Wall clock time and date at job start Tue Mar 31 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33328 * 122.70565 * 2 1 4 4 S 1.76169 * 108.10273 * 179.74440 * 3 2 1 5 5 C 1.70967 * 90.35961 * 0.30031 * 4 3 2 6 6 S 1.76197 * 124.95342 * 179.97438 * 5 4 3 7 7 C 1.81003 * 99.99910 * 359.69632 * 6 5 4 8 8 C 1.50703 * 109.46940 * 180.02562 * 7 6 5 9 9 O 1.21290 * 119.99946 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99939 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99790 * 355.26526 * 10 8 7 12 12 C 1.50703 * 109.47519 * 90.00336 * 11 10 8 13 13 H 1.08001 * 119.99413 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00597 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99565 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00257 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47003 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47109 * 120.00319 * 16 14 12 19 19 H 1.48502 * 109.47432 * 239.99898 * 16 14 12 20 20 C 1.39923 * 119.99831 * 175.26478 * 10 8 7 21 21 C 1.38868 * 120.07164 * 291.84890 * 20 10 8 22 22 C 1.38123 * 119.92838 * 179.72025 * 21 20 10 23 23 C 1.50699 * 119.96203 * 180.29799 * 22 21 20 24 24 C 1.38279 * 120.06800 * 0.53623 * 22 21 20 25 25 C 1.38279 * 120.14271 * 359.76365 * 24 22 21 26 26 C 1.50700 * 119.96566 * 179.97438 * 25 24 22 27 27 C 1.38109 * 120.07306 * 359.95805 * 25 24 22 28 28 N 1.29761 * 110.09162 * 359.69472 * 5 4 3 29 29 H 1.08998 * 109.46769 * 269.99978 * 1 2 3 30 30 H 1.09001 * 109.46579 * 29.99873 * 1 2 3 31 31 H 1.08997 * 109.47161 * 149.99980 * 1 2 3 32 32 H 1.08001 * 125.95366 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47220 * 60.00173 * 7 6 5 34 34 H 1.08998 * 109.47283 * 299.99586 * 7 6 5 35 35 H 1.09005 * 109.47005 * 210.00036 * 11 10 8 36 36 H 1.08997 * 109.47350 * 329.99921 * 11 10 8 37 37 H 0.97001 * 119.99430 * 180.02562 * 15 14 12 38 38 H 1.07997 * 120.03734 * 359.97438 * 21 20 10 39 39 H 1.08994 * 109.47374 * 270.23322 * 23 22 21 40 40 H 1.08997 * 109.47356 * 30.24340 * 23 22 21 41 41 H 1.09005 * 109.46576 * 150.23561 * 23 22 21 42 42 H 1.08004 * 119.92820 * 179.74239 * 24 22 21 43 43 H 1.08998 * 109.47251 * 269.98084 * 26 25 24 44 44 H 1.09003 * 109.47013 * 29.98261 * 26 25 24 45 45 H 1.09002 * 109.47454 * 149.97891 * 26 25 24 46 46 H 1.07996 * 120.04198 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2275 1.1219 0.0000 4 16 3.9322 0.6778 0.0075 5 6 3.5116 -0.9794 0.0009 6 16 4.6630 -2.3131 0.0026 7 6 6.2177 -1.3861 0.0029 8 6 7.3767 -2.3493 0.0037 9 8 7.1718 -3.5448 0.0044 10 7 8.6410 -1.8823 0.0046 11 6 8.8900 -0.4424 -0.0999 12 6 8.9339 0.1613 1.2802 13 1 8.7902 -0.4649 2.1483 14 6 9.1574 1.5130 1.4346 15 7 9.3319 2.2756 0.3774 16 14 9.2110 2.2614 3.1452 17 1 8.9870 1.1985 4.1577 18 1 10.5389 2.8870 3.3704 19 1 8.1505 3.2937 3.2675 20 6 9.7157 -2.7727 0.1053 21 6 9.9313 -3.4724 1.2853 22 6 10.9896 -4.3550 1.3795 23 6 11.2203 -5.1197 2.6574 24 6 11.8405 -4.5338 0.3043 25 6 11.6321 -3.8339 -0.8700 26 6 12.5622 -4.0314 -2.0391 27 6 10.5724 -2.9542 -0.9726 28 7 2.2208 -1.1116 0.0005 29 1 -0.3633 0.0000 1.0277 30 1 -0.3632 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.8344 2.1279 -0.0004 33 1 6.2661 -0.7581 0.8925 34 1 6.2672 -0.7594 -0.8875 35 1 9.8435 -0.2740 -0.6006 36 1 8.0902 0.0238 -0.6752 37 1 9.4895 3.2266 0.4861 38 1 9.2698 -3.3298 2.1269 39 1 11.8742 -4.5440 3.3124 40 1 10.2662 -5.2910 3.1557 41 1 11.6875 -6.0775 2.4282 42 1 12.6697 -5.2214 0.3819 43 1 13.3841 -3.3185 -1.9741 44 1 12.9592 -5.0464 -2.0201 45 1 12.0160 -3.8723 -2.9689 46 1 10.4099 -2.4082 -1.8901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005101400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:27 Heat of formation + Delta-G solvation = 28.333274 kcal Electronic energy + Delta-G solvation = -28760.501608 eV Core-core repulsion = 24867.929104 eV Total energy + Delta-G solvation = -3892.572504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 376.102 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.12087 -39.57894 -38.43347 -35.41153 -33.28277 -32.90572 -32.01122 -31.25019 -29.22540 -27.68441 -27.45048 -26.89670 -26.42704 -25.08355 -23.17969 -22.28989 -20.43284 -19.90608 -18.75376 -18.28969 -16.89783 -16.79595 -16.56697 -16.05545 -15.64437 -15.51011 -15.10501 -14.65951 -14.63173 -14.45978 -13.79107 -13.64992 -13.37148 -13.22963 -13.05909 -12.98109 -12.95021 -12.68760 -12.61543 -12.53554 -12.38450 -12.29767 -11.82746 -11.78131 -11.34334 -11.26175 -11.23848 -11.07359 -10.94034 -10.81352 -10.62029 -10.31634 -9.95785 -9.78216 -9.58185 -9.46179 -9.07594 -8.72115 -8.63330 -8.22167 -7.81363 -7.44117 -6.33203 -4.41445 0.65164 1.11545 1.18508 1.66345 1.72059 1.78242 2.42585 2.73280 2.93596 3.13012 3.22697 3.26409 3.55927 4.03722 4.22097 4.45505 4.88652 4.99771 5.00459 5.09801 5.10100 5.20189 5.21934 5.39833 5.43646 5.47211 5.51529 5.59460 5.61113 5.69106 5.71725 5.73369 5.78662 5.84983 5.98151 6.00861 6.15441 6.16292 6.42957 6.55616 6.77214 6.83322 6.89316 6.99479 7.14017 7.46822 7.61133 7.64623 7.84198 7.92189 8.52478 8.69371 9.27158 10.73737 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.008468 B = 0.003066 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.808542 B = 9131.100326 C =11120.738704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.075 3.925 3 C -0.274 4.274 4 S 0.154 5.846 5 C 0.006 3.994 6 S 0.082 5.918 7 C -0.162 4.162 8 C 0.545 3.455 9 O -0.539 6.539 10 N -0.551 5.551 11 C 0.236 3.764 12 C -0.543 4.543 13 H 0.064 0.936 14 C 0.070 3.930 15 N -0.887 5.887 16 Si 0.893 3.107 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.180 3.820 21 C -0.109 4.109 22 C -0.078 4.078 23 C -0.110 4.110 24 C -0.131 4.131 25 C -0.079 4.079 26 C -0.109 4.109 27 C -0.126 4.126 28 N -0.461 5.461 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.176 0.824 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.044 0.956 36 H 0.042 0.958 37 H 0.267 0.733 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.117 0.883 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 -5.142 -2.020 7.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C -0.418 4.418 4 S 0.405 5.595 5 C -0.379 4.379 6 S 0.314 5.686 7 C -0.313 4.313 8 C 0.331 3.669 9 O -0.417 6.417 10 N -0.279 5.279 11 C 0.118 3.882 12 C -0.581 4.581 13 H 0.082 0.918 14 C -0.134 4.134 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.206 1.206 20 C 0.089 3.911 21 C -0.128 4.128 22 C -0.079 4.079 23 C -0.166 4.166 24 C -0.149 4.149 25 C -0.080 4.080 26 C -0.166 4.166 27 C -0.145 4.145 28 N -0.181 5.181 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.193 0.807 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.138 0.862 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.979 -6.749 -2.083 8.107 hybrid contribution -0.611 2.468 0.964 2.720 sum -4.591 -4.281 -1.119 6.376 Atomic orbital electron populations 1.20337 0.87093 1.03223 1.02887 1.20345 0.98144 0.86348 1.01118 1.26717 0.95549 1.03878 1.15619 1.84653 1.06732 0.99923 1.68181 1.28949 0.99316 1.02198 1.07467 1.86237 0.91743 1.00586 1.90069 1.24056 0.94534 1.02785 1.09968 1.19251 0.83280 0.87779 0.76579 1.90711 1.84590 1.15706 1.50713 1.45767 1.02619 1.09537 1.69943 1.19672 0.98629 0.71661 0.98286 1.21435 1.51167 0.93310 0.92210 0.91787 1.24893 0.94398 0.96842 0.97225 1.69920 1.47560 1.06096 1.28855 0.86495 0.78013 0.79369 0.84065 1.19485 1.20657 1.20624 1.17428 0.89061 0.91645 0.92946 1.21066 0.97815 0.97084 0.96844 1.19683 0.95126 0.97178 0.95922 1.20743 1.02273 0.99017 0.94612 1.20762 0.99846 1.01409 0.92887 1.19637 0.96038 0.96648 0.95661 1.20737 0.98261 1.01832 0.95745 1.21023 0.95986 0.99402 0.98112 1.66487 1.02472 1.30900 1.18237 0.90685 0.90765 0.90605 0.80663 0.84509 0.85939 0.93782 0.94034 0.92358 0.86231 0.91310 0.91653 0.91816 0.86470 0.91283 0.91824 0.91714 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.31 36.01 0.37 -0.36 16 2 C 0.08 1.03 6.74 -84.19 -0.57 0.46 16 3 C -0.27 -3.50 11.10 29.02 0.32 -3.17 16 4 S 0.15 2.28 21.54 -107.50 -2.32 -0.04 16 5 C 0.01 0.10 7.59 51.89 0.39 0.49 16 6 S 0.08 1.39 21.45 -107.50 -2.31 -0.92 16 7 C -0.16 -2.83 3.78 36.01 0.14 -2.70 16 8 C 0.54 10.87 7.55 -10.98 -0.08 10.79 16 9 O -0.54 -11.69 15.63 5.55 0.09 -11.61 16 10 N -0.55 -11.29 2.51 -114.74 -0.29 -11.58 16 11 C 0.24 5.26 4.88 -5.20 -0.03 5.23 16 12 C -0.54 -13.26 9.16 -34.44 -0.32 -13.58 16 13 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 14 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -23.06 13.29 55.43 0.74 -22.32 16 16 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 C 0.18 3.55 4.74 -83.69 -0.40 3.15 16 21 C -0.11 -2.02 9.22 -39.39 -0.36 -2.39 16 22 C -0.08 -1.23 5.88 -104.65 -0.62 -1.85 16 23 C -0.11 -1.35 10.01 36.01 0.36 -0.99 16 24 C -0.13 -1.90 9.35 -39.55 -0.37 -2.27 16 25 C -0.08 -1.20 5.88 -104.65 -0.62 -1.81 16 26 C -0.11 -1.25 10.01 36.01 0.36 -0.89 16 27 C -0.13 -2.21 9.34 -39.39 -0.37 -2.58 16 28 N -0.46 -7.55 10.59 -10.94 -0.12 -7.66 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.14 2.46 7.74 -51.92 -0.40 2.05 16 34 H 0.12 2.01 7.10 -51.92 -0.37 1.64 16 35 H 0.04 1.05 7.86 -51.93 -0.41 0.64 16 36 H 0.04 0.92 6.47 -51.93 -0.34 0.59 16 37 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 38 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 41 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 42 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 45 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 46 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 417.38 15.07 6.29 6.29 Total: -1.00 -29.22 417.38 -11.35 -40.57 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.54 Total: 3.35 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -1.87 Total: -10.79 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.33 Total: -41.56 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -4.62 Total: -0.95 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -29.22 -11.35 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005101400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.900 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds