Wall clock time and date at job start Tue Mar 31 2020 06:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38356 * 119.87492 * 2 1 4 4 C 1.37984 * 120.12857 * 179.69700 * 3 2 1 5 5 C 1.39407 * 119.86776 * 0.57526 * 4 3 2 6 6 C 1.48283 * 120.12337 * 179.72260 * 5 4 3 7 7 N 1.31354 * 126.52052 * 145.03912 * 6 5 4 8 8 N 1.39760 * 109.10451 * 180.11321 * 7 6 5 9 9 C 1.46505 * 125.15410 * 179.86850 * 8 7 6 10 10 C 1.50702 * 109.46918 * 304.69761 * 9 8 7 11 11 H 1.07994 * 119.99914 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99703 * 179.97438 * 10 9 8 13 13 N 1.31503 * 119.99766 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99907 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47383 * 89.99945 * 14 12 10 16 16 H 1.48499 * 109.46809 * 209.99885 * 14 12 10 17 17 H 1.48503 * 109.47082 * 329.99731 * 14 12 10 18 18 C 1.34131 * 109.69432 * 359.60531 * 8 7 6 19 19 C 1.38048 * 107.87511 * 0.22895 * 18 8 7 20 20 C 1.47132 * 126.81828 * 179.97438 * 19 18 8 21 21 O 1.21553 * 120.00034 * 180.02562 * 20 19 18 22 22 O 1.34791 * 120.00160 * 0.02562 * 20 19 18 23 23 C 1.35916 * 117.00266 * 175.09746 * 22 20 19 24 24 C 1.38737 * 120.05351 * 256.79425 * 23 22 20 25 25 C 1.38143 * 119.94069 * 179.74327 * 24 23 22 26 26 C 1.38263 * 120.05797 * 0.50079 * 25 24 23 27 27 C 1.38268 * 120.11232 * 359.77674 * 26 25 24 28 28 C 1.38142 * 120.05210 * 359.96965 * 27 26 25 29 29 C 1.39363 * 119.75200 * 359.44970 * 5 4 3 30 30 C 1.38024 * 119.87290 * 0.27129 * 29 5 4 31 31 C 1.50700 * 119.93831 * 179.97438 * 30 29 5 32 32 H 1.08996 * 109.47357 * 269.98000 * 1 2 3 33 33 H 1.09008 * 109.46978 * 29.98115 * 1 2 3 34 34 H 1.09000 * 109.46843 * 149.97494 * 1 2 3 35 35 H 1.07999 * 119.93279 * 359.97438 * 3 2 1 36 36 H 1.08000 * 120.06902 * 180.30120 * 4 3 2 37 37 H 1.08997 * 109.46635 * 64.69428 * 9 8 7 38 38 H 1.08998 * 109.47392 * 184.69700 * 9 8 7 39 39 H 0.97001 * 120.00571 * 180.02562 * 13 12 10 40 40 H 1.07998 * 126.05806 * 180.22781 * 18 8 7 41 41 H 1.08001 * 120.02886 * 359.97438 * 24 23 22 42 42 H 1.08002 * 119.97212 * 180.27827 * 25 24 23 43 43 H 1.07999 * 119.94624 * 179.74579 * 26 25 24 44 44 H 1.08004 * 119.97502 * 179.97438 * 27 26 25 45 45 H 1.08011 * 120.02174 * 179.97438 * 28 27 26 46 46 H 1.08002 * 120.06302 * 180.25755 * 29 5 4 47 47 H 1.09002 * 109.46882 * 90.00472 * 31 30 29 48 48 H 1.09000 * 109.47396 * 210.00014 * 31 30 29 49 49 H 1.09000 * 109.47080 * 330.00449 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1997 0.0000 4 6 3.5759 1.2058 0.0063 5 6 4.2756 0.0000 0.0006 6 6 5.7584 0.0000 0.0011 7 7 6.5399 -0.8681 0.6019 8 7 7.8735 -0.5226 0.3666 9 6 9.0367 -1.2529 0.8765 10 6 8.9408 -1.3661 2.3762 11 1 8.0980 -0.9367 2.8973 12 6 9.9291 -2.0180 3.0829 13 7 9.8457 -2.1164 4.3916 14 14 11.3872 -2.7601 2.1814 15 1 12.4717 -1.7508 2.0788 16 1 11.8817 -3.9435 2.9299 17 1 10.9675 -3.1760 0.8190 18 6 7.9271 0.5756 -0.4017 19 6 6.6313 0.9656 -0.6745 20 6 6.2096 2.1209 -1.4820 21 8 5.0269 2.3511 -1.6425 22 8 7.1348 2.9241 -2.0440 23 6 6.6809 3.9114 -2.8603 24 6 6.7792 3.7744 -4.2374 25 6 6.3123 4.7770 -5.0651 26 6 5.7569 5.9209 -4.5221 27 6 5.6630 6.0623 -3.1499 28 6 6.1237 5.0603 -2.3180 29 6 3.5761 -1.2054 0.0001 30 6 2.1959 -1.1993 -0.0004 31 6 1.4381 -2.5019 -0.0015 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3633 -0.8898 -0.5142 35 1 1.6530 2.1332 -0.0004 36 1 4.1129 2.1429 0.0112 37 1 9.0604 -2.2503 0.4376 38 1 9.9476 -0.7169 0.6101 39 1 10.5411 -2.5746 4.8889 40 1 8.8249 1.0674 -0.7458 41 1 7.2170 2.8831 -4.6620 42 1 6.3845 4.6689 -6.1373 43 1 5.3962 6.7054 -5.1708 44 1 5.2292 6.9569 -2.7281 45 1 6.0505 5.1715 -1.2461 46 1 4.1131 -2.1425 -0.0002 47 1 1.2550 -2.8166 1.0259 48 1 0.4863 -2.3681 -0.5155 49 1 2.0249 -3.2632 -0.5156 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005068664.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:01 Heat of formation + Delta-G solvation = 50.209737 kcal Electronic energy + Delta-G solvation = -32969.889284 eV Core-core repulsion = 28635.901687 eV Total energy + Delta-G solvation = -4333.987597 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.24082 -40.48102 -39.16577 -38.51761 -36.49335 -34.28290 -33.21534 -32.15031 -31.56354 -31.18439 -30.82784 -29.79936 -28.30485 -27.22077 -26.20751 -24.33285 -23.04653 -22.91327 -22.11335 -21.90135 -20.86090 -20.27426 -18.95796 -18.03508 -17.46065 -17.17150 -16.57774 -16.38822 -15.87560 -15.50533 -15.37529 -14.89865 -14.75014 -14.57965 -14.28444 -14.20007 -13.91446 -13.66904 -13.64394 -13.28032 -12.97481 -12.77129 -12.71148 -12.68337 -12.58796 -12.50009 -12.22963 -11.93865 -11.86443 -11.77472 -11.67570 -11.22707 -11.01197 -10.92198 -10.83387 -10.68483 -10.39598 -10.30237 -10.16745 -9.80977 -9.25679 -9.18098 -8.88791 -8.87466 -8.49011 -8.36397 -7.84520 -6.34884 -4.39794 0.93689 1.15642 1.22119 1.69892 1.70780 2.61075 2.72518 3.04325 3.09092 3.12627 3.20509 3.36430 3.67102 4.07597 4.11921 4.56655 4.69981 4.70275 4.79060 4.86927 4.92962 4.96318 5.04070 5.11160 5.16382 5.19285 5.22839 5.31789 5.48344 5.49885 5.54828 5.67306 5.72016 5.75162 5.76524 5.85872 5.87858 5.93020 5.96964 6.12774 6.13869 6.21055 6.25889 6.27020 6.33621 6.41403 6.47648 6.55516 6.77462 6.84436 6.88293 6.91491 7.12825 7.25038 7.30391 8.01406 8.12371 8.19166 8.73109 9.17735 10.77393 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.005607 B = 0.003275 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4992.703262 B = 8548.386696 C =12788.314788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.082 4.082 3 C -0.127 4.127 4 C -0.060 4.060 5 C -0.018 4.018 6 C 0.153 3.847 7 N -0.251 5.251 8 N -0.308 5.308 9 C 0.222 3.778 10 C -0.542 4.542 11 H 0.088 0.912 12 C 0.080 3.920 13 N -0.881 5.881 14 Si 0.872 3.128 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.264 1.264 18 C 0.130 3.870 19 C -0.303 4.303 20 C 0.546 3.454 21 O -0.497 6.497 22 O -0.299 6.299 23 C 0.096 3.904 24 C -0.121 4.121 25 C -0.108 4.108 26 C -0.123 4.123 27 C -0.107 4.107 28 C -0.119 4.119 29 C -0.082 4.082 30 C -0.102 4.102 31 C -0.113 4.113 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.137 0.863 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.270 0.730 40 H 0.188 0.812 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.326 10.743 -16.319 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.145 4.145 4 C -0.079 4.079 5 C -0.020 4.020 6 C -0.015 4.015 7 N -0.070 5.070 8 N -0.082 5.082 9 C 0.104 3.896 10 C -0.580 4.580 11 H 0.106 0.894 12 C -0.125 4.125 13 N -0.518 5.518 14 Si 0.698 3.302 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.188 1.188 18 C -0.025 4.025 19 C -0.317 4.317 20 C 0.394 3.606 21 O -0.384 6.384 22 O -0.215 6.215 23 C 0.055 3.945 24 C -0.139 4.139 25 C -0.126 4.126 26 C -0.141 4.141 27 C -0.125 4.125 28 C -0.138 4.138 29 C -0.101 4.101 30 C -0.102 4.102 31 C -0.169 4.169 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.155 0.845 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.205 0.795 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.349 9.553 -15.356 21.351 hybrid contribution 1.151 0.397 -0.733 1.421 sum -10.199 9.950 -16.089 21.491 Atomic orbital electron populations 1.20845 0.91677 1.02515 1.02114 1.19789 0.95675 0.92750 1.00027 1.20838 0.93880 0.97125 1.02675 1.21422 0.93732 0.97830 0.94961 1.17640 0.87241 0.93857 1.03305 1.21772 0.92833 0.91849 0.95006 1.77588 0.86866 1.21823 1.20739 1.48896 1.06340 1.19391 1.33612 1.20313 0.79117 0.92394 0.97745 1.21009 1.10455 1.38848 0.87694 0.89414 1.24804 0.97759 0.95060 0.94831 1.69854 1.34330 1.41569 1.06019 0.86928 0.83105 0.79848 0.80363 1.19547 1.20340 1.18835 1.23143 0.98602 0.88926 0.91780 1.19961 0.92447 1.02508 1.16742 1.20323 0.83522 0.80201 0.76556 1.90826 1.17302 1.71375 1.58934 1.84667 1.39164 1.40371 1.57298 1.18514 0.99163 0.87866 0.88982 1.21213 1.00629 1.00315 0.91782 1.21010 0.98342 0.93525 0.99744 1.21210 0.99695 0.97949 0.95227 1.21027 0.99324 0.98672 0.93446 1.21373 0.98007 0.93562 1.00829 1.21066 0.93237 0.97418 0.98415 1.19546 0.93255 0.94839 1.02555 1.20806 0.99712 0.94163 1.02224 0.91313 0.91849 0.91346 0.86224 0.84528 0.93180 0.92816 0.91942 0.79519 0.85188 0.85356 0.85688 0.85418 0.85383 0.85646 0.91309 0.91465 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.60 36.00 0.35 -0.78 16 2 C -0.08 -1.09 5.88 -104.55 -0.62 -1.71 16 3 C -0.13 -1.83 9.68 -39.63 -0.38 -2.21 16 4 C -0.06 -1.01 7.77 -39.24 -0.31 -1.31 16 5 C -0.02 -0.33 5.73 -104.91 -0.60 -0.94 16 6 C 0.15 3.03 6.94 -80.55 -0.56 2.47 16 7 N -0.25 -5.51 12.27 34.58 0.42 -5.08 16 8 N -0.31 -6.39 3.62 -62.02 -0.22 -6.61 16 9 C 0.22 4.85 5.28 -5.19 -0.03 4.83 16 10 C -0.54 -14.54 9.77 -34.44 -0.34 -14.87 16 11 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 12 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 13 N -0.88 -25.61 13.96 55.43 0.77 -24.84 16 14 Si 0.87 19.16 27.47 -169.99 -4.67 14.49 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 18 C 0.13 2.25 11.23 -16.62 -0.19 2.06 16 19 C -0.30 -5.45 6.26 -102.97 -0.65 -6.09 16 20 C 0.55 9.11 7.69 34.34 0.26 9.37 16 21 O -0.50 -8.78 11.99 -19.31 -0.23 -9.01 16 22 O -0.30 -4.46 9.87 -24.98 -0.25 -4.71 16 23 C 0.10 1.29 5.14 -39.22 -0.20 1.09 16 24 C -0.12 -1.39 9.99 -39.43 -0.39 -1.78 16 25 C -0.11 -1.01 10.04 -39.61 -0.40 -1.40 16 26 C -0.12 -1.08 10.04 -39.56 -0.40 -1.48 16 27 C -0.11 -1.03 10.04 -39.61 -0.40 -1.43 16 28 C -0.12 -1.44 9.58 -39.43 -0.38 -1.82 16 29 C -0.08 -1.36 9.41 -39.24 -0.37 -1.73 16 30 C -0.10 -1.44 5.87 -104.67 -0.61 -2.06 16 31 C -0.11 -1.23 9.60 36.01 0.35 -0.88 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.55 8.08 -51.92 -0.42 0.13 16 34 H 0.07 0.58 5.93 -51.93 -0.31 0.28 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.14 2.35 5.67 -52.49 -0.30 2.05 16 37 H 0.05 1.08 7.20 -51.93 -0.37 0.71 16 38 H 0.05 1.04 7.47 -51.93 -0.39 0.65 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.19 2.46 8.06 -52.49 -0.42 2.03 16 41 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 46 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.61 5.93 -51.93 -0.31 0.30 16 49 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 LS Contribution 416.43 15.07 6.28 6.28 Total: -1.00 -32.08 416.43 -10.18 -42.26 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.33 Total: 5.82 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -5.95 Total: -18.61 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.97 Total: -36.53 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.48 Total: -13.71 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.67 Total: 14.49 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.08 -10.18 -42.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005068664.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.472 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds