Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31493 * 1 3 3 Si 1.86800 * 120.00109 * 2 1 4 4 H 1.48496 * 109.46660 * 239.99911 * 3 2 1 5 5 H 1.48500 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47088 * 119.99996 * 3 2 1 7 7 C 1.38749 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00137 * 179.97438 * 7 2 1 9 9 O 1.34779 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.35572 * 117.00163 * 176.11920 * 9 7 2 11 11 C 1.39376 * 119.72931 * 173.74144 * 10 9 7 12 12 C 1.36558 * 120.14585 * 180.02562 * 11 10 9 13 13 C 1.39595 * 119.90359 * 359.97438 * 12 11 10 14 14 C 1.40437 * 120.50001 * 0.02562 * 13 12 11 15 15 C 1.38694 * 119.72336 * 353.76539 * 10 9 7 16 16 O 1.35080 * 109.71665 * 179.97438 * 14 13 12 17 17 C 1.35374 * 111.82588 * 0.02562 * 16 14 13 18 18 C 1.35708 * 126.21804 * 179.97438 * 17 16 14 19 19 C 1.46866 * 120.00160 * 1.93997 * 18 17 16 20 20 C 1.40027 * 120.17873 * 10.94227 * 19 18 17 21 21 C 1.37750 * 119.84401 * 180.23917 * 20 19 18 22 22 C 1.38633 * 120.20193 * 359.81109 * 21 20 19 23 23 Cl 1.73600 * 119.81692 * 180.02562 * 22 21 20 24 24 C 1.38485 * 120.36226 * 359.97438 * 22 21 20 25 25 C 1.37989 * 120.15375 * 359.97438 * 24 22 21 26 26 Cl 1.73605 * 120.10184 * 180.02562 * 25 24 22 27 27 C 1.47079 * 107.56768 * 0.24266 * 17 16 14 28 28 O 1.21884 * 127.73704 * 179.76439 * 27 17 16 29 29 H 0.96996 * 119.99777 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.92903 * 0.02562 * 11 10 9 31 31 H 1.08001 * 120.04616 * 180.02562 * 12 11 10 32 32 H 1.07994 * 120.00387 * 359.97438 * 15 10 9 33 33 H 1.08007 * 120.00546 * 181.93511 * 18 17 16 34 34 H 1.08004 * 120.07444 * 0.02562 * 20 19 18 35 35 H 1.08001 * 119.90063 * 179.78694 * 21 20 19 36 36 H 1.07999 * 119.92382 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1027 1.6962 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6964 1.2125 7 6 2.0086 -1.2016 0.0005 8 1 3.0886 -1.2017 0.0001 9 8 1.3347 -2.3688 0.0005 10 6 2.0707 -3.5045 -0.0807 11 6 1.4456 -4.7437 0.0463 12 6 2.1787 -5.8931 -0.0336 13 6 3.5572 -5.8260 -0.2435 14 6 4.1989 -4.5836 -0.3730 15 6 3.4395 -3.4235 -0.2889 16 8 5.5223 -4.7722 -0.5673 17 6 5.8466 -6.0864 -0.5818 18 6 7.0890 -6.6039 -0.7558 19 6 8.2426 -5.7081 -0.9098 20 6 8.1095 -4.3382 -0.6520 21 6 9.1948 -3.5036 -0.8034 22 6 10.4182 -4.0165 -1.2062 23 17 11.7796 -2.9556 -1.3932 24 6 10.5605 -5.3706 -1.4591 25 6 9.4834 -6.2203 -1.3111 26 17 9.6634 -7.9177 -1.6279 27 6 4.6067 -6.8518 -0.3813 28 8 4.4767 -8.0629 -0.3359 29 1 -0.4849 0.8400 0.0004 30 1 0.3790 -4.7952 0.2082 31 1 1.6927 -6.8525 0.0646 32 1 3.9148 -2.4586 -0.3861 33 1 7.2295 -7.6745 -0.7809 34 1 7.1572 -3.9365 -0.3385 35 1 9.0923 -2.4463 -0.6082 36 1 11.5167 -5.7625 -1.7729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005252467.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = -19.632131 kcal Electronic energy + Delta-G solvation = -27283.055409 eV Core-core repulsion = 22944.523521 eV Total energy + Delta-G solvation = -4338.531888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 376.010 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.96169 -39.70626 -39.03987 -37.95273 -37.11446 -36.64970 -36.15303 -33.60284 -32.73093 -31.29596 -30.46406 -29.86985 -29.07633 -26.23230 -24.94004 -23.52358 -22.58050 -22.42289 -20.74816 -20.26244 -18.45618 -18.05056 -17.44914 -16.84085 -16.57839 -16.14665 -16.01625 -15.51681 -14.89346 -14.66696 -14.40519 -14.35350 -14.22561 -14.02048 -13.86073 -13.73630 -13.52568 -13.35244 -13.00688 -12.69857 -12.38722 -12.22650 -12.01368 -11.98493 -11.66358 -11.43719 -11.27108 -11.19709 -11.08745 -11.02154 -10.71716 -10.10503 -9.98581 -9.49442 -9.28920 -9.21631 -8.67118 -7.89749 -7.72011 -6.90076 -4.43561 -0.15726 0.77550 1.01100 1.48208 1.80806 1.94278 2.05478 2.77231 2.90071 2.92579 2.97012 3.02338 3.32954 3.64255 3.74340 4.17888 4.38342 4.52550 4.61051 4.71242 4.75839 4.81562 4.98184 4.99005 5.22082 5.34677 5.49789 5.50542 5.63565 5.70912 5.80054 5.91753 6.00746 6.11578 6.23397 6.31616 6.55966 6.71688 6.83758 6.95914 7.02219 7.43078 7.54248 7.61840 8.52857 9.14175 10.24617 Molecular weight = 376.01amu Principal moments of inertia in cm(-1) A = 0.008421 B = 0.002675 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.360641 B =10465.088940 C =13743.671821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.046 3.954 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.393 4.393 8 H 0.103 0.897 9 O -0.139 6.139 10 C 0.199 3.801 11 C -0.212 4.212 12 C 0.029 3.971 13 C -0.362 4.362 14 C 0.173 3.827 15 C -0.250 4.250 16 O -0.220 6.220 17 C 0.014 3.986 18 C -0.082 4.082 19 C -0.040 4.040 20 C -0.080 4.080 21 C -0.103 4.103 22 C -0.024 4.024 23 Cl -0.060 7.060 24 C -0.105 4.105 25 C -0.015 4.015 26 Cl -0.051 7.051 27 C 0.414 3.586 28 O -0.447 6.447 29 H 0.280 0.720 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.143 0.857 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.144 0.856 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.539 -6.650 -1.849 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.468 4.468 8 H 0.120 0.880 9 O -0.037 6.037 10 C 0.139 3.861 11 C -0.231 4.231 12 C 0.010 3.990 13 C -0.365 4.365 14 C 0.129 3.871 15 C -0.270 4.270 16 O -0.129 6.129 17 C -0.032 4.032 18 C -0.101 4.101 19 C -0.041 4.041 20 C -0.097 4.097 21 C -0.121 4.121 22 C -0.051 4.051 23 Cl -0.031 7.031 24 C -0.124 4.124 25 C -0.042 4.042 26 Cl -0.022 7.022 27 C 0.297 3.703 28 O -0.327 6.327 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.160 0.840 33 H 0.182 0.818 34 H 0.181 0.819 35 H 0.162 0.838 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 17.265 -6.851 -1.880 18.669 hybrid contribution 0.667 0.807 -0.129 1.055 sum 17.932 -6.044 -2.009 19.030 Atomic orbital electron populations 1.69987 1.06323 1.29118 1.41364 1.25502 0.95968 0.99462 0.95389 0.85656 0.78895 0.78608 0.79788 1.18908 1.19826 1.18896 1.21604 0.92442 0.80298 1.52434 0.87963 1.83956 1.34558 1.11881 1.73331 1.19068 0.88833 0.87830 0.90327 1.19935 1.00642 0.89343 1.13173 1.19835 0.90307 0.97720 0.91163 1.20214 0.95998 0.93690 1.26622 1.19265 0.80306 0.94883 0.92634 1.19917 0.92909 0.96159 1.18000 1.84301 1.23684 1.23552 1.81340 1.22118 0.96000 0.83207 1.01841 1.21615 0.87046 0.99586 1.01864 1.18804 0.91699 0.93662 0.99946 1.21963 0.99983 0.91282 0.96518 1.21169 0.90589 1.01398 0.98983 1.20911 0.89679 0.90794 1.03734 1.98388 1.43668 1.65157 1.95935 1.20748 0.99017 0.91008 1.01629 1.20878 0.94061 0.85897 1.03381 1.98386 1.97582 1.12439 1.93824 1.20446 0.87375 0.88379 0.74064 1.90665 1.86145 1.14388 1.41539 0.90988 0.85008 0.85574 0.83959 0.81840 0.81902 0.83837 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.73 13.67 55.48 0.76 -20.97 16 2 C 0.05 1.10 5.50 -17.51 -0.10 1.00 16 3 Si 0.95 17.97 29.55 -169.99 -5.02 12.94 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.39 -9.57 9.44 30.92 0.29 -9.28 16 8 H 0.10 2.26 5.24 -52.49 -0.28 1.98 16 9 O -0.14 -3.45 9.74 0.74 0.01 -3.44 16 10 C 0.20 4.22 6.65 -38.99 -0.26 3.96 16 11 C -0.21 -3.96 9.93 -39.76 -0.39 -4.35 16 12 C 0.03 0.49 10.04 -39.68 -0.40 0.10 16 13 C -0.36 -6.58 6.34 -104.83 -0.67 -7.24 16 14 C 0.17 3.15 7.28 -38.51 -0.28 2.87 16 15 C -0.25 -4.89 9.15 -39.16 -0.36 -5.25 16 16 O -0.22 -3.54 7.15 0.47 0.00 -3.53 16 17 C 0.01 0.21 6.84 -36.90 -0.25 -0.04 16 18 C -0.08 -1.06 9.46 -37.00 -0.35 -1.41 16 19 C -0.04 -0.48 5.86 -105.04 -0.62 -1.09 16 20 C -0.08 -0.93 9.21 -39.09 -0.36 -1.29 16 21 C -0.10 -1.05 9.80 -39.61 -0.39 -1.43 16 22 C -0.02 -0.24 6.33 -39.34 -0.25 -0.49 16 23 Cl -0.06 -0.54 28.94 -51.86 -1.50 -2.04 16 24 C -0.10 -1.00 9.59 -39.58 -0.38 -1.38 16 25 C -0.02 -0.16 6.36 -38.97 -0.25 -0.41 16 26 Cl -0.05 -0.50 27.47 -51.86 -1.42 -1.93 16 27 C 0.41 7.19 7.80 -32.27 -0.25 6.94 16 28 O -0.45 -8.34 18.06 5.02 0.09 -8.25 16 29 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 31 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.14 2.70 5.66 -52.49 -0.30 2.41 16 33 H 0.16 1.95 7.05 -52.48 -0.37 1.58 16 34 H 0.16 2.04 5.01 -52.48 -0.26 1.77 16 35 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -26.44 354.99 -9.03 -35.47 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -2.03 Total: 5.20 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -5.25 Total: -18.79 kcal Atomic # 7 Polarization: -21.73 SS G_CDS: 0.76 Total: -20.97 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.10 Total: -15.22 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.02 Total: 12.94 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -2.93 Total: -3.97 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.44 -9.03 -35.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005252467.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.835 kcal (2) G-P(sol) polarization free energy of solvation -26.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds