Wall clock time and date at job start Tue Mar 31 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38356 * 119.87492 * 2 1 4 4 C 1.37984 * 120.12857 * 179.69700 * 3 2 1 5 5 C 1.39407 * 119.86776 * 0.57526 * 4 3 2 6 6 C 1.48283 * 120.12337 * 179.72260 * 5 4 3 7 7 N 1.31354 * 126.52052 * 145.03912 * 6 5 4 8 8 N 1.39760 * 109.10451 * 180.11321 * 7 6 5 9 9 C 1.46505 * 125.15410 * 179.86850 * 8 7 6 10 10 C 1.50702 * 109.46918 * 304.69761 * 9 8 7 11 11 H 1.07994 * 119.99914 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99703 * 179.97438 * 10 9 8 13 13 N 1.31503 * 119.99766 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99907 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47383 * 89.99945 * 14 12 10 16 16 H 1.48499 * 109.46809 * 209.99885 * 14 12 10 17 17 H 1.48503 * 109.47082 * 329.99731 * 14 12 10 18 18 C 1.34131 * 109.69432 * 359.60531 * 8 7 6 19 19 C 1.38048 * 107.87511 * 0.22895 * 18 8 7 20 20 C 1.47132 * 126.81828 * 179.97438 * 19 18 8 21 21 O 1.21553 * 120.00034 * 180.02562 * 20 19 18 22 22 O 1.34791 * 120.00160 * 0.02562 * 20 19 18 23 23 C 1.35916 * 117.00266 * 175.09746 * 22 20 19 24 24 C 1.38737 * 120.05351 * 256.79425 * 23 22 20 25 25 C 1.38143 * 119.94069 * 179.74327 * 24 23 22 26 26 C 1.38263 * 120.05797 * 0.50079 * 25 24 23 27 27 C 1.38268 * 120.11232 * 359.77674 * 26 25 24 28 28 C 1.38142 * 120.05210 * 359.96965 * 27 26 25 29 29 C 1.39363 * 119.75200 * 359.44970 * 5 4 3 30 30 C 1.38024 * 119.87290 * 0.27129 * 29 5 4 31 31 C 1.50700 * 119.93831 * 179.97438 * 30 29 5 32 32 H 1.08996 * 109.47357 * 269.98000 * 1 2 3 33 33 H 1.09008 * 109.46978 * 29.98115 * 1 2 3 34 34 H 1.09000 * 109.46843 * 149.97494 * 1 2 3 35 35 H 1.07999 * 119.93279 * 359.97438 * 3 2 1 36 36 H 1.08000 * 120.06902 * 180.30120 * 4 3 2 37 37 H 1.08997 * 109.46635 * 64.69428 * 9 8 7 38 38 H 1.08998 * 109.47392 * 184.69700 * 9 8 7 39 39 H 0.97001 * 120.00571 * 180.02562 * 13 12 10 40 40 H 1.07998 * 126.05806 * 180.22781 * 18 8 7 41 41 H 1.08001 * 120.02886 * 359.97438 * 24 23 22 42 42 H 1.08002 * 119.97212 * 180.27827 * 25 24 23 43 43 H 1.07999 * 119.94624 * 179.74579 * 26 25 24 44 44 H 1.08004 * 119.97502 * 179.97438 * 27 26 25 45 45 H 1.08011 * 120.02174 * 179.97438 * 28 27 26 46 46 H 1.08002 * 120.06302 * 180.25755 * 29 5 4 47 47 H 1.09002 * 109.46882 * 90.00472 * 31 30 29 48 48 H 1.09000 * 109.47396 * 210.00014 * 31 30 29 49 49 H 1.09000 * 109.47080 * 330.00449 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1997 0.0000 4 6 3.5759 1.2058 0.0063 5 6 4.2756 0.0000 0.0006 6 6 5.7584 0.0000 0.0011 7 7 6.5399 -0.8681 0.6019 8 7 7.8735 -0.5226 0.3666 9 6 9.0367 -1.2529 0.8765 10 6 8.9408 -1.3661 2.3762 11 1 8.0980 -0.9367 2.8973 12 6 9.9291 -2.0180 3.0829 13 7 9.8457 -2.1164 4.3916 14 14 11.3872 -2.7601 2.1814 15 1 12.4717 -1.7508 2.0788 16 1 11.8817 -3.9435 2.9299 17 1 10.9675 -3.1760 0.8190 18 6 7.9271 0.5756 -0.4017 19 6 6.6313 0.9656 -0.6745 20 6 6.2096 2.1209 -1.4820 21 8 5.0269 2.3511 -1.6425 22 8 7.1348 2.9241 -2.0440 23 6 6.6809 3.9114 -2.8603 24 6 6.7792 3.7744 -4.2374 25 6 6.3123 4.7770 -5.0651 26 6 5.7569 5.9209 -4.5221 27 6 5.6630 6.0623 -3.1499 28 6 6.1237 5.0603 -2.3180 29 6 3.5761 -1.2054 0.0001 30 6 2.1959 -1.1993 -0.0004 31 6 1.4381 -2.5019 -0.0015 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3633 -0.8898 -0.5142 35 1 1.6530 2.1332 -0.0004 36 1 4.1129 2.1429 0.0112 37 1 9.0604 -2.2503 0.4376 38 1 9.9476 -0.7169 0.6101 39 1 10.5411 -2.5746 4.8889 40 1 8.8249 1.0674 -0.7458 41 1 7.2170 2.8831 -4.6620 42 1 6.3845 4.6689 -6.1373 43 1 5.3962 6.7054 -5.1708 44 1 5.2292 6.9569 -2.7281 45 1 6.0505 5.1715 -1.2461 46 1 4.1131 -2.1425 -0.0002 47 1 1.2550 -2.8166 1.0259 48 1 0.4863 -2.3681 -0.5155 49 1 2.0249 -3.2632 -0.5156 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005068664.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:00 Heat of formation + Delta-G solvation = 34.829715 kcal Electronic energy + Delta-G solvation = -32970.556212 eV Core-core repulsion = 28635.901687 eV Total energy + Delta-G solvation = -4334.654525 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.51829 -41.76815 -40.34673 -39.46630 -37.66108 -35.87851 -34.78061 -33.48631 -32.96456 -32.05369 -31.96962 -30.89378 -29.85122 -28.35275 -27.37004 -25.68390 -24.54308 -23.72826 -23.26533 -23.09837 -22.15302 -21.55452 -20.30580 -19.21409 -19.07422 -18.82599 -17.55677 -17.46515 -17.04706 -16.88305 -16.60780 -16.29513 -16.13339 -15.71005 -15.49449 -15.26477 -15.14059 -14.79620 -14.69251 -14.41657 -14.39163 -14.17165 -14.08022 -13.68890 -13.56371 -13.52184 -13.45773 -13.16985 -12.91792 -12.74584 -12.69487 -12.58904 -12.53666 -12.21241 -12.09427 -11.96089 -11.84537 -11.69892 -11.59569 -11.40526 -10.91658 -10.75361 -9.97598 -9.89386 -9.73717 -9.62259 -9.14514 -8.41426 -6.53810 -0.06370 0.06036 0.35202 0.36729 0.49756 1.18522 1.32787 1.36152 1.43187 1.49965 1.83622 2.03048 2.25771 2.81625 2.83110 2.91203 3.27570 3.44834 3.85890 3.91483 3.93151 3.96045 4.01671 4.10727 4.13682 4.21456 4.25476 4.33736 4.42993 4.45273 4.50209 4.53403 4.61406 4.73086 4.75734 4.82876 4.86971 4.89673 4.99966 5.01841 5.03863 5.07324 5.19687 5.26074 5.30654 5.38473 5.39474 5.45798 5.50208 5.58179 5.64863 5.71522 5.73052 5.96449 6.09894 6.16749 6.49186 6.60591 6.86010 7.08959 8.75660 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.005607 B = 0.003275 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4992.703262 B = 8548.386696 C =12788.314788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 C -0.130 4.130 4 C -0.073 4.073 5 C -0.050 4.050 6 C 0.150 3.850 7 N -0.303 5.303 8 N -0.329 5.329 9 C 0.229 3.771 10 C -0.553 4.553 11 H 0.026 0.974 12 C 0.017 3.983 13 N -0.940 5.940 14 Si 0.954 3.046 15 H -0.251 1.251 16 H -0.282 1.282 17 H -0.236 1.236 18 C 0.144 3.856 19 C -0.314 4.314 20 C 0.550 3.450 21 O -0.509 6.509 22 O -0.296 6.296 23 C 0.057 3.943 24 C -0.133 4.133 25 C -0.107 4.107 26 C -0.115 4.115 27 C -0.109 4.109 28 C -0.138 4.138 29 C -0.100 4.100 30 C -0.105 4.105 31 C -0.111 4.111 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.145 0.855 36 H 0.125 0.875 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.273 0.727 40 H 0.231 0.769 41 H 0.136 0.864 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.153 0.847 45 H 0.120 0.880 46 H 0.113 0.887 47 H 0.076 0.924 48 H 0.093 0.907 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.026 12.034 -19.848 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.092 4.092 5 C -0.052 4.052 6 C -0.018 4.018 7 N -0.122 5.122 8 N -0.104 5.104 9 C 0.110 3.890 10 C -0.590 4.590 11 H 0.044 0.956 12 C -0.182 4.182 13 N -0.578 5.578 14 Si 0.775 3.225 15 H -0.175 1.175 16 H -0.208 1.208 17 H -0.159 1.159 18 C -0.009 4.009 19 C -0.327 4.327 20 C 0.399 3.601 21 O -0.398 6.398 22 O -0.211 6.211 23 C 0.016 3.984 24 C -0.151 4.151 25 C -0.124 4.124 26 C -0.132 4.132 27 C -0.127 4.127 28 C -0.156 4.156 29 C -0.119 4.119 30 C -0.105 4.105 31 C -0.167 4.167 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.162 0.838 36 H 0.143 0.857 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.247 0.753 41 H 0.154 0.846 42 H 0.177 0.823 43 H 0.178 0.822 44 H 0.171 0.829 45 H 0.138 0.862 46 H 0.132 0.868 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.063 10.873 -18.914 24.930 hybrid contribution 1.154 0.168 0.335 1.213 sum -10.909 11.040 -18.580 24.209 Atomic orbital electron populations 1.20935 0.88392 1.04153 1.03416 1.20265 0.97961 0.91798 0.97716 1.21170 0.92966 0.98847 1.01773 1.21409 0.94938 0.96793 0.96074 1.17852 0.86702 0.95066 1.05626 1.22228 0.93832 0.91639 0.94070 1.77502 0.87939 1.23941 1.22821 1.48761 1.05700 1.20752 1.35184 1.20179 0.80927 0.93704 0.94149 1.21139 1.08652 1.38591 0.90667 0.95554 1.25914 1.01498 0.95224 0.95564 1.70041 1.36064 1.43232 1.08484 0.85637 0.78298 0.78808 0.79784 1.17462 1.20774 1.15887 1.23795 0.99846 0.87311 0.89942 1.20187 0.92590 1.02983 1.16966 1.20094 0.83589 0.80073 0.76387 1.90800 1.17910 1.71740 1.59345 1.84641 1.38493 1.40552 1.57446 1.18903 1.01793 0.87981 0.89736 1.21443 1.01003 1.01477 0.91194 1.21427 0.97058 0.92863 1.01097 1.21679 0.97989 0.98381 0.95191 1.21383 0.98568 0.98766 0.93955 1.21504 0.98870 0.94222 1.01026 1.21142 0.94645 0.96493 0.99662 1.19954 0.92384 0.96929 1.01236 1.20879 1.00394 0.92334 1.03105 0.89960 0.90332 0.89659 0.83770 0.85697 0.92614 0.88969 0.91746 0.75303 0.84631 0.82298 0.82189 0.82942 0.86161 0.86841 0.90530 0.88857 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.60 71.23 0.68 -1.15 16 2 C -0.08 -1.95 5.88 -19.82 -0.12 -2.07 16 3 C -0.13 -3.68 9.68 22.24 0.22 -3.47 16 4 C -0.07 -2.55 7.77 22.49 0.17 -2.38 16 5 C -0.05 -1.96 5.73 -20.05 -0.11 -2.07 16 6 C 0.15 6.38 6.94 44.09 0.31 6.68 16 7 N -0.30 -14.30 12.27 -44.50 -0.55 -14.85 16 8 N -0.33 -14.15 3.62 -350.12 -1.27 -15.42 16 9 C 0.23 10.05 5.28 85.63 0.45 10.50 16 10 C -0.55 -31.11 9.77 25.60 0.25 -30.86 16 11 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 12 C 0.02 0.97 5.47 84.66 0.46 1.43 16 13 N -0.94 -57.30 13.96 21.45 0.30 -57.00 16 14 Si 0.95 39.31 27.47 68.60 1.88 41.20 16 15 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 16 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.24 -8.61 6.54 99.48 0.65 -7.95 16 18 C 0.14 5.05 11.23 84.30 0.95 6.00 16 19 C -0.31 -11.82 6.26 -18.79 -0.12 -11.94 16 20 C 0.55 19.07 7.69 70.16 0.54 19.61 16 21 O -0.51 -18.72 11.99 19.66 0.24 -18.49 16 22 O -0.30 -8.99 9.87 -0.64 -0.01 -8.99 16 23 C 0.06 1.52 5.14 22.51 0.12 1.64 16 24 C -0.13 -2.90 9.99 22.37 0.22 -2.68 16 25 C -0.11 -1.69 10.04 22.25 0.22 -1.46 16 26 C -0.11 -1.63 10.04 22.28 0.22 -1.41 16 27 C -0.11 -1.89 10.04 22.25 0.22 -1.67 16 28 C -0.14 -3.31 9.58 22.36 0.21 -3.09 16 29 C -0.10 -3.53 9.41 22.49 0.21 -3.32 16 30 C -0.10 -2.95 5.87 -19.90 -0.12 -3.07 16 31 C -0.11 -2.27 9.60 71.24 0.68 -1.58 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.08 8.08 -2.38 -0.02 1.06 16 34 H 0.08 1.12 5.93 -2.39 -0.01 1.11 16 35 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.13 4.59 5.67 -2.91 -0.02 4.57 16 37 H 0.06 2.37 7.20 -2.39 -0.02 2.36 16 38 H 0.09 3.34 7.47 -2.39 -0.02 3.33 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.23 5.67 8.06 -2.91 -0.02 5.64 16 41 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 42 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 43 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 44 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.12 2.93 8.06 -2.90 -0.02 2.90 16 46 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.09 1.41 5.93 -2.39 -0.01 1.39 16 49 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 Total: -1.00 -78.00 416.43 7.21 -70.79 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.93 Total: 29.12 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 5.68 Total: -26.36 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -1.51 Total: -87.27 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: 0.23 Total: -27.48 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.88 Total: 41.20 kcal Total: -78.00 7.21 -70.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005068664.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.617 kcal (2) G-P(sol) polarization free energy of solvation -77.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds