Wall clock time and date at job start Tue Mar 31 2020 05:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86804 * 119.99866 * 2 1 4 4 H 1.48497 * 109.47090 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47085 * 299.99955 * 3 2 1 6 6 H 1.48504 * 109.47003 * 59.99806 * 3 2 1 7 7 C 1.38797 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00560 * 180.02562 * 7 2 1 9 9 O 1.34868 * 119.99488 * 0.02562 * 7 2 1 10 10 C 1.34774 * 116.99858 * 179.97438 * 9 7 2 11 11 O 1.21545 * 119.99908 * 359.97438 * 10 9 7 12 12 C 1.47345 * 120.00222 * 179.97438 * 10 9 7 13 13 C 1.39807 * 120.19695 * 359.97438 * 12 10 9 14 14 C 1.37758 * 119.89849 * 180.02562 * 13 12 10 15 15 C 1.38579 * 120.30737 * 359.72469 * 14 13 12 16 16 C 1.38058 * 120.40978 * 0.55805 * 15 14 13 17 17 C 1.38692 * 120.09074 * 359.44010 * 16 15 14 18 18 O 1.35653 * 120.15617 * 180.30083 * 17 16 15 19 19 C 1.42900 * 116.99449 * 0.02562 * 18 17 16 20 20 C 1.50704 * 109.46640 * 179.97438 * 19 18 17 21 21 C 1.38241 * 120.00693 * 359.97438 * 20 19 18 22 22 C 1.38215 * 120.00986 * 179.97438 * 21 20 19 23 23 C 1.38270 * 120.01956 * 0.02562 * 22 21 20 24 24 C 1.38194 * 120.01258 * 359.97438 * 23 22 21 25 25 C 1.38311 * 120.00070 * 179.72085 * 20 19 18 26 26 Br 1.89096 * 120.01201 * 0.02562 * 25 20 19 27 27 H 0.96997 * 119.99928 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.05049 * 359.97438 * 13 12 10 29 29 H 1.07992 * 119.84541 * 180.02562 * 14 13 12 30 30 H 1.08003 * 119.79303 * 180.29727 * 15 14 13 31 31 H 1.08002 * 119.95663 * 179.72426 * 16 15 14 32 32 H 1.08998 * 109.47452 * 299.99194 * 19 18 17 33 33 H 1.08995 * 109.47745 * 59.99859 * 19 18 17 34 34 H 1.07996 * 119.99102 * 359.95308 * 21 20 19 35 35 H 1.07999 * 119.98982 * 179.97438 * 22 21 20 36 36 H 1.08007 * 119.99089 * 179.97438 * 23 22 21 37 37 H 1.07993 * 120.00586 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3465 0.0006 5 1 1.8895 2.3965 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0083 -1.2020 0.0005 8 1 3.0883 -1.2020 0.0010 9 8 1.3340 -2.3699 0.0005 10 6 2.0681 -3.5002 0.0005 11 8 3.2818 -3.4366 0.0001 12 6 1.3992 -4.8131 0.0011 13 6 0.0033 -4.8912 0.0022 14 6 -0.6156 -6.1219 0.0033 15 6 0.1390 -7.2842 -0.0025 16 6 1.5182 -7.2220 0.0023 17 6 2.1588 -5.9918 0.0011 18 8 3.5138 -5.9292 -0.0004 19 6 4.2206 -7.1712 -0.0013 20 6 5.7039 -6.9049 -0.0035 21 6 6.1729 -5.6045 -0.0049 22 6 7.5333 -5.3602 -0.0065 23 6 8.4258 -6.4163 -0.0071 24 6 7.9579 -7.7167 -0.0057 25 6 6.5963 -7.9617 0.0011 26 35 5.9554 -9.7407 0.0096 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5888 -3.9880 0.0030 29 1 -1.6939 -6.1812 0.0037 30 1 -0.3549 -8.2447 -0.0065 31 1 2.0991 -8.1324 0.0022 32 1 3.9549 -7.7411 0.8890 33 1 3.9528 -7.7411 -0.8909 34 1 5.4762 -4.7793 -0.0052 35 1 7.8993 -4.3441 -0.0080 36 1 9.4887 -6.2249 -0.0088 37 1 8.6550 -8.5414 -0.0058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005583148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:45 Heat of formation + Delta-G solvation = -56.864973 kcal Electronic energy + Delta-G solvation = -24843.477714 eV Core-core repulsion = 20984.027533 eV Total energy + Delta-G solvation = -3859.450181 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.014 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.30679 -39.35579 -38.44118 -37.05464 -34.99262 -32.89801 -32.15766 -31.99694 -30.96286 -29.63871 -29.38725 -26.63347 -25.53937 -23.43332 -22.84146 -22.03812 -21.08919 -20.21413 -17.96875 -17.67257 -17.05512 -16.78433 -15.97937 -15.71865 -15.27191 -14.99932 -14.86049 -14.39614 -14.30382 -14.25887 -13.88857 -13.52491 -13.47412 -13.44295 -12.52561 -12.38089 -12.32177 -11.66487 -11.46290 -11.41802 -11.22791 -11.21220 -11.11998 -11.00294 -10.85246 -10.40806 -10.40127 -10.39911 -9.78834 -8.96134 -8.91512 -8.84305 -8.73278 -8.56276 -7.99508 -6.41816 -4.04128 0.92519 1.18006 1.23629 1.38394 1.65429 3.13133 3.18015 3.19717 3.27100 3.49765 3.53861 3.94313 4.35161 4.46670 4.53839 4.72535 4.90452 4.96012 5.07219 5.16100 5.16741 5.19442 5.19636 5.34937 5.40341 5.53662 5.55869 5.81306 5.87877 6.05210 6.07212 6.27288 6.33295 6.41686 6.54904 6.69933 6.77966 6.93764 7.01802 7.40191 7.61667 7.97207 8.77900 9.07703 9.90606 10.76551 Molecular weight = 376.01amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.002864 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.321708 B = 9774.406286 C =12131.562164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.371 4.371 8 H 0.097 0.903 9 O -0.211 6.211 10 C 0.439 3.561 11 O -0.537 6.537 12 C -0.122 4.122 13 C -0.034 4.034 14 C -0.170 4.170 15 C -0.067 4.067 16 C -0.226 4.226 17 C 0.174 3.826 18 O -0.272 6.272 19 C 0.091 3.909 20 C -0.062 4.062 21 C -0.083 4.083 22 C -0.102 4.102 23 C -0.116 4.116 24 C -0.096 4.096 25 C -0.088 4.088 26 Br -0.056 7.056 27 H 0.269 0.731 28 H 0.148 0.852 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.161 0.839 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.004 -19.883 -0.007 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.447 4.447 8 H 0.115 0.885 9 O -0.119 6.119 10 C 0.287 3.713 11 O -0.434 6.434 12 C -0.124 4.124 13 C -0.052 4.052 14 C -0.189 4.189 15 C -0.085 4.085 16 C -0.245 4.245 17 C 0.127 3.873 18 O -0.183 6.183 19 C 0.016 3.984 20 C -0.064 4.064 21 C -0.102 4.102 22 C -0.121 4.121 23 C -0.135 4.135 24 C -0.116 4.116 25 C -0.167 4.167 26 Br 0.029 6.971 27 H 0.079 0.921 28 H 0.166 0.834 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.179 0.821 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.042 -20.190 -0.003 22.550 hybrid contribution 0.465 0.869 -0.004 0.985 sum 10.507 -19.322 -0.007 21.994 Atomic orbital electron populations 1.69982 1.06001 1.27602 1.46387 1.25339 0.95827 0.98827 0.96432 0.85621 0.79502 0.80093 0.78100 1.18921 1.20190 1.20195 1.21306 0.92487 0.79778 1.51111 0.88539 1.83902 1.39129 1.13173 1.75679 1.20451 0.85933 0.85097 0.79857 1.90610 1.14731 1.87607 1.50448 1.18848 0.92954 0.89996 1.10615 1.21527 0.92594 0.98972 0.92112 1.21019 1.00120 0.92063 1.05669 1.21005 0.92938 0.98466 0.96106 1.21091 0.95976 0.95871 1.11544 1.18930 0.82216 0.92766 0.93422 1.86329 1.15057 1.29602 1.87328 1.21600 0.88367 0.86143 1.02339 1.19406 0.93407 0.93160 1.00450 1.21533 0.96367 0.96895 0.95357 1.21436 0.93220 0.99733 0.97675 1.21214 1.00119 0.92010 1.00174 1.20972 0.92872 0.97794 0.99964 1.21441 0.95381 0.89877 1.10027 1.96682 1.88476 1.14239 1.97683 0.92111 0.83440 0.85563 0.85842 0.85305 0.90204 0.90211 0.82125 0.84988 0.85184 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.98 13.67 55.49 0.76 -24.22 16 2 C 0.04 1.11 5.50 -17.52 -0.10 1.01 16 3 Si 0.94 21.19 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.37 -10.93 9.65 30.94 0.30 -10.63 16 8 H 0.10 2.86 6.86 -52.49 -0.36 2.50 16 9 O -0.21 -6.08 8.99 -21.79 -0.20 -6.28 16 10 C 0.44 11.35 7.83 34.44 0.27 11.62 16 11 O -0.54 -14.53 13.79 -26.63 -0.37 -14.89 16 12 C -0.12 -2.56 5.89 -104.86 -0.62 -3.18 16 13 C -0.03 -0.61 9.61 -39.17 -0.38 -0.99 16 14 C -0.17 -2.43 10.02 -39.63 -0.40 -2.83 16 15 C -0.07 -0.86 10.03 -39.52 -0.40 -1.25 16 16 C -0.23 -3.21 9.03 -39.48 -0.36 -3.56 16 17 C 0.17 3.15 6.70 -38.67 -0.26 2.89 16 18 O -0.27 -4.97 6.69 -40.54 -0.27 -5.24 16 19 C 0.09 1.27 3.96 36.01 0.14 1.41 16 20 C -0.06 -0.87 5.88 -104.59 -0.62 -1.48 16 21 C -0.08 -1.25 9.38 -39.59 -0.37 -1.62 16 22 C -0.10 -1.25 10.05 -39.58 -0.40 -1.65 16 23 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 24 C -0.10 -1.00 9.79 -39.56 -0.39 -1.39 16 25 C -0.09 -1.05 6.22 -39.51 -0.25 -1.29 16 26 Br -0.06 -0.57 32.49 -68.01 -2.21 -2.78 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.15 2.82 7.61 -52.49 -0.40 2.42 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 31 H 0.13 1.47 6.30 -52.49 -0.33 1.14 16 32 H 0.08 1.00 7.59 -51.93 -0.39 0.60 16 33 H 0.08 1.00 7.60 -51.93 -0.39 0.60 16 34 H 0.16 2.94 6.38 -52.49 -0.33 2.60 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 36 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -32.91 347.02 -9.75 -42.66 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -3.46 Total: 3.87 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -4.20 Total: -14.51 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.76 Total: -24.22 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.83 Total: -26.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.21 Total: -2.78 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.91 -9.75 -42.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005583148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.207 kcal (2) G-P(sol) polarization free energy of solvation -32.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds