0.06 -0.77 40.26 -73.02 -2.94 -3.71 16 21 C -0.06 -0.96 9.72 -39.57 -0.38 -1.34 16 22 C -0.12 -2.23 9.85 -39.39 -0.39 -2.62 16 23 C 0.17 3.49 6.77 -83.80 -0.57 2.92 16 24 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.05 1.17 7.91 -51.93 -0.41 0.76 16 26 H 0.05 1.15 7.90 -51.93 -0.41 0.74 16 27 H 0.13 2.31 7.93 -52.48 -0.42 1.90 16 28 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 31 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.13 2.40 7.92 -52.49 -0.42 1.98 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -27.24 317.56 -11.97 -39.21 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -3.31 Total: 1.09 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -5.90 Total: -22.80 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.42 Total: -34.13 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 53 Polarization: -0.77 SS G_CDS: -2.94 Total: -3.71 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.24 -11.97 -39.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004797644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.113 kcal (2) G-P(sol) polarization free energy of solvation -27.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds