Wall clock time and date at job start Tue Mar 31 2020 05:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38288 * 119.96328 * 2 1 4 4 C 1.38283 * 120.13892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.96181 * 179.97438 * 4 3 2 6 6 C 1.38113 * 120.07042 * 359.95711 * 4 3 2 7 7 C 1.38870 * 119.93217 * 0.02562 * 6 4 3 8 8 N 1.39924 * 120.07331 * 179.72386 * 7 6 4 9 9 C 1.46500 * 119.99954 * 67.91059 * 8 7 6 10 10 C 1.50704 * 109.46754 * 90.00095 * 9 8 7 11 11 H 1.07997 * 119.99897 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99988 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00238 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00079 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46883 * 89.99771 * 14 12 10 16 16 H 1.48499 * 109.47014 * 209.99918 * 14 12 10 17 17 H 1.48505 * 109.46832 * 330.00247 * 14 12 10 18 18 C 1.34776 * 120.00196 * 247.92051 * 8 7 6 19 19 O 1.21287 * 119.99792 * 4.73112 * 18 8 7 20 20 C 1.50698 * 120.00053 * 184.74321 * 18 8 7 21 21 O 1.42902 * 109.46840 * 179.97438 * 20 18 8 22 22 C 1.34939 * 116.99625 * 179.97438 * 21 20 18 23 23 O 1.21662 * 120.00306 * 0.02562 * 22 21 20 24 24 C 1.46175 * 119.99882 * 179.97438 * 22 21 20 25 25 C 1.34103 * 119.24243 * 0.02562 * 24 22 21 26 26 O 1.34951 * 121.68076 * 180.34242 * 25 24 22 27 27 C 1.43242 * 116.76484 * 342.80687 * 26 25 24 28 28 C 1.53554 * 108.09800 * 45.51607 * 27 26 25 29 29 O 1.36222 * 119.24187 * 179.73020 * 24 22 21 30 30 C 1.38110 * 119.96717 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47406 * 89.99410 * 1 2 3 32 32 H 1.09003 * 109.47219 * 210.00155 * 1 2 3 33 33 H 1.09008 * 109.47041 * 329.99102 * 1 2 3 34 34 H 1.07994 * 119.92893 * 0.02562 * 3 2 1 35 35 H 1.08993 * 109.47087 * 269.97748 * 5 4 3 36 36 H 1.09001 * 109.46715 * 29.98022 * 5 4 3 37 37 H 1.09001 * 109.46488 * 149.97622 * 5 4 3 38 38 H 1.08003 * 120.03363 * 179.97438 * 6 4 3 39 39 H 1.08994 * 109.47328 * 210.00230 * 9 8 7 40 40 H 1.09006 * 109.47029 * 330.00751 * 9 8 7 41 41 H 0.97000 * 120.00651 * 179.97438 * 13 12 10 42 42 H 1.09003 * 109.46524 * 299.98802 * 20 18 8 43 43 H 1.08989 * 109.47315 * 59.99459 * 20 18 8 44 44 H 1.08002 * 119.15943 * 0.31881 * 25 24 22 45 45 H 1.09001 * 109.73845 * 165.16716 * 27 26 25 46 46 H 1.08998 * 109.73902 * 285.86031 * 27 26 25 47 47 H 1.08995 * 109.75102 * 61.44422 * 28 27 26 48 48 H 1.08995 * 109.75023 * 182.18714 * 28 27 26 49 49 H 1.08005 * 120.03523 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1981 0.0000 4 6 3.5805 1.2023 -0.0005 5 6 4.3291 2.5102 -0.0011 6 6 4.2762 0.0092 -0.0002 7 6 3.5856 -1.1956 0.0002 8 7 4.2874 -2.4061 -0.0053 9 6 5.0724 -2.8030 1.1662 10 6 4.2048 -3.6005 2.1055 11 1 3.1722 -3.7929 1.8547 12 6 4.7298 -4.0855 3.2846 13 7 5.9874 -3.8517 3.5898 14 14 3.6545 -5.0747 4.4486 15 1 3.7474 -6.5162 4.1037 16 1 4.1167 -4.8690 5.8448 17 1 2.2447 -4.6255 4.3225 18 6 4.2413 -3.2069 -1.0884 19 8 3.6630 -2.8403 -2.0894 20 6 4.9082 -4.5579 -1.0554 21 8 4.7211 -5.2122 -2.3121 22 6 5.2613 -6.4411 -2.4493 23 8 5.8742 -6.9428 -1.5258 24 6 5.1092 -7.1700 -3.7071 25 6 4.4302 -6.6029 -4.7150 26 8 4.2541 -7.2342 -5.8946 27 6 5.1189 -8.3428 -6.1684 28 6 5.1829 -9.2199 -4.9097 29 8 5.6655 -8.4073 -3.8307 30 6 2.1968 -1.1965 0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5140 34 1 1.6559 2.1323 0.0004 35 1 4.5096 2.8251 -1.0289 36 1 3.7372 3.2678 0.5125 37 1 5.2820 2.3836 0.5128 38 1 5.3562 0.0132 -0.0010 39 1 5.9183 -3.4119 0.8475 40 1 5.4380 -1.9122 1.6773 41 1 6.3567 -4.1925 4.4195 42 1 5.9743 -4.4323 -0.8661 43 1 4.4670 -5.1617 -0.2626 44 1 4.0134 -5.6159 -4.5789 45 1 4.7215 -8.9228 -7.0013 46 1 6.1165 -7.9794 -6.4150 47 1 4.1886 -9.5993 -4.6741 48 1 5.8660 -10.0529 -5.0756 49 1 1.6569 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004871217.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:16 Heat of formation + Delta-G solvation = -143.756469 kcal Electronic energy + Delta-G solvation = -34243.174938 eV Core-core repulsion = 29523.060232 eV Total energy + Delta-G solvation = -4720.114706 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.161 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.32890 -40.36567 -39.73378 -38.30258 -37.34377 -36.11634 -35.25308 -33.25294 -32.81809 -32.54797 -30.88551 -29.52551 -27.92193 -27.38354 -26.78655 -26.39181 -25.63466 -23.11125 -22.91154 -21.74165 -20.39409 -19.98719 -18.90698 -18.65065 -18.16942 -17.05834 -16.94083 -16.48733 -16.35316 -16.21258 -15.87375 -15.59341 -15.35220 -15.11285 -15.07311 -14.53047 -14.45951 -14.10317 -13.97268 -13.74571 -13.52640 -13.08986 -13.04122 -12.82677 -12.63169 -12.49546 -12.37688 -12.34851 -12.21149 -11.80973 -11.67758 -11.33404 -11.28312 -11.23342 -11.00969 -10.99180 -10.84479 -10.76852 -10.43484 -10.34996 -10.24413 -9.90214 -9.34138 -8.63259 -8.58075 -8.47329 -8.18939 -7.74266 -6.24365 -4.32879 1.03204 1.68105 1.75379 2.03630 2.79401 2.99079 3.04895 3.22644 3.29725 3.31779 3.37227 3.91042 3.96522 4.07796 4.30513 4.50630 4.59641 4.67969 4.98276 4.98777 5.02788 5.09390 5.11285 5.14118 5.16078 5.43364 5.46783 5.50552 5.54325 5.66860 5.72395 5.73183 5.78124 5.80047 5.88473 6.00829 6.03293 6.19508 6.40827 6.46525 6.52421 6.61831 6.82368 6.87760 6.93514 7.03960 7.06289 7.19671 7.54239 7.69206 7.87467 7.92341 8.00823 8.63601 8.78227 9.35653 10.82783 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.007244 B = 0.002860 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3864.280852 B = 9788.970700 C =12293.689282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.079 4.079 3 C -0.132 4.132 4 C -0.079 4.079 5 C -0.109 4.109 6 C -0.126 4.126 7 C 0.183 3.817 8 N -0.555 5.555 9 C 0.235 3.765 10 C -0.545 4.545 11 H 0.063 0.937 12 C 0.070 3.930 13 N -0.887 5.887 14 Si 0.897 3.103 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.526 3.474 19 O -0.539 6.539 20 C 0.059 3.941 21 O -0.330 6.330 22 C 0.521 3.479 23 O -0.483 6.483 24 C -0.070 4.070 25 C 0.052 3.948 26 O -0.298 6.298 27 C 0.011 3.989 28 C 0.021 3.979 29 O -0.287 6.287 30 C -0.109 4.109 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.122 0.878 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.267 0.733 42 H 0.102 0.898 43 H 0.118 0.882 44 H 0.200 0.800 45 H 0.123 0.877 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.124 0.876 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.604 -0.242 -15.362 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.080 4.080 5 C -0.166 4.166 6 C -0.146 4.146 7 C 0.092 3.908 8 N -0.284 5.284 9 C 0.116 3.884 10 C -0.584 4.584 11 H 0.081 0.919 12 C -0.134 4.134 13 N -0.524 5.524 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.197 1.197 18 C 0.314 3.686 19 O -0.416 6.416 20 C -0.018 4.018 21 O -0.247 6.247 22 C 0.365 3.635 23 O -0.370 6.370 24 C -0.116 4.116 25 C -0.014 4.014 26 O -0.209 6.209 27 C -0.065 4.065 28 C -0.055 4.055 29 O -0.202 6.202 30 C -0.128 4.128 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.140 0.860 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.135 0.865 44 H 0.216 0.784 45 H 0.141 0.859 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.142 0.858 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.530 -0.294 -15.459 15.859 hybrid contribution -0.247 -0.925 1.080 1.443 sum -3.777 -1.219 -14.379 14.917 Atomic orbital electron populations 1.20740 0.91387 1.02502 1.01983 1.19676 0.95771 0.92683 0.99829 1.20755 0.93361 0.97117 1.03762 1.19637 0.93678 0.94666 1.00033 1.20736 0.99931 0.93961 1.01943 1.21029 0.99887 0.91057 1.02613 1.17424 0.90421 0.85233 0.97722 1.45776 1.48612 1.17186 1.16800 1.19688 0.90615 0.97015 0.81045 1.21391 0.97852 1.34727 1.04397 0.91857 1.24910 0.95091 0.95820 0.97607 1.69901 1.12892 1.44856 1.24781 0.86497 0.80663 0.80445 0.79980 1.20255 1.20922 1.19678 1.19841 0.80652 0.85171 0.82910 1.90673 1.44470 1.74633 1.31841 1.22475 1.03191 0.92357 0.83729 1.86020 1.70912 1.29173 1.38548 1.19707 0.77232 0.80072 0.86505 1.90964 1.37830 1.67573 1.40636 1.18978 1.10283 0.89015 0.93354 1.23727 0.97546 0.97398 0.82707 1.86139 1.56334 1.44256 1.34207 1.23789 0.95854 0.88069 0.98763 1.23705 1.02372 0.93403 0.86025 1.86441 1.60210 1.23143 1.50424 1.21069 0.93208 0.97811 1.00761 0.91436 0.91621 0.91803 0.86504 0.91498 0.91781 0.91579 0.86029 0.93949 0.93747 0.92295 0.87977 0.86467 0.78375 0.85932 0.89772 0.90241 0.85831 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 36.00 0.36 -1.00 16 2 C -0.08 -1.26 5.88 -104.65 -0.62 -1.88 16 3 C -0.13 -1.95 9.35 -39.55 -0.37 -2.32 16 4 C -0.08 -1.22 5.88 -104.65 -0.62 -1.84 16 5 C -0.11 -1.27 10.01 36.01 0.36 -0.91 16 6 C -0.13 -2.28 9.34 -39.39 -0.37 -2.64 16 7 C 0.18 3.70 4.76 -83.69 -0.40 3.30 16 8 N -0.55 -11.84 2.51 -114.74 -0.29 -12.13 16 9 C 0.23 5.51 4.88 -5.19 -0.03 5.49 16 10 C -0.55 -14.05 9.16 -34.44 -0.32 -14.37 16 11 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 12 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 13 N -0.89 -24.38 13.29 55.43 0.74 -23.65 16 14 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 C 0.53 11.02 7.60 -10.99 -0.08 10.94 16 19 O -0.54 -12.05 16.25 -14.36 -0.23 -12.28 16 20 C 0.06 1.14 4.52 36.00 0.16 1.31 16 21 O -0.33 -5.91 8.66 -47.91 -0.41 -6.33 16 22 C 0.52 9.18 7.84 33.92 0.27 9.44 16 23 O -0.48 -10.05 16.69 -24.95 -0.42 -10.47 16 24 C -0.07 -1.01 6.61 -37.85 -0.25 -1.26 16 25 C 0.05 0.63 10.62 29.28 0.31 0.94 16 26 O -0.30 -3.08 10.47 -30.66 -0.32 -3.40 16 27 C 0.01 0.07 7.29 37.44 0.27 0.35 16 28 C 0.02 0.17 7.32 37.44 0.27 0.44 16 29 O -0.29 -3.95 10.29 -45.82 -0.47 -4.42 16 30 C -0.11 -2.07 9.19 -39.39 -0.36 -2.43 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.06 0.67 8.09 -51.92 -0.42 0.25 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 37 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.12 2.09 8.06 -52.48 -0.42 1.66 16 39 H 0.04 1.01 6.47 -51.93 -0.34 0.67 16 40 H 0.04 1.10 7.86 -51.93 -0.41 0.69 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.10 1.92 7.24 -51.93 -0.38 1.54 16 43 H 0.12 2.39 7.90 -51.93 -0.41 1.98 16 44 H 0.20 2.28 7.33 -52.49 -0.38 1.89 16 45 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 LS Contribution 422.99 15.07 6.37 6.37 Total: -1.00 -33.16 422.99 -8.49 -41.65 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.94 Total: 3.62 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.49 Total: 5.30 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.45 Total: -35.78 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -1.86 Total: -36.88 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.16 -8.49 -41.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004871217.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.107 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds