Wall clock time and date at job start Tue Mar 31 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31493 * 1 3 3 Si 1.86800 * 120.00109 * 2 1 4 4 H 1.48496 * 109.46660 * 239.99911 * 3 2 1 5 5 H 1.48500 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47088 * 119.99996 * 3 2 1 7 7 C 1.38749 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00137 * 179.97438 * 7 2 1 9 9 O 1.34779 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.35572 * 117.00163 * 176.11920 * 9 7 2 11 11 C 1.39376 * 119.72931 * 173.74144 * 10 9 7 12 12 C 1.36558 * 120.14585 * 180.02562 * 11 10 9 13 13 C 1.39595 * 119.90359 * 359.97438 * 12 11 10 14 14 C 1.40437 * 120.50001 * 0.02562 * 13 12 11 15 15 C 1.38694 * 119.72336 * 353.76539 * 10 9 7 16 16 O 1.35080 * 109.71665 * 179.97438 * 14 13 12 17 17 C 1.35374 * 111.82588 * 0.02562 * 16 14 13 18 18 C 1.35708 * 126.21804 * 179.97438 * 17 16 14 19 19 C 1.46866 * 120.00160 * 1.93997 * 18 17 16 20 20 C 1.40027 * 120.17873 * 10.94227 * 19 18 17 21 21 C 1.37750 * 119.84401 * 180.23917 * 20 19 18 22 22 C 1.38633 * 120.20193 * 359.81109 * 21 20 19 23 23 Cl 1.73600 * 119.81692 * 180.02562 * 22 21 20 24 24 C 1.38485 * 120.36226 * 359.97438 * 22 21 20 25 25 C 1.37989 * 120.15375 * 359.97438 * 24 22 21 26 26 Cl 1.73605 * 120.10184 * 180.02562 * 25 24 22 27 27 C 1.47079 * 107.56768 * 0.24266 * 17 16 14 28 28 O 1.21884 * 127.73704 * 179.76439 * 27 17 16 29 29 H 0.96996 * 119.99777 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.92903 * 0.02562 * 11 10 9 31 31 H 1.08001 * 120.04616 * 180.02562 * 12 11 10 32 32 H 1.07994 * 120.00387 * 359.97438 * 15 10 9 33 33 H 1.08007 * 120.00546 * 181.93511 * 18 17 16 34 34 H 1.08004 * 120.07444 * 0.02562 * 20 19 18 35 35 H 1.08001 * 119.90063 * 179.78694 * 21 20 19 36 36 H 1.07999 * 119.92382 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1027 1.6962 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6964 1.2125 7 6 2.0086 -1.2016 0.0005 8 1 3.0886 -1.2017 0.0001 9 8 1.3347 -2.3688 0.0005 10 6 2.0707 -3.5045 -0.0807 11 6 1.4456 -4.7437 0.0463 12 6 2.1787 -5.8931 -0.0336 13 6 3.5572 -5.8260 -0.2435 14 6 4.1989 -4.5836 -0.3730 15 6 3.4395 -3.4235 -0.2889 16 8 5.5223 -4.7722 -0.5673 17 6 5.8466 -6.0864 -0.5818 18 6 7.0890 -6.6039 -0.7558 19 6 8.2426 -5.7081 -0.9098 20 6 8.1095 -4.3382 -0.6520 21 6 9.1948 -3.5036 -0.8034 22 6 10.4182 -4.0165 -1.2062 23 17 11.7796 -2.9556 -1.3932 24 6 10.5605 -5.3706 -1.4591 25 6 9.4834 -6.2203 -1.3111 26 17 9.6634 -7.9177 -1.6279 27 6 4.6067 -6.8518 -0.3813 28 8 4.4767 -8.0629 -0.3359 29 1 -0.4849 0.8400 0.0004 30 1 0.3790 -4.7952 0.2082 31 1 1.6927 -6.8525 0.0646 32 1 3.9148 -2.4586 -0.3861 33 1 7.2295 -7.6745 -0.7809 34 1 7.1572 -3.9365 -0.3385 35 1 9.0923 -2.4463 -0.6082 36 1 11.5167 -5.7625 -1.7729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005252467.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:32 Heat of formation + Delta-G solvation = -30.584435 kcal Electronic energy + Delta-G solvation = -27283.530336 eV Core-core repulsion = 22944.523521 eV Total energy + Delta-G solvation = -4339.006815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 376.010 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.30013 -40.78820 -40.43943 -39.36516 -37.93457 -37.74987 -37.36557 -34.71111 -34.39097 -32.15477 -31.85687 -31.32263 -30.26834 -27.84408 -26.25714 -24.63938 -23.71880 -23.65114 -22.11512 -21.58832 -19.98413 -19.46523 -18.61971 -18.05318 -17.74442 -17.46641 -17.15197 -16.86399 -16.21429 -15.99766 -15.72806 -15.62106 -15.48237 -15.14021 -15.05513 -14.95376 -14.86075 -14.60798 -14.46329 -13.78142 -13.61091 -13.49013 -13.25436 -13.03490 -12.84108 -12.62072 -12.57561 -12.31906 -12.16539 -12.04717 -12.02050 -11.60799 -11.15814 -10.91255 -10.88227 -10.12754 -9.92592 -9.34274 -9.06627 -8.60788 -6.27123 -1.29805 -0.18057 -0.04773 0.36239 0.66094 0.71330 1.12213 1.37747 1.46589 1.46898 1.53912 1.71754 2.11940 2.36665 2.50259 2.63596 3.01174 3.20096 3.47953 3.50190 3.60245 3.75718 3.79142 3.91803 4.07215 4.17038 4.20882 4.38794 4.48952 4.58100 4.66435 4.73405 4.82657 4.91954 5.01781 5.11412 5.18258 5.32208 5.40575 5.42057 5.57217 5.85184 5.99097 6.21674 6.82266 7.49328 8.59097 Molecular weight = 376.01amu Principal moments of inertia in cm(-1) A = 0.008421 B = 0.002675 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.360641 B =10465.088940 C =13743.671821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.008 4.008 3 Si 1.016 2.984 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.421 4.421 8 H 0.114 0.886 9 O -0.188 6.188 10 C 0.187 3.813 11 C -0.217 4.217 12 C 0.037 3.963 13 C -0.362 4.362 14 C 0.179 3.821 15 C -0.258 4.258 16 O -0.213 6.213 17 C -0.026 4.026 18 C -0.030 4.030 19 C -0.068 4.068 20 C -0.081 4.081 21 C -0.105 4.105 22 C -0.017 4.017 23 Cl -0.047 7.047 24 C -0.102 4.102 25 C -0.008 4.008 26 Cl -0.041 7.041 27 C 0.420 3.580 28 O -0.461 6.461 29 H 0.280 0.720 30 H 0.143 0.857 31 H 0.157 0.843 32 H 0.143 0.857 33 H 0.178 0.822 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.474 -8.038 -2.315 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.835 3.165 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.496 4.496 8 H 0.131 0.869 9 O -0.091 6.091 10 C 0.131 3.869 11 C -0.236 4.236 12 C 0.019 3.981 13 C -0.365 4.365 14 C 0.134 3.866 15 C -0.278 4.278 16 O -0.121 6.121 17 C -0.071 4.071 18 C -0.049 4.049 19 C -0.069 4.069 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.044 4.044 23 Cl -0.018 7.018 24 C -0.121 4.121 25 C -0.035 4.035 26 Cl -0.012 7.012 27 C 0.305 3.695 28 O -0.342 6.342 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.175 0.825 32 H 0.161 0.839 33 H 0.195 0.805 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 21.251 -8.300 -2.351 22.935 hybrid contribution -0.034 0.746 -0.051 0.749 sum 21.217 -7.554 -2.401 22.649 Atomic orbital electron populations 1.70111 1.08134 1.29802 1.45381 1.26636 0.96752 1.02796 0.94725 0.84669 0.77608 0.73951 0.80304 1.17856 1.19632 1.17829 1.22001 0.93112 0.80729 1.53717 0.86910 1.83956 1.35573 1.12668 1.76853 1.19546 0.89641 0.88041 0.89637 1.20178 1.01483 0.88942 1.12998 1.20174 0.90086 0.98468 0.89400 1.20669 0.96682 0.94317 1.24833 1.19205 0.81422 0.94327 0.91652 1.19919 0.92648 0.96850 1.18380 1.84344 1.22120 1.24124 1.81545 1.21928 0.95998 0.82336 1.06826 1.21969 0.86490 1.00386 0.96018 1.18802 0.91937 0.93745 1.02391 1.21926 1.00052 0.91441 0.96484 1.21332 0.90336 1.02090 0.98641 1.21047 0.89864 0.91183 1.02269 1.98404 1.42897 1.64800 1.95727 1.20999 0.99600 0.90738 1.00786 1.20930 0.93686 0.86544 1.02364 1.98400 1.97517 1.11645 1.93664 1.20476 0.87866 0.87999 0.73203 1.90662 1.86496 1.14741 1.42278 0.91076 0.83947 0.82533 0.83927 0.80466 0.82943 0.82344 0.81517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.77 13.67 21.63 0.30 -49.47 16 2 C -0.01 -0.39 5.50 84.87 0.47 0.08 16 3 Si 1.02 37.97 29.55 68.60 2.03 40.00 16 4 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 7 C -0.42 -21.63 9.44 67.94 0.64 -20.99 16 8 H 0.11 5.22 5.24 -2.91 -0.02 5.21 16 9 O -0.19 -9.95 9.74 -20.27 -0.20 -10.15 16 10 C 0.19 8.25 6.65 22.65 0.15 8.40 16 11 C -0.22 -8.19 9.93 22.15 0.22 -7.97 16 12 C 0.04 1.24 10.04 22.20 0.22 1.46 16 13 C -0.36 -12.74 6.34 -20.00 -0.13 -12.87 16 14 C 0.18 6.43 7.28 22.97 0.17 6.59 16 15 C -0.26 -10.33 9.15 22.54 0.21 -10.13 16 16 O -0.21 -6.61 7.15 -21.22 -0.15 -6.76 16 17 C -0.03 -0.76 6.84 24.00 0.16 -0.60 16 18 C -0.03 -0.69 9.46 23.94 0.23 -0.46 16 19 C -0.07 -1.43 5.86 -20.13 -0.12 -1.55 16 20 C -0.08 -1.72 9.21 22.59 0.21 -1.51 16 21 C -0.11 -1.86 9.80 22.25 0.22 -1.64 16 22 C -0.02 -0.27 6.33 22.42 0.14 -0.13 16 23 Cl -0.05 -0.70 28.94 -2.72 -0.08 -0.78 16 24 C -0.10 -1.57 9.59 22.27 0.21 -1.36 16 25 C -0.01 -0.14 6.36 22.66 0.14 0.00 16 26 Cl -0.04 -0.68 27.47 -2.72 -0.07 -0.75 16 27 C 0.42 13.88 7.80 27.01 0.21 14.09 16 28 O -0.46 -16.25 18.06 -4.94 -0.09 -16.34 16 29 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.14 5.00 8.06 -2.91 -0.02 4.98 16 31 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 32 H 0.14 5.61 5.66 -2.91 -0.02 5.59 16 33 H 0.18 3.64 7.05 -2.91 -0.02 3.62 16 34 H 0.15 3.61 5.01 -2.91 -0.01 3.59 16 35 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -59.97 354.99 6.28 -53.70 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 1.19 Total: 19.13 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 3.36 Total: -28.58 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.30 Total: -49.47 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.44 Total: -33.25 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.15 Total: -1.53 kcal Total: -59.97 6.28 -53.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005252467.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.111 kcal (2) G-P(sol) polarization free energy of solvation -59.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds