Wall clock time and date at job start Tue Mar 31 2020 05:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00056 * 2 1 4 4 H 1.48510 * 109.47151 * 89.99502 * 3 2 1 5 5 H 1.48497 * 109.47263 * 209.99660 * 3 2 1 6 6 H 1.48499 * 109.47326 * 330.00016 * 3 2 1 7 7 C 1.37876 * 119.99777 * 180.27277 * 2 1 3 8 8 H 1.08003 * 119.99877 * 179.72738 * 7 2 1 9 9 C 1.50699 * 119.99963 * 359.72671 * 7 2 1 10 10 N 1.46503 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.34610 * 125.24907 * 124.71963 * 10 9 7 12 12 C 1.36801 * 108.03988 * 179.83912 * 11 10 9 13 13 C 1.47385 * 126.68744 * 180.12881 * 12 11 10 14 14 N 1.29828 * 119.99580 * 185.35854 * 13 12 11 15 15 N 1.40102 * 119.99999 * 179.97438 * 14 13 12 16 16 C 1.34774 * 120.00111 * 179.97438 * 15 14 13 17 17 O 1.21580 * 119.99956 * 0.02562 * 16 15 14 18 18 C 1.48074 * 119.99844 * 180.02562 * 16 15 14 19 19 C 1.39855 * 120.92814 * 359.72298 * 18 16 15 20 20 C 1.38128 * 118.99921 * 179.74895 * 19 18 16 21 21 N 1.31825 * 120.89764 * 0.54044 * 20 19 18 22 22 C 1.31834 * 122.05550 * 359.71347 * 21 20 19 23 23 C 1.38123 * 120.89762 * 0.02562 * 22 21 20 24 24 C 1.46489 * 106.61576 * 0.41606 * 12 11 10 25 25 C 1.48263 * 126.49594 * 179.71314 * 24 12 11 26 26 C 1.39398 * 120.12786 * 224.27428 * 25 24 12 27 27 C 1.37997 * 119.87517 * 179.74398 * 26 25 24 28 28 C 1.38327 * 120.12604 * 0.53366 * 27 26 25 29 29 C 1.38339 * 120.25522 * 359.74207 * 28 27 26 30 30 C 1.37999 * 120.12590 * 359.97438 * 29 28 27 31 31 N 1.31517 * 107.00751 * 359.74128 * 24 12 11 32 32 H 0.96999 * 120.00379 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47618 * 299.99809 * 9 7 2 34 34 H 1.08998 * 109.47035 * 60.00122 * 9 7 2 35 35 H 1.07995 * 125.97796 * 359.97438 * 11 10 9 36 36 H 1.07997 * 120.00387 * 5.35481 * 13 12 11 37 37 H 0.97001 * 119.99792 * 0.02562 * 15 14 13 38 38 H 1.08004 * 120.49634 * 359.97438 * 19 18 16 39 39 H 1.07994 * 119.54772 * 180.25070 * 20 19 18 40 40 H 1.07997 * 119.54807 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.49775 * 179.97438 * 23 22 21 42 42 H 1.08006 * 120.05771 * 0.02562 * 26 25 24 43 43 H 1.07998 * 119.93758 * 180.27813 * 27 26 25 44 44 H 1.07997 * 119.87410 * 179.76656 * 28 27 26 45 45 H 1.08003 * 119.93716 * 180.02562 * 29 28 27 46 46 H 1.07997 * 120.06540 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4002 5 1 3.5467 1.4401 -0.6999 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0101 9 6 1.2510 -2.4991 -0.0057 10 7 2.2029 -3.6127 -0.0116 11 6 2.2352 -4.6120 0.8897 12 6 3.2560 -5.4567 0.5493 13 6 3.6540 -6.6869 1.2567 14 7 4.7118 -7.3387 0.8803 15 7 5.0905 -8.5079 1.5530 16 6 6.1883 -9.1849 1.1619 17 8 6.8502 -8.7808 0.2256 18 6 6.5882 -10.4208 1.8726 19 6 5.8442 -10.8999 2.9557 20 6 6.2504 -12.0597 3.5864 21 7 7.3278 -12.7058 3.1869 22 6 8.0601 -12.2861 2.1742 23 6 7.7237 -11.1384 1.4833 24 6 3.8808 -4.8963 -0.6514 25 6 5.0370 -5.4598 -1.3887 26 6 6.0679 -4.6250 -1.8171 27 6 7.1442 -5.1559 -2.4983 28 6 7.1961 -6.5120 -2.7660 29 6 6.1732 -7.3445 -2.3483 30 6 5.0947 -6.8257 -1.6612 31 7 3.2219 -3.7981 -0.9510 32 1 -0.4851 -0.8400 -0.0004 33 1 0.6280 -2.5591 0.8867 34 1 0.6207 -2.5547 -0.8932 35 1 1.5701 -4.7278 1.7326 36 1 3.0658 -7.0460 2.0882 37 1 4.5622 -8.8304 2.2998 38 1 4.9633 -10.3729 3.2915 39 1 5.6802 -12.4398 4.4210 40 1 8.9349 -12.8474 1.8808 41 1 8.3285 -10.8002 0.6549 42 1 6.0265 -3.5654 -1.6122 43 1 7.9456 -4.5107 -2.8267 44 1 8.0385 -6.9226 -3.3027 45 1 6.2191 -8.4027 -2.5597 46 1 4.2970 -7.4766 -1.3352 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005050619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:57 Heat of formation + Delta-G solvation = 151.439418 kcal Electronic energy + Delta-G solvation = -31964.487477 eV Core-core repulsion = 27629.067847 eV Total energy + Delta-G solvation = -4335.419630 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.144 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.92260 -40.53277 -39.19979 -38.41596 -36.54985 -34.27275 -33.52395 -32.52792 -32.08037 -31.60909 -30.46770 -30.04404 -29.37701 -26.67864 -25.25088 -23.98257 -23.61261 -23.06662 -22.19241 -21.69143 -21.01993 -20.04104 -19.51373 -18.55761 -17.42455 -17.05049 -16.73704 -16.36412 -16.20595 -15.81748 -15.62556 -15.38611 -14.94856 -14.62789 -14.33353 -14.21827 -14.14858 -14.11914 -13.89281 -13.75845 -13.32930 -13.05491 -12.73831 -12.52668 -12.29058 -12.23178 -12.14440 -11.89888 -11.28165 -10.90553 -10.85471 -10.72227 -10.57404 -10.39042 -10.37094 -10.22614 -9.99878 -9.92142 -9.72628 -9.62395 -9.41757 -8.85844 -8.65235 -8.42045 -8.13892 -7.49256 -6.67713 -4.43035 0.21346 0.57426 1.35331 1.67592 1.87695 2.26209 2.57801 2.78472 3.16674 3.32002 3.35455 3.37115 3.50729 3.53839 3.90992 4.00270 4.23889 4.28309 4.33631 4.40913 4.54543 4.59157 4.79800 4.94424 4.99381 5.07589 5.23358 5.26679 5.29163 5.33915 5.35559 5.49321 5.52270 5.68409 5.78121 5.86829 6.00693 6.06422 6.09039 6.32415 6.38185 6.46726 6.56162 6.74485 6.88776 6.90899 6.97989 7.08597 7.37026 7.39007 7.39798 7.47758 7.55924 8.21504 8.23810 8.29883 8.50432 9.24885 10.70039 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.002031 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.385799 B =13782.442858 C =15256.568622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 1.078 2.922 4 H -0.285 1.285 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.610 4.610 8 H 0.065 0.935 9 C 0.244 3.756 10 N -0.317 5.317 11 C 0.098 3.902 12 C -0.236 4.236 13 C 0.176 3.824 14 N -0.247 5.247 15 N -0.582 5.582 16 C 0.569 3.431 17 O -0.481 6.481 18 C -0.079 4.079 19 C -0.146 4.146 20 C 0.097 3.903 21 N -0.471 5.471 22 C 0.098 3.902 23 C -0.113 4.113 24 C 0.124 3.876 25 C -0.003 4.003 26 C -0.096 4.096 27 C -0.131 4.131 28 C -0.117 4.117 29 C -0.105 4.105 30 C -0.048 4.048 31 N -0.256 5.256 32 H 0.267 0.733 33 H 0.048 0.952 34 H 0.040 0.960 35 H 0.177 0.823 36 H 0.114 0.886 37 H 0.377 0.623 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.151 0.849 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.227 -23.296 5.716 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.180 4.180 3 Si 0.905 3.095 4 H -0.212 1.212 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.648 4.648 8 H 0.084 0.916 9 C 0.126 3.874 10 N -0.093 5.093 11 C -0.057 4.057 12 C -0.252 4.252 13 C -0.033 4.033 14 N -0.052 5.052 15 N -0.323 5.323 16 C 0.355 3.645 17 O -0.352 6.352 18 C -0.091 4.091 19 C -0.166 4.166 20 C -0.059 4.059 21 N -0.181 5.181 22 C -0.059 4.059 23 C -0.134 4.134 24 C -0.045 4.045 25 C -0.005 4.005 26 C -0.115 4.115 27 C -0.149 4.149 28 C -0.135 4.135 29 C -0.123 4.123 30 C -0.067 4.067 31 N -0.076 5.076 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.194 0.806 36 H 0.131 0.869 37 H 0.215 0.785 38 H 0.155 0.845 39 H 0.180 0.820 40 H 0.182 0.818 41 H 0.169 0.831 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.301 -21.105 4.078 24.285 hybrid contribution -1.128 -1.792 1.520 2.607 sum 10.173 -22.897 5.598 25.673 Atomic orbital electron populations 1.70838 1.06786 1.30452 1.45687 1.25925 0.96268 1.02842 0.92949 0.83395 0.74813 0.74284 0.77025 1.21161 1.21093 1.20637 1.22092 0.95468 0.90208 1.57079 0.91641 1.19896 0.86371 0.82784 0.98366 1.49041 1.23616 1.18971 1.17669 1.22498 0.98267 0.89337 0.95566 1.19011 1.04282 0.99670 1.02233 1.23559 0.91949 0.92397 0.95440 1.75473 1.15946 0.95925 1.17873 1.46822 1.28022 1.23881 1.33597 1.17810 0.80006 0.82688 0.84005 1.90861 1.51020 1.66765 1.26591 1.20347 0.96773 0.95534 0.96472 1.22381 1.00468 0.98000 0.95774 1.22776 0.93078 0.91466 0.98604 1.67592 1.05282 1.32091 1.13094 1.22864 0.98484 0.93603 0.90933 1.22357 0.95686 0.94847 1.00471 1.21958 0.95738 0.92606 0.94156 1.17606 0.91700 0.93008 0.98151 1.21161 0.93330 0.99514 0.97485 1.20911 0.98263 0.95319 1.00407 1.21050 0.98430 0.93711 1.00316 1.20768 0.94029 0.98880 0.98613 1.20788 0.97818 0.93166 0.94962 1.77608 1.00739 1.16223 1.13040 0.92255 0.93474 0.94272 0.80591 0.86894 0.78520 0.84463 0.82008 0.81787 0.83102 0.86149 0.86526 0.86907 0.86938 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.31 13.65 55.43 0.76 -24.55 16 2 C 0.03 0.68 5.46 -17.82 -0.10 0.58 16 3 Si 1.08 24.34 29.90 -169.99 -5.08 19.25 16 4 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.61 -16.36 9.21 -34.44 -0.32 -16.68 16 8 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 9 C 0.24 5.69 5.53 -5.19 -0.03 5.66 16 10 N -0.32 -6.68 3.64 -62.24 -0.23 -6.90 16 11 C 0.10 1.61 11.34 -16.85 -0.19 1.42 16 12 C -0.24 -3.86 6.23 -103.37 -0.64 -4.51 16 13 C 0.18 2.23 10.88 -14.68 -0.16 2.07 16 14 N -0.25 -3.43 7.07 32.15 0.23 -3.20 16 15 N -0.58 -6.23 6.22 30.59 0.19 -6.04 16 16 C 0.57 6.68 7.91 -12.23 -0.10 6.58 16 17 O -0.48 -7.32 15.80 5.30 0.08 -7.24 16 18 C -0.08 -0.69 5.91 -104.65 -0.62 -1.31 16 19 C -0.15 -0.91 9.62 -39.02 -0.38 -1.29 16 20 C 0.10 0.62 11.17 -17.59 -0.20 0.42 16 21 N -0.47 -3.84 10.34 -13.31 -0.14 -3.98 16 22 C 0.10 0.69 11.17 -17.59 -0.20 0.50 16 23 C -0.11 -0.91 9.68 -39.02 -0.38 -1.28 16 24 C 0.12 2.41 6.86 -80.56 -0.55 1.86 16 25 C 0.00 -0.05 5.48 -104.91 -0.57 -0.62 16 26 C -0.10 -1.67 9.78 -39.24 -0.38 -2.05 16 27 C -0.13 -1.97 10.03 -39.64 -0.40 -2.37 16 28 C -0.12 -1.66 10.04 -39.51 -0.40 -2.06 16 29 C -0.10 -1.57 9.05 -39.63 -0.36 -1.93 16 30 C -0.05 -0.78 7.53 -39.24 -0.30 -1.08 16 31 N -0.26 -5.71 12.33 34.57 0.43 -5.28 16 32 H 0.27 7.27 7.22 -40.82 -0.29 6.97 16 33 H 0.05 1.04 7.92 -51.93 -0.41 0.63 16 34 H 0.04 0.96 8.00 -51.93 -0.42 0.55 16 35 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.11 0.94 8.02 -52.49 -0.42 0.52 16 37 H 0.38 2.59 6.79 -182.60 -1.24 1.35 16 38 H 0.14 0.47 6.54 -52.48 -0.34 0.13 16 39 H 0.16 0.57 8.06 -52.49 -0.42 0.14 16 40 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.15 1.15 7.74 -52.49 -0.41 0.74 16 42 H 0.12 2.16 8.06 -52.48 -0.42 1.73 16 43 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 45 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 46 H 0.11 1.84 6.91 -52.49 -0.36 1.48 16 LS Contribution 406.53 15.07 6.13 6.13 Total: -1.00 -34.81 406.53 -9.96 -44.77 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.06 Total: 3.12 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -6.26 Total: -16.08 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 1.24 Total: -49.95 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.08 Total: -7.24 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.25 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.81 -9.96 -44.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005050619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.206 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds