Wall clock time and date at job start Tue Mar 31 2020 05:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29778 * 126.21259 * 2 1 4 4 N 1.39446 * 111.42550 * 179.87664 * 3 2 1 5 5 C 1.40053 * 124.94348 * 180.18378 * 4 3 2 6 6 C 1.38868 * 120.06828 * 179.97438 * 5 4 3 7 7 C 1.38113 * 119.92952 * 179.75075 * 6 5 4 8 8 C 1.38286 * 120.06769 * 0.54619 * 7 6 5 9 9 C 1.38292 * 120.13948 * 359.70610 * 8 7 6 10 10 C 1.38108 * 120.06955 * 0.02562 * 9 8 7 11 11 C 1.34850 * 110.11211 * 0.40617 * 4 3 2 12 12 O 1.21880 * 127.00736 * 179.73980 * 11 4 3 13 13 C 1.47047 * 126.20358 * 180.31730 * 2 1 3 14 14 C 1.38467 * 127.55216 * 359.97152 * 13 2 1 15 15 C 1.46118 * 120.00093 * 350.18594 * 14 13 2 16 16 C 1.40427 * 120.11890 * 314.78218 * 15 14 13 17 17 C 1.36453 * 119.87040 * 179.78604 * 16 15 14 18 18 C 1.39402 * 120.12740 * 0.47287 * 17 16 15 19 19 N 1.38819 * 119.88078 * 179.76070 * 18 17 16 20 20 C 1.46507 * 120.00312 * 180.02562 * 19 18 17 21 21 C 1.46497 * 119.99943 * 0.02562 * 19 18 17 22 22 C 1.50703 * 109.47100 * 90.00193 * 21 19 18 23 23 H 1.07999 * 119.99860 * 0.02562 * 22 21 19 24 24 C 1.37875 * 120.00033 * 179.97438 * 22 21 19 25 25 N 1.31513 * 120.00185 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00015 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47038 * 60.00047 * 26 24 22 28 28 H 1.48494 * 109.47261 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47115 * 300.00377 * 26 24 22 30 30 C 1.39409 * 120.24224 * 359.78203 * 18 17 16 31 31 C 1.36453 * 120.12635 * 359.97438 * 30 18 17 32 32 H 1.08998 * 109.46595 * 268.09277 * 1 2 3 33 33 H 1.09005 * 109.47108 * 28.08593 * 1 2 3 34 34 H 1.08996 * 109.47527 * 148.09444 * 1 2 3 35 35 H 1.08004 * 120.04075 * 0.02562 * 6 5 4 36 36 H 1.07998 * 119.96674 * 180.25626 * 7 6 5 37 37 H 1.07996 * 119.93376 * 179.72705 * 8 7 6 38 38 H 1.08002 * 119.96368 * 179.97438 * 9 8 7 39 39 H 1.08003 * 120.03313 * 180.02562 * 10 9 8 40 40 H 1.08005 * 119.99706 * 170.18282 * 14 13 2 41 41 H 1.07997 * 120.06297 * 0.02792 * 16 15 14 42 42 H 1.07997 * 119.93770 * 180.23657 * 17 16 15 43 43 H 1.09001 * 109.46825 * 89.99480 * 20 19 18 44 44 H 1.08999 * 109.47221 * 209.99859 * 20 19 18 45 45 H 1.08997 * 109.46723 * 329.99625 * 20 19 18 46 46 H 1.09002 * 109.47298 * 210.00175 * 21 19 18 47 47 H 1.08994 * 109.47403 * 329.99762 * 21 19 18 48 48 H 0.96996 * 120.00218 * 179.97438 * 25 24 22 49 49 H 1.08004 * 119.93637 * 179.97438 * 30 18 17 50 50 H 1.07994 * 120.06342 * 179.97438 * 31 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2737 1.0471 0.0000 4 7 3.6220 0.6912 0.0028 5 6 4.6906 1.5965 0.0072 6 6 5.9983 1.1292 0.0102 7 6 7.0500 2.0245 0.0093 8 6 6.8018 3.3849 0.0168 9 6 5.5006 3.8533 0.0191 10 6 4.4447 2.9632 0.0144 11 6 3.7472 -0.6515 -0.0043 12 8 4.7844 -1.2916 -0.0086 13 6 2.3756 -1.1865 -0.0066 14 6 1.9882 -2.5159 -0.0134 15 6 0.5868 -2.8697 0.2010 16 6 -0.1450 -2.2569 1.2310 17 6 -1.4546 -2.5879 1.4239 18 6 -2.0635 -3.5395 0.6072 19 7 -3.3947 -3.8760 0.8112 20 6 -4.0371 -4.8762 -0.0452 21 6 -4.1573 -3.2309 1.8829 22 6 -4.8159 -1.9843 1.3506 23 1 -4.6803 -1.7012 0.3172 24 6 -5.5924 -1.2059 2.1825 25 7 -5.7580 -1.5510 3.4407 26 14 -6.4082 0.3397 1.5229 27 1 -7.3237 -0.0201 0.4104 28 1 -7.1813 0.9935 2.6091 29 1 -5.3675 1.2746 1.0247 30 6 -1.3402 -4.1549 -0.4134 31 6 -0.0314 -3.8279 -0.6185 32 1 -0.3632 -0.0342 1.0271 33 1 -0.3633 0.9067 -0.4838 34 1 -0.3634 -0.8723 -0.5431 35 1 6.1929 0.0668 0.0088 36 1 8.0672 1.6618 0.0075 37 1 7.6258 4.0830 0.0206 38 1 5.3100 4.9164 0.0254 39 1 3.4287 3.3297 0.0158 40 1 2.7220 -3.2913 -0.1772 41 1 0.3267 -1.5223 1.8667 42 1 -2.0195 -2.1145 2.2133 43 1 -3.9091 -5.8659 0.3932 44 1 -5.1002 -4.6517 -0.1316 45 1 -3.5798 -4.8550 -1.0344 46 1 -4.9209 -3.9171 2.2492 47 1 -3.4849 -2.9665 2.6989 48 1 -6.3039 -1.0032 4.0261 49 1 -1.8167 -4.8918 -1.0430 50 1 0.5281 -4.3055 -1.4092 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004863822.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:21 Heat of formation + Delta-G solvation = 117.146985 kcal Electronic energy + Delta-G solvation = -32633.593427 eV Core-core repulsion = 28400.227109 eV Total energy + Delta-G solvation = -4233.366318 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.56025 -39.58480 -38.86994 -37.41261 -36.49351 -34.25618 -32.96024 -32.07680 -31.34603 -31.03915 -30.26859 -28.79607 -28.12915 -27.61882 -25.91484 -24.47907 -23.12046 -22.68412 -22.12061 -21.75160 -20.41508 -19.98091 -19.29450 -17.87140 -16.97609 -16.68139 -16.38801 -16.05210 -15.76296 -15.50898 -15.16750 -14.84826 -14.55771 -14.40905 -14.22599 -14.07839 -13.90564 -13.58653 -13.51783 -13.31330 -13.12776 -13.02506 -13.00690 -12.82674 -12.34564 -12.19813 -11.88092 -11.78059 -11.68332 -11.54896 -11.45220 -11.26472 -11.16502 -11.02400 -10.87810 -10.65498 -10.38228 -10.14311 -10.03666 -9.60427 -9.48004 -9.08687 -8.80725 -8.70569 -8.66576 -7.94182 -6.74727 -6.23463 -4.37119 0.13950 1.07978 1.26418 1.80371 1.84180 2.26865 2.47989 3.01433 3.17276 3.23543 3.25211 3.75779 3.76733 3.84281 4.12423 4.25571 4.31915 4.75374 4.81343 4.86187 4.95251 5.03203 5.05415 5.06721 5.12034 5.29152 5.31540 5.45686 5.47730 5.56390 5.61433 5.66887 5.70926 5.77396 5.80820 5.86854 5.89971 5.96765 6.06156 6.11232 6.17368 6.22433 6.26717 6.38490 6.41400 6.53479 6.57996 6.65643 6.75989 6.87279 6.91645 7.07393 7.14580 7.59871 7.59987 7.83625 7.85174 7.92851 8.06926 8.69934 9.30912 10.77764 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.002127 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.635379 B =13163.841211 C =15129.741084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.163 3.837 3 N -0.266 5.266 4 N -0.412 5.412 5 C 0.182 3.818 6 C -0.156 4.156 7 C -0.095 4.095 8 C -0.146 4.146 9 C -0.099 4.099 10 C -0.135 4.135 11 C 0.531 3.469 12 O -0.508 6.508 13 C -0.290 4.290 14 C 0.144 3.856 15 C -0.220 4.220 16 C -0.017 4.017 17 C -0.204 4.204 18 C 0.275 3.725 19 N -0.592 5.592 20 C 0.088 3.912 21 C 0.241 3.759 22 C -0.538 4.538 23 H 0.061 0.939 24 C 0.065 3.935 25 N -0.891 5.891 26 Si 0.897 3.103 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.273 1.273 30 C -0.233 4.233 31 C -0.020 4.020 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.152 0.848 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.035 0.965 47 H 0.041 0.959 48 H 0.267 0.733 49 H 0.122 0.878 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.401 0.510 -7.267 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.022 4.022 3 N -0.074 5.074 4 N -0.219 5.219 5 C 0.089 3.911 6 C -0.176 4.176 7 C -0.114 4.114 8 C -0.165 4.165 9 C -0.117 4.117 10 C -0.156 4.156 11 C 0.324 3.676 12 O -0.385 6.385 13 C -0.297 4.297 14 C 0.120 3.880 15 C -0.223 4.223 16 C -0.037 4.037 17 C -0.227 4.227 18 C 0.162 3.838 19 N -0.291 5.291 20 C -0.056 4.056 21 C 0.122 3.878 22 C -0.577 4.577 23 H 0.079 0.921 24 C -0.138 4.138 25 N -0.529 5.529 26 Si 0.725 3.275 27 H -0.202 1.202 28 H -0.211 1.211 29 H -0.198 1.198 30 C -0.256 4.256 31 C -0.039 4.039 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.169 0.831 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.139 0.861 42 H 0.159 0.841 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.077 0.923 49 H 0.140 0.860 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.699 1.261 -7.030 17.247 hybrid contribution -0.542 0.186 -0.273 0.635 sum 15.157 1.448 -7.303 16.887 Atomic orbital electron populations 1.20950 0.84404 1.04773 1.04895 1.24171 0.96956 0.88596 0.92503 1.76089 0.86628 1.24452 1.20205 1.46483 1.03478 1.05417 1.66537 1.17619 0.84920 0.88741 0.99815 1.21501 0.90102 1.02594 1.03440 1.20982 0.98537 0.92908 0.98933 1.21141 0.96831 0.95616 1.02886 1.20990 0.92182 0.99410 0.99137 1.20893 1.00541 0.90742 1.03379 1.18941 0.89856 0.81908 0.76858 1.90766 1.33408 1.64089 1.50227 1.21600 0.93146 0.94566 1.20365 1.22858 0.94940 0.92996 0.77159 1.18421 0.93222 1.06393 1.04264 1.20930 0.93114 0.94593 0.95038 1.20621 0.95190 1.02654 1.04199 1.18288 0.84419 0.90177 0.90918 1.47279 1.07564 1.40071 1.34162 1.21663 0.99038 0.90911 0.93971 1.19486 0.91001 0.92685 0.84617 1.21421 1.30754 1.08214 0.97303 0.92083 1.24949 0.96097 0.98048 0.94726 1.69901 1.39121 1.39088 1.04830 0.86561 0.79603 0.82843 0.78539 1.20189 1.21124 1.19847 1.20327 0.95493 1.07265 1.02548 1.20625 0.94158 0.92809 0.96355 0.88279 0.90239 0.88198 0.83085 0.85537 0.85989 0.85564 0.84755 0.84374 0.86121 0.84102 0.93718 0.90780 0.92053 0.94699 0.94105 0.92337 0.86003 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 8.17 36.01 0.29 -0.84 16 2 C 0.16 2.27 7.00 -79.89 -0.56 1.72 16 3 N -0.27 -4.10 11.47 35.02 0.40 -3.70 16 4 N -0.41 -6.61 3.74 -10.79 -0.04 -6.65 16 5 C 0.18 2.71 6.67 -83.63 -0.56 2.16 16 6 C -0.16 -2.14 9.36 -39.39 -0.37 -2.51 16 7 C -0.09 -1.03 10.04 -39.61 -0.40 -1.43 16 8 C -0.15 -1.43 10.04 -39.54 -0.40 -1.83 16 9 C -0.10 -1.03 10.04 -39.61 -0.40 -1.43 16 10 C -0.14 -1.75 9.63 -39.40 -0.38 -2.13 16 11 C 0.53 8.60 8.05 -12.57 -0.10 8.50 16 12 O -0.51 -8.83 15.16 5.03 0.08 -8.76 16 13 C -0.29 -4.05 6.04 -102.59 -0.62 -4.67 16 14 C 0.14 1.68 9.86 -36.34 -0.36 1.32 16 15 C -0.22 -2.66 4.25 -105.09 -0.45 -3.10 16 16 C -0.02 -0.23 5.56 -39.40 -0.22 -0.45 16 17 C -0.20 -3.23 9.13 -39.79 -0.36 -3.59 16 18 C 0.28 4.39 6.56 -83.83 -0.55 3.84 16 19 N -0.59 -10.40 2.97 -180.96 -0.54 -10.93 16 20 C 0.09 1.24 10.17 59.85 0.61 1.85 16 21 C 0.24 5.24 4.89 -5.19 -0.03 5.21 16 22 C -0.54 -12.99 9.39 -34.44 -0.32 -13.32 16 23 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 24 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 25 N -0.89 -23.57 13.29 55.43 0.74 -22.83 16 26 Si 0.90 19.66 29.54 -169.99 -5.02 14.63 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 30 C -0.23 -3.05 9.13 -39.79 -0.36 -3.42 16 31 C -0.02 -0.23 9.75 -39.40 -0.38 -0.62 16 32 H 0.10 1.20 6.21 -51.93 -0.32 0.88 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.24 5.86 -51.93 -0.30 0.94 16 35 H 0.15 2.25 5.37 -52.48 -0.28 1.97 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 1.72 7.64 -52.48 -0.40 1.32 16 40 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.12 1.51 6.47 -52.49 -0.34 1.17 16 42 H 0.14 2.53 6.10 -52.49 -0.32 2.21 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.09 8.07 -51.93 -0.42 0.68 16 45 H 0.06 0.73 6.16 -51.93 -0.32 0.41 16 46 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 47 H 0.04 0.94 6.16 -51.93 -0.32 0.62 16 48 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 49 H 0.12 1.40 6.10 -52.48 -0.32 1.08 16 50 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 411.60 15.07 6.20 6.20 Total: -1.00 -28.79 411.60 -10.46 -39.25 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.27 Total: 5.99 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -6.01 Total: -13.20 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.56 Total: -44.12 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -28.79 -10.46 -39.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004863822.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.392 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds